Wall clock time and date at job start Tue Mar 31 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00213 * 2 1 4 4 C 1.53001 * 109.47286 * 270.00699 * 3 2 1 5 5 N 1.46498 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99981 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99703 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99878 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00228 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99762 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47363 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46762 * 120.00144 * 10 8 6 13 13 H 1.48504 * 109.46916 * 239.99733 * 10 8 6 14 14 C 1.34774 * 120.00075 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00072 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99867 * 359.97438 * 14 2 1 17 17 C 1.52999 * 109.47009 * 179.97438 * 16 14 2 18 18 N 1.46507 * 109.47241 * 180.02562 * 17 16 14 19 19 C 1.35763 * 119.62574 * 90.00014 * 18 17 16 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02413 * 18 17 16 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.08998 * 109.47057 * 269.99921 * 1 2 3 26 26 H 1.08999 * 109.47350 * 29.99852 * 1 2 3 27 27 H 1.08994 * 109.47329 * 149.99869 * 1 2 3 28 28 H 1.09001 * 109.46953 * 30.00031 * 3 2 1 29 29 H 1.08998 * 109.47460 * 150.00658 * 3 2 1 30 30 H 1.09004 * 109.47082 * 299.99472 * 4 3 2 31 31 H 1.08993 * 109.47558 * 59.99422 * 4 3 2 32 32 H 0.97003 * 119.99933 * 359.97438 * 5 4 3 33 33 H 0.97005 * 120.00377 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46770 * 60.00416 * 16 14 2 35 35 H 1.08991 * 109.47572 * 300.00317 * 16 14 2 36 36 H 1.08991 * 109.47264 * 60.00383 * 17 16 14 37 37 H 1.09001 * 109.47142 * 300.00018 * 17 16 14 38 38 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 40 40 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 41 41 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1855 2.9789 -1.4425 6 6 3.5283 3.5716 -2.6285 7 1 3.2585 3.1037 -3.5637 8 6 4.2224 4.7736 -2.6284 9 7 4.5516 5.3435 -1.4886 10 14 4.6906 5.5818 -4.2462 11 1 4.2084 4.7460 -5.3749 12 1 4.0676 6.9274 -4.3258 13 1 6.1677 5.7148 -4.3238 14 6 2.1389 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0010 16 6 1.3853 -2.4723 -0.0005 17 6 2.3796 -3.6352 -0.0018 18 7 1.6471 -4.9040 -0.0024 19 6 1.3110 -5.4843 -1.1829 20 6 0.6295 -6.6534 -1.2088 21 6 0.2740 -7.2831 -0.0077 22 6 0.6121 -6.6983 1.1772 23 6 1.3144 -5.4810 1.1680 24 8 1.6236 -4.9470 2.2210 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6084 2.0283 0.5138 29 1 3.1500 1.1383 0.5137 30 1 3.0415 0.9509 -1.9564 31 1 1.5000 1.8408 -1.9563 32 1 3.4280 3.3988 -0.6024 33 1 5.0370 6.1834 -1.4886 34 1 0.7584 -2.5298 -0.8904 35 1 0.7590 -2.5302 0.8896 36 1 3.0068 -3.5779 0.8877 37 1 3.0056 -3.5770 -0.8923 38 1 1.5862 -5.0055 -2.1110 39 1 0.3635 -7.1029 -2.1540 40 1 -0.2654 -8.2187 -0.0206 41 1 0.3433 -7.1660 2.1128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493571482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:43 Heat of formation + Delta-G solvation = -44.368729 kcal Electronic energy + Delta-G solvation = -22706.741493 eV Core-core repulsion = 19200.809738 eV Total energy + Delta-G solvation = -3505.931755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.36877 -40.98847 -37.97079 -37.50948 -36.11420 -36.03148 -33.53594 -32.23955 -30.74579 -29.83158 -27.61651 -26.61489 -25.28014 -24.56595 -23.47294 -22.78264 -20.32476 -19.25276 -18.81014 -18.28272 -17.77121 -17.40742 -17.12516 -16.98756 -16.56509 -16.33227 -15.55874 -15.48154 -15.15167 -15.11842 -14.99501 -14.58255 -14.28653 -13.85527 -13.79843 -13.24953 -13.23642 -13.09299 -12.91599 -12.85376 -12.72704 -12.67144 -12.35016 -12.27768 -12.09474 -11.88318 -11.19968 -11.00880 -11.00251 -10.90395 -9.76260 -9.08408 -8.95358 -7.99149 -5.30319 -0.04743 0.95091 1.45428 1.47842 1.50288 1.51243 1.57980 2.01137 2.54851 2.71287 3.34340 3.43618 3.63367 3.68550 3.87360 3.99189 4.04748 4.10886 4.19970 4.20682 4.24752 4.34966 4.39845 4.49588 4.54389 4.65011 4.71573 4.76025 4.91235 4.98547 5.07313 5.11002 5.23680 5.39918 5.43792 5.48705 5.69610 6.13074 6.22159 6.32056 7.00075 7.06568 7.28141 8.00037 8.24630 9.24544 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.002539 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.383710 B =11026.306234 C =11339.740467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.120 3.880 4 C 0.151 3.849 5 N -0.745 5.745 6 C -0.248 4.248 7 H 0.076 0.924 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.979 3.021 11 H -0.264 1.264 12 H -0.288 1.288 13 H -0.293 1.293 14 C 0.510 3.490 15 O -0.584 6.584 16 C -0.134 4.134 17 C 0.108 3.892 18 N -0.492 5.492 19 C 0.128 3.872 20 C -0.226 4.226 21 C 0.008 3.992 22 C -0.281 4.281 23 C 0.491 3.509 24 O -0.614 6.614 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.004 0.996 31 H 0.033 0.967 32 H 0.375 0.625 33 H 0.253 0.747 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.198 0.802 39 H 0.183 0.817 40 H 0.168 0.832 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.871 -27.215 -1.550 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C -0.004 4.004 4 C 0.023 3.977 5 N -0.388 5.388 6 C -0.380 4.380 7 H 0.094 0.906 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.808 3.192 11 H -0.189 1.189 12 H -0.215 1.215 13 H -0.221 1.221 14 C 0.298 3.702 15 O -0.464 6.464 16 C -0.175 4.175 17 C -0.015 4.015 18 N -0.201 5.201 19 C 0.002 3.998 20 C -0.248 4.248 21 C -0.014 4.014 22 C -0.303 4.303 23 C 0.297 3.703 24 O -0.502 6.502 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.206 0.794 33 H 0.062 0.938 34 H 0.155 0.845 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.215 0.785 39 H 0.200 0.800 40 H 0.185 0.815 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.057 -26.846 -1.078 30.799 hybrid contribution 0.792 1.073 0.061 1.335 sum -14.265 -25.773 -1.017 29.475 Atomic orbital electron populations 1.22155 0.76427 1.05180 1.03439 1.47884 1.08825 1.04899 1.72546 1.21358 0.97274 0.85204 0.96570 1.20938 0.94428 0.86815 0.95485 1.42440 1.67607 1.23158 1.05639 1.19638 1.28906 1.02505 0.86941 0.90609 1.25667 1.01729 0.98930 1.00534 1.69831 1.46039 1.19926 1.26181 0.84993 0.77117 0.78070 0.79062 1.18853 1.21523 1.22054 1.21003 0.87585 0.86308 0.75257 1.90738 1.16136 1.87997 1.51527 1.21870 0.99145 0.89522 1.06929 1.21599 0.93854 0.80347 1.05675 1.45572 1.46196 1.20764 1.07550 1.22772 0.93224 0.94444 0.89401 1.21203 1.06034 0.96829 1.00716 1.21892 0.90148 0.98350 0.90986 1.22107 1.09210 0.97293 1.01651 1.17731 0.82150 0.87703 0.82742 1.90944 1.59882 1.67694 1.31688 0.91012 0.89993 0.88188 0.88866 0.92420 0.97822 0.94897 0.79367 0.93815 0.84479 0.87942 0.90966 0.86611 0.78519 0.79988 0.81474 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.24 127.77 1.31 2.43 16 2 N -0.61 -16.33 2.87 -846.78 -2.43 -18.77 16 3 C 0.12 4.17 5.52 86.38 0.48 4.65 16 4 C 0.15 6.35 6.58 86.38 0.57 6.92 16 5 N -0.75 -39.61 5.60 -343.46 -1.92 -41.54 16 6 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 7 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 8 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 9 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 10 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 14 C 0.51 14.53 7.67 87.66 0.67 15.20 16 15 O -0.58 -22.57 15.56 -3.03 -0.05 -22.62 16 16 C -0.13 -2.48 4.58 29.85 0.14 -2.34 16 17 C 0.11 2.20 4.62 86.38 0.40 2.60 16 18 N -0.49 -8.45 2.58 -650.97 -1.68 -10.13 16 19 C 0.13 1.02 10.28 83.42 0.86 1.88 16 20 C -0.23 -1.15 10.01 22.08 0.22 -0.93 16 21 C 0.01 0.06 10.10 22.32 0.23 0.29 16 22 C -0.28 -4.73 9.99 22.40 0.22 -4.50 16 23 C 0.49 11.78 7.41 84.82 0.63 12.41 16 24 O -0.61 -21.15 16.64 -5.49 -0.09 -21.24 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 27 H 0.10 1.00 6.44 -2.39 -0.02 0.98 16 28 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 29 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 33 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 34 H 0.14 1.43 7.40 -2.39 -0.02 1.41 16 35 H 0.10 1.94 8.11 -2.39 -0.02 1.92 16 36 H 0.07 2.06 7.35 -2.39 -0.02 2.05 16 37 H 0.12 2.01 7.97 -2.39 -0.02 1.99 16 38 H 0.20 0.16 8.04 -2.91 -0.02 0.14 16 39 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 40 H 0.17 0.21 8.06 -2.91 -0.02 0.18 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -86.92 350.96 3.48 -83.45 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.32 Total: 21.31 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 7.02 Total: 21.13 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -5.76 Total: -130.70 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.14 Total: -43.86 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -86.92 3.48 -83.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493571482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.080 kcal (2) G-P(sol) polarization free energy of solvation -86.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds