Wall clock time and date at job start Tue Mar 31 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 120.00176 * 2 1 4 4 H 1.48499 * 109.47475 * 270.00026 * 3 2 1 5 5 H 1.48503 * 109.47008 * 30.00146 * 3 2 1 6 6 H 1.48505 * 109.47433 * 149.99766 * 3 2 1 7 7 C 1.38813 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99892 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46908 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91354 * 57.45399 * 11 10 9 13 13 C 1.55157 * 111.00647 * 293.54681 * 11 10 9 14 14 C 1.54323 * 102.94177 * 206.42431 * 13 11 10 15 15 N 1.47019 * 107.27351 * 22.19786 * 14 13 11 16 16 C 1.34775 * 125.65308 * 181.10626 * 15 14 13 17 17 O 1.21277 * 120.00357 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99412 * 359.97010 * 16 15 14 19 19 C 1.53004 * 109.46849 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.46943 * 180.02562 * 19 18 16 21 21 N 1.33235 * 125.52984 * 89.99880 * 20 19 18 22 22 C 1.30829 * 109.82960 * 179.97438 * 21 20 19 23 23 N 1.34427 * 108.07769 * 0.02562 * 22 21 20 24 24 H 0.97003 * 126.82164 * 179.97438 * 23 22 21 25 25 N 1.30715 * 125.52288 * 269.69555 * 20 19 18 26 26 C 1.47432 * 108.70400 * 1.05613 * 15 14 13 27 27 H 0.96994 * 120.00017 * 0.02562 * 1 2 3 28 28 H 0.96993 * 119.99741 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46740 * 60.00831 * 10 9 7 30 30 H 1.09000 * 109.47766 * 300.00716 * 10 9 7 31 31 H 1.08997 * 110.72139 * 324.79293 * 13 11 10 32 32 H 1.09002 * 110.71791 * 87.88133 * 13 11 10 33 33 H 1.08997 * 109.88122 * 141.61293 * 14 13 11 34 34 H 1.08996 * 109.88201 * 262.77712 * 14 13 11 35 35 H 1.08997 * 109.47414 * 300.00322 * 18 16 15 36 36 H 1.09001 * 109.47168 * 60.00377 * 18 16 15 37 37 H 1.09004 * 109.46876 * 299.99718 * 19 18 16 38 38 H 1.09001 * 109.47048 * 60.00156 * 19 18 16 39 39 H 1.08007 * 125.95857 * 180.02562 * 22 21 20 40 40 H 1.08998 * 110.36717 * 217.03612 * 26 15 14 41 41 H 1.08991 * 110.36739 * 94.70864 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3942 -4.7589 -0.8601 13 6 0.2630 -4.8673 1.3261 14 6 -0.1196 -6.3576 1.4458 15 7 0.8350 -7.1204 0.6282 16 6 0.8269 -8.4567 0.4529 17 8 1.6667 -8.9815 -0.2470 18 6 -0.2257 -9.2985 1.1269 19 6 -0.0099 -10.7698 0.7665 20 6 -1.0629 -11.6117 1.4399 21 7 -2.2495 -11.9274 0.9226 22 6 -2.9185 -12.6695 1.7671 23 7 -2.1579 -12.8452 2.8615 24 1 -2.3903 -13.3512 3.6559 25 7 -0.9580 -12.1552 2.6241 26 6 1.8019 -6.1813 0.0309 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6852 -3.7150 0.8879 30 1 2.6841 -3.7142 -0.8921 31 1 0.8883 -4.5611 2.1646 32 1 -0.6273 -4.2417 1.2622 33 1 -0.0529 -6.6750 2.4864 34 1 -1.1324 -6.5113 1.0734 35 1 -0.1529 -9.1751 2.2074 36 1 -1.2135 -8.9829 0.7909 37 1 -0.0826 -10.8935 -0.3141 38 1 0.9778 -11.0851 1.1028 39 1 -3.9091 -13.0710 1.6120 40 1 2.0620 -6.4964 -0.9797 41 1 2.6963 -6.1130 0.6499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491795777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:38 Heat of formation + Delta-G solvation = 32.202862 kcal Electronic energy + Delta-G solvation = -22390.253378 eV Core-core repulsion = 18919.934768 eV Total energy + Delta-G solvation = -3470.318611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.06221 -41.14318 -38.93360 -36.42662 -35.28979 -33.92945 -32.97944 -32.03065 -31.36131 -30.24871 -27.60564 -26.02878 -24.22538 -23.86322 -23.54666 -21.36016 -21.17279 -20.10622 -19.24605 -19.13938 -18.14268 -17.48468 -16.81229 -16.62209 -16.32385 -16.07666 -15.63777 -15.38412 -14.97199 -14.87661 -14.46144 -14.28270 -13.86296 -13.71288 -13.62003 -13.19392 -13.09151 -13.00707 -12.90922 -12.74233 -12.20255 -12.19800 -12.10514 -11.77287 -11.65890 -11.58659 -11.12845 -11.04461 -10.97583 -10.91597 -10.64176 -9.67470 -8.97718 -7.93696 -5.21851 0.65698 1.49267 1.50553 1.58371 1.58960 1.74736 1.86911 2.06839 2.57593 3.13925 3.39498 3.44705 3.66495 3.67128 3.78179 3.90257 4.04849 4.14600 4.30879 4.31154 4.34150 4.44668 4.52909 4.59202 4.67480 4.81991 4.85026 4.91245 4.97163 5.04138 5.09330 5.24927 5.26047 5.28121 5.38039 5.43050 5.52013 6.28338 6.28927 6.50494 7.09353 7.12268 7.35990 8.10941 8.35482 9.29708 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.041363 B = 0.002266 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.772762 B =12354.665555 C =12755.189218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.164 3.836 11 C -0.097 4.097 12 H 0.077 0.923 13 C -0.117 4.117 14 C 0.104 3.896 15 N -0.617 5.617 16 C 0.529 3.471 17 O -0.583 6.583 18 C -0.113 4.113 19 C -0.007 4.007 20 C 0.221 3.779 21 N -0.579 5.579 22 C 0.277 3.723 23 N -0.476 5.476 24 H 0.458 0.542 25 N -0.343 5.343 26 C 0.118 3.882 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.027 0.973 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.273 0.727 40 H 0.069 0.931 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 -26.823 7.749 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.095 0.905 13 C -0.155 4.155 14 C -0.017 4.017 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.463 6.463 18 C -0.153 4.153 19 C -0.047 4.047 20 C -0.062 4.062 21 N -0.308 5.308 22 C -0.021 4.021 23 N -0.195 5.195 24 H 0.307 0.693 25 N -0.174 5.174 26 C -0.005 4.005 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.288 0.712 40 H 0.088 0.912 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.978 -26.910 7.509 28.797 hybrid contribution -0.232 0.786 0.300 0.873 sum -7.210 -26.124 7.810 28.204 Atomic orbital electron populations 1.69799 1.06460 1.26062 1.59483 1.25533 0.96431 1.00972 1.03757 0.85159 0.77736 0.79624 0.77346 1.21601 1.22108 1.19530 1.19619 0.91500 0.85373 1.41167 0.90791 1.42470 1.05717 1.00846 1.89387 1.20651 0.93390 0.84324 0.97917 1.22356 0.97391 0.92867 0.99070 0.90450 1.22570 1.00907 0.95048 0.96991 1.22227 0.93031 0.90459 0.96032 1.48609 1.31549 1.05695 1.49183 1.20667 0.85848 0.80867 0.80711 1.90691 1.41748 1.72224 1.41667 1.21456 0.98538 0.92802 1.02547 1.19529 0.94203 0.90614 1.00361 1.24209 0.94079 0.97811 0.90071 1.70435 1.06364 1.20301 1.33735 1.27071 0.99719 0.93185 0.82113 1.48098 1.11476 1.41194 1.18754 0.69289 1.77950 1.04779 1.15746 1.18914 1.22089 0.92165 0.87343 0.98884 0.93984 0.79120 0.95537 0.96332 0.90763 0.90139 0.89047 0.89473 0.87152 0.87045 0.89178 0.89464 0.71194 0.91227 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -36.78 5.45 -343.44 -1.87 -38.66 16 10 C 0.16 6.37 5.71 86.38 0.49 6.87 16 11 C -0.10 -2.99 3.10 -9.40 -0.03 -3.02 16 12 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.12 -3.11 6.13 31.78 0.19 -2.92 16 14 C 0.10 2.12 6.49 86.73 0.56 2.68 16 15 N -0.62 -15.41 3.33 -811.80 -2.70 -18.12 16 16 C 0.53 13.70 7.85 87.66 0.69 14.39 16 17 O -0.58 -19.49 16.24 -3.02 -0.05 -19.54 16 18 C -0.11 -2.12 4.87 29.85 0.15 -1.97 16 19 C -0.01 -0.14 5.13 29.85 0.15 0.02 16 20 C 0.22 4.49 7.39 138.63 1.03 5.51 16 21 N -0.58 -10.58 11.19 -191.80 -2.15 -12.72 16 22 C 0.28 2.41 13.13 180.36 2.37 4.77 16 23 N -0.48 -4.58 7.45 -60.49 -0.45 -5.03 16 24 H 0.46 0.78 8.96 -213.10 -1.91 -1.13 16 25 N -0.34 -6.56 12.80 -51.33 -0.66 -7.21 16 26 C 0.12 3.32 6.38 86.86 0.55 3.88 16 27 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.38 19.59 7.53 -92.71 -0.70 18.89 16 29 H 0.03 1.02 8.11 -2.39 -0.02 1.00 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 2.06 8.01 -2.39 -0.02 2.04 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 39 H 0.27 -0.88 8.06 -2.91 -0.02 -0.90 16 40 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 41 H 0.07 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -77.80 348.12 0.34 -77.47 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -1.56 Total: 20.24 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 7.46 Total: 13.70 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -7.54 Total: -139.78 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -77.80 0.34 -77.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491795777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.668 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds