Wall clock time and date at job start Tue Mar 31 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47027 * 125.65234 * 359.74831 * 9 7 2 11 11 C 1.54324 * 107.27233 * 181.01966 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.08998 * 111.00887 * 82.56211 * 12 11 10 14 14 N 1.46495 * 111.00360 * 206.42345 * 12 11 10 15 15 C 1.34775 * 119.99841 * 204.99717 * 14 12 11 16 16 O 1.21283 * 120.00095 * 359.97438 * 15 14 12 17 17 C 1.50709 * 119.99853 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.46802 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47028 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47485 * 180.02562 * 19 18 17 21 21 C 1.34427 * 126.82602 * 124.70970 * 20 19 18 22 22 N 1.30832 * 108.07770 * 179.89458 * 21 20 19 23 23 C 1.33236 * 109.83155 * 0.38179 * 22 21 20 24 24 N 1.30713 * 108.94555 * 359.76074 * 23 22 21 25 25 C 1.47430 * 125.64889 * 179.43985 * 9 7 2 26 26 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.87929 * 300.44400 * 10 9 7 28 28 H 1.09004 * 109.88144 * 61.60709 * 10 9 7 29 29 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 30 30 H 1.08997 * 110.72037 * 263.65355 * 11 10 9 31 31 H 0.96996 * 119.99949 * 24.99281 * 14 12 11 32 32 H 1.08993 * 109.47261 * 300.00013 * 17 15 14 33 33 H 1.09000 * 109.46677 * 60.00725 * 17 15 14 34 34 H 1.09001 * 109.47328 * 299.99809 * 18 17 15 35 35 H 1.08996 * 109.47095 * 60.00102 * 18 17 15 36 36 H 1.09007 * 109.47344 * 300.00332 * 19 18 17 37 37 H 1.09005 * 109.47264 * 59.99756 * 19 18 17 38 38 H 1.07995 * 125.95794 * 0.03724 * 21 20 19 39 39 H 1.08003 * 125.53147 * 179.73109 * 23 22 21 40 40 H 1.08999 * 110.36600 * 274.74731 * 25 9 7 41 41 H 1.09003 * 110.36161 * 37.06348 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1377 -2.5327 -0.0080 11 6 -0.4486 -4.0442 0.0105 12 6 0.8515 -4.6594 0.5923 13 1 0.8562 -4.6053 1.6810 14 7 1.0288 -6.0402 0.1364 15 6 1.7588 -6.9036 0.8699 16 8 2.2693 -6.5372 1.9073 17 6 1.9407 -8.3243 0.4012 18 6 2.8034 -9.0872 1.4085 19 6 2.9886 -10.5293 0.9324 20 7 3.8141 -11.2600 1.8971 21 6 3.4966 -12.4058 2.5245 22 7 4.4972 -12.7342 3.3009 23 6 5.4636 -11.8223 3.2029 24 7 5.0919 -10.8994 2.3551 25 6 1.9333 -3.7311 -0.0198 26 1 -0.4850 0.8401 0.0004 27 1 -0.5579 -2.0568 0.8780 28 1 -0.5542 -2.0796 -0.9076 29 1 -1.2989 -4.2550 0.6592 30 1 -0.6346 -4.4120 -0.9985 31 1 0.6208 -6.3331 -0.6934 32 1 0.9670 -8.8070 0.3182 33 1 2.4312 -8.3257 -0.5723 34 1 3.7772 -8.6046 1.4919 35 1 2.3126 -9.0857 2.3817 36 1 2.0150 -11.0122 0.8485 37 1 3.4796 -10.5304 -0.0409 38 1 2.5772 -12.9598 2.4062 39 1 6.4018 -11.8421 3.7376 40 1 2.1623 -4.0340 -1.0415 41 1 2.8352 -3.7452 0.5922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490567946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:50 Heat of formation + Delta-G solvation = 50.078688 kcal Electronic energy + Delta-G solvation = -22467.971380 eV Core-core repulsion = 18998.427924 eV Total energy + Delta-G solvation = -3469.543457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.93251 -40.93298 -38.97741 -36.48159 -35.59534 -33.84004 -33.03676 -32.13300 -31.04109 -29.23453 -27.89380 -26.37313 -24.16411 -22.87165 -22.34063 -22.05456 -21.72941 -21.19190 -19.06343 -18.47947 -17.75373 -17.22884 -16.97265 -16.65538 -16.47309 -15.93862 -15.82631 -15.26007 -15.14398 -14.89409 -14.46998 -14.17225 -14.00362 -13.74032 -13.62957 -13.32573 -12.98673 -12.76971 -12.74282 -12.55370 -12.38897 -12.12294 -12.09933 -11.83666 -11.79928 -11.59562 -10.99677 -10.88185 -10.77292 -10.74065 -10.56797 -10.06753 -8.94863 -7.89307 -5.25570 0.74859 1.43236 1.46933 1.49455 1.53240 1.69830 2.04245 2.20361 2.48705 3.28896 3.51592 3.56850 3.66549 3.70055 3.87065 3.93008 4.03639 4.15442 4.18258 4.20300 4.37530 4.51683 4.58544 4.60525 4.70819 4.74561 4.84769 4.97066 5.04560 5.11121 5.27050 5.34411 5.39004 5.49670 5.56053 5.63484 5.71271 6.00858 6.16033 6.65609 7.06522 7.15913 7.36347 7.72027 8.35101 9.20456 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033949 B = 0.002361 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.568613 B =11859.026900 C =12452.672909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.628 5.628 10 C 0.182 3.818 11 C -0.126 4.126 12 C 0.145 3.855 13 H 0.068 0.932 14 N -0.702 5.702 15 C 0.502 3.498 16 O -0.598 6.598 17 C -0.121 4.121 18 C -0.111 4.111 19 C 0.129 3.871 20 N -0.383 5.383 21 C 0.260 3.740 22 N -0.584 5.584 23 C 0.186 3.814 24 N -0.359 5.359 25 C 0.127 3.873 26 H 0.249 0.751 27 H 0.011 0.989 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.420 0.580 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.266 0.734 39 H 0.233 0.767 40 H 0.035 0.965 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -27.425 -2.817 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.355 5.355 10 C 0.057 3.943 11 C -0.165 4.165 12 C 0.038 3.962 13 H 0.087 0.913 14 N -0.354 5.354 15 C 0.291 3.709 16 O -0.478 6.478 17 C -0.161 4.161 18 C -0.150 4.150 19 C 0.008 3.992 20 N -0.174 5.174 21 C -0.036 4.036 22 N -0.312 5.312 23 C -0.117 4.117 24 N -0.187 5.187 25 C 0.000 4.000 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.258 0.742 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.171 0.829 37 H 0.124 0.876 38 H 0.281 0.719 39 H 0.249 0.751 40 H 0.053 0.947 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.278 -26.581 -2.157 26.670 hybrid contribution 0.319 1.527 -0.029 1.560 sum 0.597 -25.054 -2.186 25.157 Atomic orbital electron populations 1.70149 1.06119 1.25562 1.57820 1.25660 0.96756 1.00965 1.02241 0.85133 0.77215 0.78674 0.78189 1.20077 1.21512 1.20688 1.19376 0.90855 0.83867 1.43778 0.90647 1.44690 1.02789 1.00769 1.87204 1.20966 0.83326 0.91715 0.98293 1.22979 0.96226 0.94977 1.02288 1.21773 0.95347 0.80934 0.98167 0.91329 1.45782 1.53191 1.09557 1.26881 1.21635 0.76727 0.89351 0.83233 1.90739 1.49922 1.80316 1.26838 1.21604 1.04610 0.88783 1.01093 1.21444 1.00124 0.94398 0.98994 1.22198 0.95736 0.91093 0.90143 1.50772 1.12683 1.19683 1.34234 1.26999 1.00420 0.86944 0.89237 1.70529 1.03080 1.31098 1.26501 1.26470 1.00646 0.88219 0.96321 1.78029 0.96853 1.25182 1.18663 1.21999 0.95133 0.85381 0.97443 0.94146 0.97092 0.96371 0.89382 0.88606 0.74152 0.83898 0.85355 0.93706 0.92809 0.82906 0.87621 0.71871 0.75120 0.94728 0.96271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.31 21.65 0.22 -57.13 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 46.75 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -14.60 10.28 84.04 0.86 -13.73 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -33.35 3.39 -691.51 -2.35 -35.70 16 10 C 0.18 8.88 5.37 86.73 0.47 9.34 16 11 C -0.13 -4.17 6.59 31.78 0.21 -3.97 16 12 C 0.14 5.00 3.44 46.46 0.16 5.16 16 13 H 0.07 2.79 7.54 -2.39 -0.02 2.78 16 14 N -0.70 -16.28 5.19 -435.60 -2.26 -18.55 16 15 C 0.50 12.27 7.83 87.66 0.69 12.96 16 16 O -0.60 -22.21 15.62 -3.04 -0.05 -22.26 16 17 C -0.12 -1.28 5.70 29.85 0.17 -1.11 16 18 C -0.11 -1.70 4.72 30.59 0.14 -1.56 16 19 C 0.13 0.95 6.55 86.38 0.57 1.51 16 20 N -0.38 -5.85 3.69 -352.07 -1.30 -7.15 16 21 C 0.26 3.23 12.63 180.36 2.28 5.51 16 22 N -0.58 -11.31 11.19 -204.01 -2.28 -13.59 16 23 C 0.19 3.76 13.03 180.77 2.36 6.11 16 24 N -0.36 -8.21 12.57 -61.25 -0.77 -8.98 16 25 C 0.13 5.49 6.93 86.93 0.60 6.09 16 26 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 27 H 0.01 0.60 7.39 -2.39 -0.02 0.58 16 28 H 0.02 0.97 7.50 -2.38 -0.02 0.95 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.10 2.55 8.01 -2.39 -0.02 2.54 16 31 H 0.42 6.02 8.57 -92.71 -0.79 5.22 16 32 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.15 -0.38 8.09 -2.38 -0.02 -0.40 16 37 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.27 0.18 8.06 -2.91 -0.02 0.15 16 39 H 0.23 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -89.63 345.80 2.45 -87.18 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 0.24 Total: 4.28 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 8.97 Total: 23.12 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -8.74 Total: -141.10 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -89.63 2.45 -87.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490567946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.263 kcal (2) G-P(sol) polarization free energy of solvation -89.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds