Wall clock time and date at job start Tue Mar 31 2020 03:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00213 * 2 1 4 4 C 1.53001 * 109.47286 * 270.00699 * 3 2 1 5 5 N 1.46498 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99981 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99703 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99878 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00228 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99762 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47363 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46762 * 120.00144 * 10 8 6 13 13 H 1.48504 * 109.46916 * 239.99733 * 10 8 6 14 14 C 1.34774 * 120.00075 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00072 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99867 * 359.97438 * 14 2 1 17 17 C 1.52999 * 109.47009 * 179.97438 * 16 14 2 18 18 N 1.46507 * 109.47241 * 180.02562 * 17 16 14 19 19 C 1.35763 * 119.62574 * 90.00014 * 18 17 16 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02413 * 18 17 16 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.08998 * 109.47057 * 269.99921 * 1 2 3 26 26 H 1.08999 * 109.47350 * 29.99852 * 1 2 3 27 27 H 1.08994 * 109.47329 * 149.99869 * 1 2 3 28 28 H 1.09001 * 109.46953 * 30.00031 * 3 2 1 29 29 H 1.08998 * 109.47460 * 150.00658 * 3 2 1 30 30 H 1.09004 * 109.47082 * 299.99472 * 4 3 2 31 31 H 1.08993 * 109.47558 * 59.99422 * 4 3 2 32 32 H 0.97003 * 119.99933 * 359.97438 * 5 4 3 33 33 H 0.97005 * 120.00377 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46770 * 60.00416 * 16 14 2 35 35 H 1.08991 * 109.47572 * 300.00317 * 16 14 2 36 36 H 1.08991 * 109.47264 * 60.00383 * 17 16 14 37 37 H 1.09001 * 109.47142 * 300.00018 * 17 16 14 38 38 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 40 40 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 41 41 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1855 2.9789 -1.4425 6 6 3.5283 3.5716 -2.6285 7 1 3.2585 3.1037 -3.5637 8 6 4.2224 4.7736 -2.6284 9 7 4.5516 5.3435 -1.4886 10 14 4.6906 5.5818 -4.2462 11 1 4.2084 4.7460 -5.3749 12 1 4.0676 6.9274 -4.3258 13 1 6.1677 5.7148 -4.3238 14 6 2.1389 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0010 16 6 1.3853 -2.4723 -0.0005 17 6 2.3796 -3.6352 -0.0018 18 7 1.6471 -4.9040 -0.0024 19 6 1.3110 -5.4843 -1.1829 20 6 0.6295 -6.6534 -1.2088 21 6 0.2740 -7.2831 -0.0077 22 6 0.6121 -6.6983 1.1772 23 6 1.3144 -5.4810 1.1680 24 8 1.6236 -4.9470 2.2210 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6084 2.0283 0.5138 29 1 3.1500 1.1383 0.5137 30 1 3.0415 0.9509 -1.9564 31 1 1.5000 1.8408 -1.9563 32 1 3.4280 3.3988 -0.6024 33 1 5.0370 6.1834 -1.4886 34 1 0.7584 -2.5298 -0.8904 35 1 0.7590 -2.5302 0.8896 36 1 3.0068 -3.5779 0.8877 37 1 3.0056 -3.5770 -0.8923 38 1 1.5862 -5.0055 -2.1110 39 1 0.3635 -7.1029 -2.1540 40 1 -0.2654 -8.2187 -0.0206 41 1 0.3433 -7.1660 2.1128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493571482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:45 Heat of formation + Delta-G solvation = -17.702469 kcal Electronic energy + Delta-G solvation = -22705.585157 eV Core-core repulsion = 19200.809738 eV Total energy + Delta-G solvation = -3504.775419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66381 -39.84137 -37.17210 -36.12309 -35.29208 -34.37636 -31.89922 -31.02313 -30.12009 -28.29938 -26.65356 -25.44477 -24.09886 -23.49877 -22.40590 -21.39000 -19.16357 -18.08168 -17.62855 -17.17844 -16.93660 -16.39312 -16.24076 -15.97216 -15.37733 -14.84667 -14.65606 -14.44350 -14.03515 -13.65129 -13.49062 -13.14770 -12.92644 -12.87650 -12.84169 -12.64740 -12.35632 -12.29219 -12.02221 -11.52582 -11.26653 -11.01539 -10.90118 -10.70583 -10.51014 -10.20377 -10.08761 -9.84523 -9.69519 -8.88694 -8.56499 -8.31385 -6.94155 -5.76779 -3.06286 0.48398 1.54659 2.25520 2.63031 3.04832 3.35132 3.43448 3.48707 3.51262 4.19593 4.31331 4.42263 4.53623 4.55749 4.61293 4.75209 4.88433 4.94512 4.98251 5.13151 5.29636 5.40419 5.48835 5.56157 5.59936 5.63062 5.64282 5.74856 5.81953 5.91873 6.00955 6.11044 6.17289 6.50491 6.71111 6.77220 6.87183 7.41896 7.69590 7.75392 8.18283 8.41549 9.52478 10.08631 10.43571 11.46160 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.002539 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.383710 B =11026.306234 C =11339.740467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.106 3.894 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.516 3.484 15 O -0.532 6.532 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.495 5.495 19 C 0.137 3.863 20 C -0.238 4.238 21 C -0.017 4.017 22 C -0.246 4.246 23 C 0.510 3.490 24 O -0.548 6.548 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 -25.357 1.349 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.581 5.581 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.205 5.205 19 C 0.009 3.991 20 C -0.261 4.261 21 C -0.039 4.039 22 C -0.268 4.268 23 C 0.312 3.688 24 O -0.431 6.431 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.592 -24.929 1.873 27.991 hybrid contribution 0.110 0.625 -0.760 0.990 sum -12.482 -24.303 1.114 27.344 Atomic orbital electron populations 1.21834 0.79581 1.03410 1.01845 1.47789 1.07001 1.06357 1.73167 1.21744 0.97560 0.83045 0.99234 1.20892 0.95042 0.89435 0.93097 1.42225 1.67037 1.21652 1.06640 1.19240 1.29412 1.02333 0.85942 0.91161 1.24763 1.01255 0.98066 0.96963 1.69671 1.44975 1.19563 1.23912 0.86087 0.77945 0.79132 0.82839 1.20571 1.21829 1.21782 1.20213 0.87934 0.84958 0.76597 1.90761 1.13656 1.87213 1.49242 1.21957 0.99656 0.92596 1.05104 1.21773 0.93751 0.79327 1.06906 1.45659 1.46688 1.21317 1.06884 1.22067 0.93436 0.93862 0.89711 1.20668 1.08009 0.97782 0.99623 1.21451 0.92484 0.97954 0.91969 1.22145 1.07061 0.97452 1.00133 1.17226 0.81895 0.86848 0.82863 1.90992 1.56701 1.65863 1.29501 0.92479 0.90341 0.91362 0.90370 0.89571 0.95995 0.96488 0.78232 0.93497 0.88457 0.88115 0.87096 0.87931 0.81955 0.83759 0.84882 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.85 0.61 1.34 16 2 N -0.61 -8.45 2.87 -181.58 -0.52 -8.97 16 3 C 0.11 1.84 5.52 -4.04 -0.02 1.81 16 4 C 0.14 3.02 6.58 -4.04 -0.03 3.00 16 5 N -0.73 -19.15 5.60 -59.91 -0.34 -19.48 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 10 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 C 0.52 7.40 7.67 -10.99 -0.08 7.31 16 15 O -0.53 -9.86 15.56 5.56 0.09 -9.77 16 16 C -0.15 -1.51 4.58 -27.88 -0.13 -1.64 16 17 C 0.10 1.06 4.62 -4.04 -0.02 1.05 16 18 N -0.50 -4.52 2.58 -119.77 -0.31 -4.82 16 19 C 0.14 0.80 10.28 -16.84 -0.17 0.62 16 20 C -0.24 -1.17 10.01 -39.88 -0.40 -1.57 16 21 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 22 C -0.25 -2.13 9.99 -39.38 -0.39 -2.53 16 23 C 0.51 5.94 7.41 -15.44 -0.11 5.83 16 24 O -0.55 -8.69 16.64 4.87 0.08 -8.61 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 29 H 0.09 1.66 7.42 -51.93 -0.39 1.28 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.10 0.71 7.40 -51.93 -0.38 0.32 16 35 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.11 1.44 7.35 -51.93 -0.38 1.06 16 37 H 0.10 0.93 7.97 -51.93 -0.41 0.51 16 38 H 0.16 0.48 8.04 -52.49 -0.42 0.05 16 39 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -37.46 350.96 -7.38 -44.84 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.98 Total: 4.60 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.39 Total: 7.21 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.44 Total: -61.23 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.46 -7.38 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493571482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.135 kcal (2) G-P(sol) polarization free energy of solvation -37.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds