Wall clock time and date at job start Tue Mar 31 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47097 * 2 1 4 4 C 1.46503 * 119.99726 * 269.99297 * 3 2 1 5 5 C 1.52997 * 109.47378 * 270.00237 * 4 3 2 6 6 N 1.46502 * 109.46843 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99492 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99494 * 179.97438 * 7 6 5 10 10 N 1.31624 * 119.99940 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00404 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47266 * 89.99789 * 11 9 7 13 13 H 1.48493 * 109.47491 * 209.99872 * 11 9 7 14 14 H 1.48505 * 109.46961 * 330.00202 * 11 9 7 15 15 C 1.34778 * 120.00035 * 90.00115 * 3 2 1 16 16 O 1.21273 * 119.99772 * 180.02562 * 15 3 2 17 17 C 1.50695 * 119.99864 * 359.97438 * 15 3 2 18 18 N 1.46507 * 109.47098 * 180.02562 * 17 15 3 19 19 C 1.35763 * 119.62574 * 89.99849 * 18 17 15 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02248 * 18 17 15 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47248 * 300.00160 * 1 2 3 27 27 H 1.08996 * 109.46672 * 60.00391 * 1 2 3 28 28 H 1.09000 * 109.47226 * 239.99682 * 2 1 3 29 29 H 1.09009 * 109.46966 * 120.00175 * 2 1 3 30 30 H 1.09001 * 109.46822 * 30.00326 * 4 3 2 31 31 H 1.08998 * 109.46560 * 150.00099 * 4 3 2 32 32 H 1.09002 * 109.47031 * 300.00368 * 5 4 3 33 33 H 1.09004 * 109.47105 * 60.00028 * 5 4 3 34 34 H 0.96999 * 120.00064 * 0.02562 * 6 5 4 35 35 H 0.96999 * 120.00058 * 180.02562 * 10 9 7 36 36 H 1.08991 * 109.47470 * 60.00573 * 17 15 3 37 37 H 1.09001 * 109.47078 * 300.00121 * 17 15 3 38 38 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 40 40 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 41 41 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9520 2.5223 -2.9788 7 6 5.1844 2.4502 -3.5714 8 1 5.9761 1.8836 -3.1038 9 6 5.4158 3.1046 -4.7735 10 7 6.6002 3.0349 -5.3434 11 14 4.0463 4.0840 -5.5826 12 1 4.0874 5.4868 -5.0970 13 1 4.2280 4.0649 -7.0563 14 1 2.7347 3.4790 -5.2376 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1601 1.1672 17 6 1.9913 1.3063 2.4722 18 7 2.3082 2.2041 3.5858 19 6 1.3407 3.0087 4.0954 20 6 1.6109 3.8505 5.1203 21 6 2.8984 3.8885 5.6739 22 6 3.8691 3.0796 5.1603 23 6 3.5560 2.2220 4.0919 24 8 4.4150 1.4927 3.6230 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 4.3884 2.2154 -0.9507 33 1 3.8746 0.7620 -1.8406 34 1 3.2410 3.0315 -3.3985 35 1 6.7620 3.4925 -6.1833 36 1 2.6211 0.4187 2.5303 37 1 0.9432 1.0126 2.5298 38 1 0.3462 2.9804 3.6753 39 1 0.8343 4.4893 5.5140 40 1 3.1201 4.5538 6.4953 41 1 4.8680 3.0977 5.5707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497493733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:39 Heat of formation + Delta-G solvation = -7.412663 kcal Electronic energy + Delta-G solvation = -23503.493816 eV Core-core repulsion = 19999.164596 eV Total energy + Delta-G solvation = -3504.329220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66162 -39.77082 -37.01950 -36.42595 -34.95571 -34.58071 -31.89614 -30.62780 -30.16033 -29.35719 -27.38799 -24.26439 -23.81687 -23.56939 -22.67276 -21.39836 -19.46026 -17.93134 -17.68890 -17.47850 -17.39101 -16.62281 -16.04753 -15.56760 -15.18113 -14.74425 -14.35028 -14.29171 -14.13384 -13.92544 -13.81734 -13.60821 -13.09045 -12.67341 -12.60245 -12.47360 -12.25546 -12.08969 -12.01327 -11.56355 -11.41105 -11.16028 -11.07118 -10.74256 -10.67535 -10.16313 -10.08464 -9.78614 -9.57136 -8.87354 -8.72359 -8.15171 -7.22206 -5.73366 -3.09843 0.63553 1.72928 2.23889 2.45552 2.91411 3.38308 3.42558 3.46941 3.53117 4.18851 4.26509 4.33774 4.59250 4.61676 4.63999 4.81494 4.90027 4.96256 5.05174 5.09459 5.14179 5.34544 5.41058 5.45518 5.58341 5.60418 5.72155 5.73862 5.83678 5.87115 5.92446 6.07369 6.28246 6.37847 6.62362 6.81715 6.86463 7.26842 7.89512 8.00683 8.05531 8.44760 9.23055 9.94902 10.14082 11.45041 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.003673 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.496032 B = 7620.476572 C = 8281.585487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.106 3.894 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.500 3.500 16 O -0.518 6.518 17 C 0.072 3.928 18 N -0.481 5.481 19 C 0.141 3.859 20 C -0.233 4.233 21 C -0.018 4.018 22 C -0.239 4.239 23 C 0.518 3.482 24 O -0.545 6.545 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.290 -4.540 22.604 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.336 5.336 4 C -0.016 4.016 5 C 0.018 3.982 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.285 3.715 16 O -0.393 6.393 17 C -0.054 4.054 18 N -0.192 5.192 19 C 0.014 3.986 20 C -0.257 4.257 21 C -0.039 4.039 22 C -0.261 4.261 23 C 0.320 3.680 24 O -0.427 6.427 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.260 -4.489 22.224 29.112 hybrid contribution -0.945 0.768 -0.784 1.448 sum -19.205 -3.720 21.440 29.023 Atomic orbital electron populations 1.22230 0.95661 1.02518 1.02537 1.21699 0.94386 0.82351 1.04181 1.47860 1.65544 1.14332 1.05904 1.21743 0.98317 0.98336 0.83244 1.20893 0.92703 0.95964 0.88688 1.42547 1.12412 1.61807 1.23165 1.19048 0.88254 1.27121 1.02854 0.89215 1.24673 0.96485 1.00388 0.97602 1.69708 1.20923 1.47855 1.19703 0.86517 0.82167 0.80710 0.78937 1.20998 1.21663 1.20405 1.20601 0.78364 0.87162 0.85335 1.90786 1.44061 1.17652 1.86812 1.21892 1.04429 0.94536 0.84523 1.45092 1.11175 1.34401 1.28522 1.21880 0.93591 0.89669 0.93420 1.20608 0.98776 1.04694 1.01585 1.21425 0.92186 0.94101 0.96227 1.22112 1.01983 1.01821 1.00144 1.17179 0.80732 0.85231 0.84875 1.90988 1.45038 1.43767 1.62875 0.91117 0.92787 0.91827 0.89153 0.90330 0.90327 0.89793 0.95022 0.95479 0.80713 0.93039 0.85227 0.86290 0.82421 0.83775 0.84813 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.10 0.83 5.93 -4.04 -0.02 0.81 16 3 N -0.60 -7.83 2.47 -173.69 -0.43 -8.26 16 4 C 0.11 1.71 5.52 -4.04 -0.02 1.69 16 5 C 0.15 3.08 6.58 -4.04 -0.03 3.05 16 6 N -0.75 -19.01 5.41 -59.91 -0.32 -19.33 16 7 C -0.24 -7.27 10.47 -15.06 -0.16 -7.43 16 8 H 0.09 2.89 8.06 -52.49 -0.42 2.47 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -30.33 13.97 55.49 0.78 -29.55 16 11 Si 0.89 22.72 27.74 -169.99 -4.71 18.01 16 12 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 15 C 0.50 7.16 7.74 -10.99 -0.09 7.08 16 16 O -0.52 -9.95 16.01 5.56 0.09 -9.86 16 17 C 0.07 0.72 4.37 -5.19 -0.02 0.70 16 18 N -0.48 -5.52 2.07 -121.07 -0.25 -5.77 16 19 C 0.14 1.14 10.28 -16.84 -0.17 0.97 16 20 C -0.23 -1.70 10.01 -39.88 -0.40 -2.10 16 21 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 22 C -0.24 -2.79 9.99 -39.38 -0.39 -3.18 16 23 C 0.52 7.60 7.40 -15.44 -0.11 7.49 16 24 O -0.55 -10.23 16.64 4.87 0.08 -10.15 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.28 7.22 -51.93 -0.37 -0.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.08 0.53 6.44 -51.92 -0.33 0.19 16 30 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 31 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 35 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 36 H 0.13 1.32 6.65 -51.93 -0.35 0.97 16 37 H 0.12 0.62 7.05 -51.93 -0.37 0.26 16 38 H 0.16 0.71 8.04 -52.49 -0.42 0.28 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -40.61 346.78 -6.92 -47.53 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.84 Total: 4.29 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.53 Total: 7.87 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.23 Total: -62.92 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.17 Total: -20.00 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -40.61 -6.92 -47.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497493733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.118 kcal (2) G-P(sol) polarization free energy of solvation -40.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds