Wall clock time and date at job start Tue Mar 31 2020 03:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 N 1.46502 * 109.47073 * 179.97438 * 18 17 15 20 20 C 1.34431 * 126.81866 * 125.00110 * 19 18 17 21 21 N 1.30832 * 108.07286 * 179.97438 * 20 19 18 22 22 C 1.33236 * 109.83132 * 359.97438 * 21 20 19 23 23 N 1.30713 * 108.94996 * 359.75637 * 22 21 20 24 24 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 25 25 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 27 27 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 28 28 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 29 29 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 30 30 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 31 31 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 32 32 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 33 33 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 34 34 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 35 35 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 36 36 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 37 37 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 38 38 H 1.07997 * 125.96521 * 359.97438 * 20 19 18 39 39 H 1.08003 * 125.52582 * 180.02562 * 22 21 20 40 40 H 1.08999 * 113.61567 * 334.48111 * 24 10 9 41 41 H 1.08998 * 113.61196 * 105.38466 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 7 1.3501 -11.1560 5.4466 20 6 1.0393 -11.3293 6.7430 21 7 1.9084 -12.1586 7.2614 22 6 2.7848 -12.5348 6.3311 23 7 2.4812 -11.9516 5.2013 24 6 1.2469 -4.8365 -0.5606 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 3.0560 -3.5693 -0.4293 28 1 2.9742 -4.3216 1.9018 29 1 1.1688 -4.1300 1.9705 30 1 2.8060 -6.1607 0.2828 31 1 0.0882 -6.1151 1.7060 32 1 0.4334 -7.2968 0.4205 33 1 2.5317 -7.3971 2.3080 34 1 2.4196 -9.8859 3.3348 35 1 2.0731 -8.7043 4.6201 36 1 -0.1422 -9.7545 4.9895 37 1 0.2038 -10.9365 3.7044 38 1 0.2159 -10.8651 7.2654 39 1 3.6096 -13.2150 6.4843 40 1 0.1684 -4.7076 -0.4690 41 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489377883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:33 Heat of formation + Delta-G solvation = 57.567205 kcal Electronic energy + Delta-G solvation = -21954.793738 eV Core-core repulsion = 18485.575008 eV Total energy + Delta-G solvation = -3469.218730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.98385 -40.96283 -39.81027 -36.18107 -35.75103 -35.01334 -32.32766 -32.16696 -31.58792 -28.72428 -26.45852 -26.17530 -25.33462 -22.91298 -22.70540 -22.30025 -21.43283 -20.42865 -19.07655 -18.65682 -17.64112 -17.20087 -17.09587 -16.62546 -16.30589 -16.16018 -15.74808 -15.41310 -15.27105 -15.00632 -14.82440 -14.48617 -14.10991 -13.58793 -13.41445 -13.23383 -13.08222 -12.97378 -12.91344 -12.64890 -12.27849 -12.19100 -12.08237 -11.61146 -11.55894 -11.16502 -11.05010 -10.93348 -10.82115 -10.77190 -10.62214 -10.08497 -8.97541 -7.94845 -5.23050 0.68822 1.30728 1.47204 1.48673 1.56660 1.57002 2.02409 2.22872 2.56488 3.36971 3.46926 3.55123 3.61603 3.73304 3.75406 3.84040 3.95378 4.14844 4.21095 4.26292 4.34443 4.37122 4.42993 4.56706 4.67191 4.76795 4.79936 4.97855 4.99227 5.06105 5.22709 5.28579 5.36081 5.43099 5.48660 5.53092 5.73581 5.88007 6.27660 6.50963 7.12924 7.19156 7.33125 8.11878 8.33166 9.28559 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032227 B = 0.002065 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.640056 B =13555.945930 C =13818.652349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.730 5.730 10 C 0.141 3.859 11 C -0.153 4.153 12 C -0.095 4.095 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.517 3.483 16 O -0.584 6.584 17 C -0.138 4.138 18 C 0.146 3.854 19 N -0.383 5.383 20 C 0.261 3.739 21 N -0.580 5.580 22 C 0.193 3.807 23 N -0.350 5.350 24 C -0.137 4.137 25 H 0.250 0.750 26 H 0.372 0.628 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.416 0.584 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.256 0.744 39 H 0.240 0.760 40 H 0.067 0.933 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -24.252 10.232 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.032 3.968 11 C -0.193 4.193 12 C -0.114 4.114 13 C 0.014 3.986 14 N -0.365 5.365 15 C 0.304 3.696 16 O -0.464 6.464 17 C -0.179 4.179 18 C 0.025 3.975 19 N -0.173 5.173 20 C -0.035 4.035 21 N -0.308 5.308 22 C -0.110 4.110 23 N -0.178 5.178 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.204 0.796 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.253 0.747 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.108 0.892 38 H 0.272 0.728 39 H 0.256 0.744 40 H 0.086 0.914 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.476 -24.358 9.687 26.779 hybrid contribution -0.062 1.426 -0.057 1.429 sum 5.413 -22.932 9.630 25.454 Atomic orbital electron populations 1.69821 1.06669 1.25989 1.59762 1.25601 0.96393 1.01247 1.04025 0.85142 0.77732 0.79532 0.77380 1.21480 1.22479 1.19268 1.19723 0.91586 0.85395 1.40628 0.90339 1.42635 1.05354 1.01232 1.87580 1.21976 0.95555 0.83915 0.95391 1.23763 1.01046 0.96013 0.98493 1.22513 0.99469 0.93053 0.96391 1.21228 0.94537 0.91764 0.91092 1.45923 1.13680 1.35284 1.41580 1.20729 0.87037 0.80467 0.81380 1.90732 1.16971 1.70856 1.67877 1.21757 0.99593 0.97714 0.98821 1.21594 0.93079 0.91101 0.91774 1.50668 1.22176 1.34388 1.10113 1.26897 0.99263 0.94652 0.82704 1.70588 1.07861 1.18103 1.34204 1.26579 0.99605 0.99265 0.85552 1.77978 1.03074 1.11887 1.24829 1.23312 0.99828 0.95896 0.98577 0.94126 0.79641 0.90346 0.91443 0.92508 0.86140 0.93249 0.91570 0.74674 0.86827 0.86641 0.85421 0.89214 0.72842 0.74433 0.91404 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.24 -13.18 9.97 84.03 0.84 -12.35 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.73 -36.10 5.41 -320.44 -1.73 -37.83 16 10 C 0.14 5.13 4.47 45.52 0.20 5.34 16 11 C -0.15 -4.55 7.45 31.21 0.23 -4.32 16 12 C -0.10 -2.11 3.76 -10.18 -0.04 -2.15 16 13 C 0.14 3.03 5.51 86.38 0.48 3.50 16 14 N -0.71 -11.94 5.56 -463.06 -2.57 -14.51 16 15 C 0.52 9.43 7.83 87.66 0.69 10.12 16 16 O -0.58 -15.43 15.98 -3.04 -0.05 -15.48 16 17 C -0.14 -1.58 5.92 29.85 0.18 -1.41 16 18 C 0.15 1.72 5.84 86.38 0.50 2.22 16 19 N -0.38 -5.39 3.69 -352.05 -1.30 -6.69 16 20 C 0.26 3.19 12.63 180.36 2.28 5.47 16 21 N -0.58 -9.91 11.19 -204.00 -2.28 -12.19 16 22 C 0.19 3.03 13.03 180.77 2.36 5.39 16 23 N -0.35 -6.21 12.58 -61.25 -0.77 -6.98 16 24 C -0.14 -3.96 7.39 31.12 0.23 -3.73 16 25 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.37 20.00 7.91 -92.71 -0.73 19.27 16 27 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.97 7.90 -2.39 -0.02 1.95 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 32 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.42 4.64 8.47 -92.71 -0.79 3.85 16 34 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.13 1.10 8.05 -2.38 -0.02 1.08 16 37 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.26 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.24 2.08 8.06 -2.91 -0.02 2.05 16 40 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -75.92 353.18 1.54 -74.38 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.47 Total: 26.86 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 8.41 Total: 3.94 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -8.37 Total: -137.47 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.05 Total: -15.48 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.92 1.54 -74.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489377883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.944 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds