Wall clock time and date at job start Tue Mar 31 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47475 * 270.00026 * 3 2 1 5 5 H 1.48503 * 109.47008 * 30.00146 * 3 2 1 6 6 H 1.48505 * 109.47433 * 149.99766 * 3 2 1 7 7 C 1.38813 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99892 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46908 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91354 * 57.45399 * 11 10 9 13 13 C 1.55157 * 111.00647 * 293.54681 * 11 10 9 14 14 C 1.54323 * 102.94177 * 206.42431 * 13 11 10 15 15 N 1.47019 * 107.27351 * 22.19786 * 14 13 11 16 16 C 1.34775 * 125.65308 * 181.10626 * 15 14 13 17 17 O 1.21277 * 120.00357 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99412 * 359.97010 * 16 15 14 19 19 C 1.53004 * 109.46849 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.46943 * 180.02562 * 19 18 16 21 21 N 1.33235 * 125.52984 * 89.99880 * 20 19 18 22 22 C 1.30829 * 109.82960 * 179.97438 * 21 20 19 23 23 N 1.34427 * 108.07769 * 0.02562 * 22 21 20 24 24 H 0.97003 * 126.82164 * 179.97438 * 23 22 21 25 25 N 1.30715 * 125.52288 * 269.69555 * 20 19 18 26 26 C 1.47432 * 108.70400 * 1.05613 * 15 14 13 27 27 H 0.96994 * 120.00017 * 0.02562 * 1 2 3 28 28 H 0.96993 * 119.99741 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46740 * 60.00831 * 10 9 7 30 30 H 1.09000 * 109.47766 * 300.00716 * 10 9 7 31 31 H 1.08997 * 110.72139 * 324.79293 * 13 11 10 32 32 H 1.09002 * 110.71791 * 87.88133 * 13 11 10 33 33 H 1.08997 * 109.88122 * 141.61293 * 14 13 11 34 34 H 1.08996 * 109.88201 * 262.77712 * 14 13 11 35 35 H 1.08997 * 109.47414 * 300.00322 * 18 16 15 36 36 H 1.09001 * 109.47168 * 60.00377 * 18 16 15 37 37 H 1.09004 * 109.46876 * 299.99718 * 19 18 16 38 38 H 1.09001 * 109.47048 * 60.00156 * 19 18 16 39 39 H 1.08007 * 125.95857 * 180.02562 * 22 21 20 40 40 H 1.08998 * 110.36717 * 217.03612 * 26 15 14 41 41 H 1.08991 * 110.36739 * 94.70864 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3942 -4.7589 -0.8601 13 6 0.2630 -4.8673 1.3261 14 6 -0.1196 -6.3576 1.4458 15 7 0.8350 -7.1204 0.6282 16 6 0.8269 -8.4567 0.4529 17 8 1.6667 -8.9815 -0.2470 18 6 -0.2257 -9.2985 1.1269 19 6 -0.0099 -10.7698 0.7665 20 6 -1.0629 -11.6117 1.4399 21 7 -2.2495 -11.9274 0.9226 22 6 -2.9185 -12.6695 1.7671 23 7 -2.1579 -12.8452 2.8615 24 1 -2.3903 -13.3512 3.6559 25 7 -0.9580 -12.1552 2.6241 26 6 1.8019 -6.1813 0.0309 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6852 -3.7150 0.8879 30 1 2.6841 -3.7142 -0.8921 31 1 0.8883 -4.5611 2.1646 32 1 -0.6273 -4.2417 1.2622 33 1 -0.0529 -6.6750 2.4864 34 1 -1.1324 -6.5113 1.0734 35 1 -0.1529 -9.1751 2.2074 36 1 -1.2135 -8.9829 0.7909 37 1 -0.0826 -10.8935 -0.3141 38 1 0.9778 -11.0851 1.1028 39 1 -3.9091 -13.0710 1.6120 40 1 2.0620 -6.4964 -0.9797 41 1 2.6963 -6.1130 0.6499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491795777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:39 Heat of formation + Delta-G solvation = 56.573300 kcal Electronic energy + Delta-G solvation = -22389.196597 eV Core-core repulsion = 18919.934768 eV Total energy + Delta-G solvation = -3469.261829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.48299 -40.04848 -37.72977 -34.67382 -34.52833 -32.46053 -32.15866 -30.95077 -30.11753 -29.02585 -26.29490 -24.64380 -23.17578 -22.75432 -22.37100 -20.50457 -20.00064 -19.07963 -18.73230 -17.27060 -16.97686 -16.32818 -15.95199 -15.73194 -15.30870 -14.78889 -14.41474 -13.98203 -13.57006 -13.36073 -13.33067 -13.11829 -12.75148 -12.52650 -12.44237 -12.38209 -12.28201 -11.61528 -11.39017 -11.17592 -10.85836 -10.66294 -10.50435 -10.47508 -10.41582 -10.36549 -10.12713 -10.04781 -9.79248 -9.68017 -8.88015 -8.59749 -6.92966 -5.77377 -3.05878 1.20301 2.25663 2.46709 2.62582 3.01774 3.43911 3.49216 3.50590 3.74575 4.25528 4.45604 4.56868 4.65545 4.75532 4.79119 4.91089 5.01928 5.13661 5.29229 5.34163 5.51950 5.56998 5.66261 5.68020 5.73189 5.83732 5.92343 6.05337 6.06138 6.06806 6.13431 6.24180 6.40459 6.46620 6.60280 6.72926 6.85631 7.54259 7.69010 7.70142 8.14635 8.41707 9.53093 10.10190 10.45137 11.45575 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.041363 B = 0.002266 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.772762 B =12354.665555 C =12755.189218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.098 3.902 15 N -0.616 5.616 16 C 0.531 3.469 17 O -0.545 6.545 18 C -0.128 4.128 19 C -0.011 4.011 20 C 0.232 3.768 21 N -0.540 5.540 22 C 0.261 3.739 23 N -0.487 5.487 24 H 0.442 0.558 25 N -0.313 5.313 26 C 0.113 3.887 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.223 0.777 40 H 0.078 0.922 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 -25.641 6.602 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.103 0.897 13 C -0.159 4.159 14 C -0.025 4.025 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.423 6.423 18 C -0.169 4.169 19 C -0.051 4.051 20 C -0.050 4.050 21 N -0.268 5.268 22 C -0.038 4.038 23 N -0.205 5.205 24 H 0.287 0.713 25 N -0.142 5.142 26 C -0.010 4.010 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.239 0.761 40 H 0.096 0.904 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.055 -25.689 6.325 27.140 hybrid contribution -0.508 0.523 0.647 0.975 sum -6.562 -25.166 6.972 26.926 Atomic orbital electron populations 1.69654 1.05097 1.25654 1.57871 1.24739 0.95546 0.97707 1.03060 0.86179 0.78637 0.83783 0.77525 1.21729 1.21802 1.20767 1.19233 0.91070 0.84116 1.42556 0.91150 1.42305 1.05864 0.99824 1.89535 1.20550 0.92772 0.84892 0.98180 1.22571 0.98090 0.93736 0.98141 0.89735 1.22637 1.01662 0.93097 0.98474 1.22160 0.92754 0.92773 0.94783 1.48548 1.31551 1.05666 1.49228 1.20104 0.85785 0.80903 0.81284 1.90708 1.40084 1.71577 1.39917 1.21533 0.99420 0.93803 1.02132 1.19673 0.94273 0.90179 1.01014 1.24329 0.93681 0.97262 0.89743 1.70463 1.06028 1.18314 1.31972 1.26158 0.98854 0.95310 0.83494 1.48161 1.12648 1.41796 1.17883 0.71298 1.78055 1.02606 1.14743 1.18794 1.22265 0.91860 0.87852 0.99023 0.93528 0.78235 0.95969 0.95984 0.90210 0.89445 0.91553 0.91398 0.88723 0.88323 0.88045 0.88574 0.76065 0.90382 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.03 5.45 -59.91 -0.33 -18.36 16 10 C 0.16 3.19 5.71 -4.04 -0.02 3.17 16 11 C -0.11 -1.65 3.10 -88.46 -0.27 -1.92 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.12 -1.67 6.13 -24.90 -0.15 -1.82 16 14 C 0.10 1.11 6.49 -3.07 -0.02 1.09 16 15 N -0.62 -8.12 3.33 -170.52 -0.57 -8.69 16 16 C 0.53 7.12 7.85 -10.99 -0.09 7.03 16 17 O -0.54 -9.07 16.24 5.56 0.09 -8.98 16 18 C -0.13 -1.29 4.87 -27.88 -0.14 -1.43 16 19 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 20 C 0.23 2.47 7.39 -156.85 -1.16 1.31 16 21 N -0.54 -5.38 11.19 -11.97 -0.13 -5.51 16 22 C 0.26 1.51 13.13 -90.66 -1.19 0.32 16 23 N -0.49 -2.92 7.45 29.53 0.22 -2.70 16 24 H 0.44 0.95 8.96 -182.34 -1.63 -0.68 16 25 N -0.31 -3.19 12.80 32.42 0.41 -2.77 16 26 C 0.11 1.61 6.38 -2.52 -0.02 1.59 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.38 9.85 7.53 -40.82 -0.31 9.55 16 29 H 0.02 0.44 8.11 -51.93 -0.42 0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.22 0.13 8.06 -52.48 -0.42 -0.29 16 40 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 41 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -35.85 348.12 -10.19 -46.03 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.38 Total: 3.81 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.45 Total: 1.81 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 0.33 Total: -65.20 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.85 -10.19 -46.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491795777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.606 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds