Wall clock time and date at job start Tue Mar 31 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47027 * 125.65234 * 359.74831 * 9 7 2 11 11 C 1.54324 * 107.27233 * 181.01966 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.08998 * 111.00887 * 82.56211 * 12 11 10 14 14 N 1.46495 * 111.00360 * 206.42345 * 12 11 10 15 15 C 1.34775 * 119.99841 * 204.99717 * 14 12 11 16 16 O 1.21283 * 120.00095 * 359.97438 * 15 14 12 17 17 C 1.50709 * 119.99853 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.46802 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47028 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47485 * 180.02562 * 19 18 17 21 21 C 1.34427 * 126.82602 * 124.70970 * 20 19 18 22 22 N 1.30832 * 108.07770 * 179.89458 * 21 20 19 23 23 C 1.33236 * 109.83155 * 0.38179 * 22 21 20 24 24 N 1.30713 * 108.94555 * 359.76074 * 23 22 21 25 25 C 1.47430 * 125.64889 * 179.43985 * 9 7 2 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.87929 * 300.44400 * 10 9 7 28 28 H 1.09004 * 109.88144 * 61.60709 * 10 9 7 29 29 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 30 30 H 1.08997 * 110.72037 * 263.65355 * 11 10 9 31 31 H 0.96996 * 119.99949 * 24.99281 * 14 12 11 32 32 H 1.08993 * 109.47261 * 300.00013 * 17 15 14 33 33 H 1.09000 * 109.46677 * 60.00725 * 17 15 14 34 34 H 1.09001 * 109.47328 * 299.99809 * 18 17 15 35 35 H 1.08996 * 109.47095 * 60.00102 * 18 17 15 36 36 H 1.09007 * 109.47344 * 300.00332 * 19 18 17 37 37 H 1.09005 * 109.47264 * 59.99756 * 19 18 17 38 38 H 1.07995 * 125.95794 * 0.03724 * 21 20 19 39 39 H 1.08003 * 125.53147 * 179.73109 * 23 22 21 40 40 H 1.08999 * 110.36600 * 274.74731 * 25 9 7 41 41 H 1.09003 * 110.36161 * 37.06348 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1377 -2.5327 -0.0080 11 6 -0.4486 -4.0442 0.0105 12 6 0.8515 -4.6594 0.5923 13 1 0.8562 -4.6053 1.6810 14 7 1.0288 -6.0402 0.1364 15 6 1.7588 -6.9036 0.8699 16 8 2.2693 -6.5372 1.9073 17 6 1.9407 -8.3243 0.4012 18 6 2.8034 -9.0872 1.4085 19 6 2.9886 -10.5293 0.9324 20 7 3.8141 -11.2600 1.8971 21 6 3.4966 -12.4058 2.5245 22 7 4.4972 -12.7342 3.3009 23 6 5.4636 -11.8223 3.2029 24 7 5.0919 -10.8994 2.3551 25 6 1.9333 -3.7311 -0.0198 26 1 -0.4850 0.8401 0.0004 27 1 -0.5579 -2.0568 0.8780 28 1 -0.5542 -2.0796 -0.9076 29 1 -1.2989 -4.2550 0.6592 30 1 -0.6346 -4.4120 -0.9985 31 1 0.6208 -6.3331 -0.6934 32 1 0.9670 -8.8070 0.3182 33 1 2.4312 -8.3257 -0.5723 34 1 3.7772 -8.6046 1.4919 35 1 2.3126 -9.0857 2.3817 36 1 2.0150 -11.0122 0.8485 37 1 3.4796 -10.5304 -0.0409 38 1 2.5772 -12.9598 2.4062 39 1 6.4018 -11.8421 3.7376 40 1 2.1623 -4.0340 -1.0415 41 1 2.8352 -3.7452 0.5922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490567946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:51 Heat of formation + Delta-G solvation = 76.098451 kcal Electronic energy + Delta-G solvation = -22466.843079 eV Core-core repulsion = 18998.427924 eV Total energy + Delta-G solvation = -3468.415155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.31545 -39.76047 -37.37991 -35.81118 -34.04725 -32.53516 -31.78733 -31.47082 -29.24686 -28.00226 -26.69158 -24.53108 -23.31719 -22.28679 -21.50447 -20.53569 -20.35494 -19.88853 -17.86328 -17.06802 -16.72838 -16.39174 -15.79494 -15.67581 -15.15563 -14.63166 -14.54338 -14.27608 -14.07785 -13.77106 -13.27263 -12.83739 -12.72810 -12.45409 -12.19598 -12.09905 -11.95463 -11.80830 -11.19292 -11.02361 -10.92520 -10.75879 -10.39138 -10.30497 -10.14218 -10.08797 -10.00460 -9.93368 -9.76480 -9.63760 -8.77956 -8.60594 -6.85895 -5.72624 -3.06293 1.34577 1.98432 2.69499 2.72311 3.26092 3.41571 3.45463 3.46991 4.01355 4.04681 4.40514 4.47887 4.51688 4.65467 4.77197 4.85473 5.00418 5.07408 5.21089 5.30385 5.42657 5.59599 5.65837 5.70987 5.77499 5.93511 5.95670 6.14525 6.15931 6.29257 6.38170 6.48339 6.56049 6.67005 6.94153 7.51462 7.55103 7.65920 7.78761 7.79803 8.23139 8.36203 9.20532 9.80383 10.45149 11.39260 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033949 B = 0.002361 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.568613 B =11859.026900 C =12452.672909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.096 0.904 14 N -0.717 5.717 15 C 0.509 3.491 16 O -0.538 6.538 17 C -0.138 4.138 18 C -0.116 4.116 19 C 0.128 3.872 20 N -0.377 5.377 21 C 0.251 3.749 22 N -0.550 5.550 23 C 0.195 3.805 24 N -0.312 5.312 25 C 0.129 3.871 26 H 0.253 0.747 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.397 0.603 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.218 0.782 39 H 0.216 0.784 40 H 0.019 0.981 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 -24.816 -1.071 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.114 0.886 14 N -0.368 5.368 15 C 0.294 3.706 16 O -0.415 6.415 17 C -0.179 4.179 18 C -0.155 4.155 19 C 0.006 3.994 20 N -0.168 5.168 21 C -0.046 4.046 22 N -0.278 5.278 23 C -0.108 4.108 24 N -0.140 5.140 25 C 0.002 3.998 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.231 0.769 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.234 0.766 39 H 0.233 0.767 40 H 0.037 0.963 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.457 -23.923 -0.360 23.970 hybrid contribution -0.061 0.738 -0.594 0.949 sum 1.396 -23.185 -0.954 23.246 Atomic orbital electron populations 1.69935 1.04886 1.25212 1.57140 1.24810 0.95768 0.97711 1.02185 0.86162 0.78438 0.83003 0.77958 1.21158 1.21572 1.21092 1.19029 0.90478 0.82281 1.43825 0.90434 1.44388 1.01630 0.99812 1.87272 1.21151 0.84534 0.87453 1.01481 1.23178 0.95892 1.00072 0.99694 1.22362 0.96825 0.78777 0.99941 0.88562 1.46027 1.53018 1.11788 1.25924 1.20486 0.78467 0.87265 0.84344 1.90747 1.47769 1.78939 1.24051 1.21572 1.02074 0.93430 1.00798 1.21581 1.02457 0.92151 0.99308 1.21920 0.93647 0.93157 0.90633 1.50586 1.13360 1.19093 1.33745 1.26078 0.99866 0.87544 0.91121 1.70530 1.02075 1.30247 1.24900 1.26039 0.99830 0.88457 0.96489 1.78111 0.94715 1.23809 1.17332 1.21863 0.94871 0.86191 0.96902 0.93668 0.93246 0.93572 0.91685 0.92055 0.76893 0.88683 0.88475 0.89368 0.90449 0.87909 0.89033 0.76562 0.76722 0.96315 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.65 3.39 -169.92 -0.58 -16.23 16 10 C 0.18 4.27 5.37 -3.06 -0.02 4.25 16 11 C -0.15 -2.61 6.59 -24.90 -0.16 -2.78 16 12 C 0.13 2.23 3.44 -65.67 -0.23 2.01 16 13 H 0.10 1.93 7.54 -51.93 -0.39 1.54 16 14 N -0.72 -9.33 5.19 -51.62 -0.27 -9.60 16 15 C 0.51 6.71 7.83 -10.98 -0.09 6.62 16 16 O -0.54 -9.83 15.62 5.56 0.09 -9.75 16 17 C -0.14 -1.02 5.70 -27.88 -0.16 -1.18 16 18 C -0.12 -1.00 4.72 -26.73 -0.13 -1.13 16 19 C 0.13 0.71 6.55 -4.05 -0.03 0.68 16 20 N -0.38 -3.25 3.69 -62.63 -0.23 -3.48 16 21 C 0.25 1.89 12.63 -90.66 -1.14 0.74 16 22 N -0.55 -5.61 11.19 -15.83 -0.18 -5.79 16 23 C 0.19 1.95 13.03 -91.82 -1.20 0.76 16 24 N -0.31 -3.56 12.57 29.29 0.37 -3.19 16 25 C 0.13 2.77 6.93 -2.41 -0.02 2.75 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.05 1.31 7.39 -51.93 -0.38 0.93 16 28 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 31 H 0.40 3.80 8.57 -40.82 -0.35 3.45 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.10 0.20 8.09 -51.93 -0.42 -0.22 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.22 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.22 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -37.36 345.80 -9.57 -46.93 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.12 Total: -0.62 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -3.41 Total: 5.77 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.31 Total: -64.87 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.36 -9.57 -46.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490567946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.029 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds