Wall clock time and date at job start Tue Mar 31 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00095 * 2 1 4 4 C 1.53000 * 109.47340 * 269.99868 * 3 2 1 5 5 C 1.53000 * 109.47652 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47189 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99358 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00361 * 359.97438 * 7 6 5 9 9 C 1.38818 * 119.98980 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00811 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99397 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47130 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47342 * 120.00086 * 11 9 7 14 14 H 1.48501 * 109.47373 * 239.99994 * 11 9 7 15 15 C 1.34782 * 119.99995 * 179.97438 * 2 1 3 16 16 O 1.21615 * 119.99877 * 184.42601 * 15 2 1 17 17 C 1.47283 * 119.99782 * 4.43404 * 15 2 1 18 18 C 1.37989 * 120.88575 * 311.43211 * 17 15 2 19 19 N 1.34344 * 120.37533 * 180.02562 * 18 17 15 20 20 C 1.46498 * 118.80420 * 180.28896 * 19 18 17 21 21 C 1.35588 * 122.39123 * 0.02562 * 19 18 17 22 22 C 1.34869 * 121.79389 * 0.02562 * 21 19 18 23 23 C 1.41667 * 119.34152 * 359.97438 * 22 21 19 24 24 O 1.22084 * 121.06541 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47415 * 272.95427 * 1 2 3 26 26 H 1.08999 * 109.47363 * 32.95500 * 1 2 3 27 27 H 1.09005 * 109.47450 * 152.95839 * 1 2 3 28 28 H 1.09002 * 109.47564 * 29.99673 * 3 2 1 29 29 H 1.08994 * 109.47528 * 150.00022 * 3 2 1 30 30 H 1.08997 * 109.47317 * 300.00475 * 4 3 2 31 31 H 1.09010 * 109.46836 * 59.99794 * 4 3 2 32 32 H 1.08998 * 109.46756 * 300.00459 * 5 4 3 33 33 H 1.09003 * 109.46739 * 59.99941 * 5 4 3 34 34 H 0.96992 * 119.99790 * 0.02562 * 6 5 4 35 35 H 0.96998 * 120.00588 * 180.02562 * 10 9 7 36 36 H 1.08004 * 119.80742 * 0.02892 * 18 17 15 37 37 H 1.09006 * 109.46943 * 269.72999 * 20 19 18 38 38 H 1.08997 * 109.47402 * 29.72587 * 20 19 18 39 39 H 1.08998 * 109.47282 * 149.73005 * 20 19 18 40 40 H 1.07998 * 119.10099 * 180.02562 * 21 19 18 41 41 H 1.07996 * 120.32386 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4426 6 7 3.4606 3.4588 -2.8238 7 6 4.1337 4.6249 -3.0739 8 1 4.4846 5.2326 -2.2531 9 6 4.3650 5.0255 -4.3828 10 7 3.9379 4.2845 -5.3832 11 14 5.2826 6.6164 -4.7241 12 1 5.6539 7.2594 -3.4381 13 1 6.5122 6.3214 -5.5026 14 1 4.4116 7.5329 -5.5030 15 6 2.1389 -1.1672 0.0005 16 8 3.3523 -1.1688 0.0818 17 6 1.4057 -2.4409 -0.0975 18 6 0.3161 -2.6949 0.7101 19 7 -0.3449 -3.8604 0.6124 20 6 -1.5009 -4.0914 1.4821 21 6 0.0159 -4.8286 -0.2656 22 6 1.0666 -4.6778 -1.0975 23 6 1.8170 -3.4768 -1.0575 24 8 2.7742 -3.3071 -1.7960 25 1 -0.3634 0.0530 1.0263 26 1 -0.3634 0.8623 -0.5590 27 1 -0.3634 -0.9153 -0.4672 28 1 1.6084 2.0284 0.5138 29 1 3.1498 1.1384 0.5138 30 1 3.0415 0.9507 -1.9563 31 1 1.5000 1.8407 -1.9564 32 1 2.6275 3.7951 -0.9288 33 1 4.1694 2.9058 -0.9286 34 1 3.1452 2.9131 -3.5610 35 1 4.0999 4.5643 -6.2977 36 1 -0.0073 -1.9524 1.4247 37 1 -1.1707 -4.5629 2.4078 38 1 -1.9800 -3.1393 1.7103 39 1 -2.2121 -4.7438 0.9756 40 1 -0.5537 -5.7455 -0.2996 41 1 1.3328 -5.4645 -1.7879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498576352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:22 Heat of formation + Delta-G solvation = -9.451109 kcal Electronic energy + Delta-G solvation = -22982.973018 eV Core-core repulsion = 19478.555404 eV Total energy + Delta-G solvation = -3504.417613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40352 -39.46509 -37.97935 -35.93889 -34.76112 -32.99505 -32.69164 -31.65092 -29.59831 -27.47702 -26.98330 -25.75556 -24.27561 -23.18516 -22.48091 -20.85423 -19.76666 -18.00127 -17.75443 -17.20444 -16.93950 -16.35425 -15.91960 -15.81694 -15.07095 -14.70396 -14.52577 -14.35503 -13.99255 -13.82286 -13.64864 -13.18146 -13.14791 -13.11516 -12.90837 -12.60286 -12.52958 -12.26573 -11.83290 -11.78825 -10.82675 -10.78097 -10.62355 -10.27162 -10.09916 -9.96377 -9.86265 -9.62303 -9.36322 -8.76394 -8.57637 -8.22088 -6.79764 -5.64836 -2.93345 0.68057 1.01981 1.98045 2.75197 3.07826 3.51305 3.56222 3.58529 3.59134 3.80940 4.00395 4.27677 4.37412 4.42066 4.69466 4.70023 4.73239 4.92402 4.96764 5.11177 5.24848 5.38341 5.44573 5.47671 5.56332 5.67538 5.82129 5.99239 6.07112 6.20234 6.23382 6.40077 6.43063 6.52368 6.66295 7.00258 7.02958 7.43443 7.80776 7.97507 8.32996 8.53994 9.64599 10.24481 10.59159 11.58407 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.002804 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.359037 B = 9981.976471 C =10398.386084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.615 5.615 3 C 0.121 3.879 4 C -0.141 4.141 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C 0.578 3.422 16 O -0.512 6.512 17 C -0.289 4.289 18 C 0.161 3.839 19 N -0.478 5.478 20 C 0.056 3.944 21 C 0.126 3.874 22 C -0.265 4.265 23 C 0.406 3.594 24 O -0.485 6.485 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.169 0.831 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.164 0.836 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.938 -21.289 18.852 34.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.213 4.213 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.365 3.635 16 O -0.386 6.386 17 C -0.300 4.300 18 C 0.032 3.968 19 N -0.166 5.166 20 C -0.085 4.085 21 C 0.002 3.998 22 C -0.289 4.289 23 C 0.292 3.708 24 O -0.366 6.366 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.186 0.814 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.182 0.818 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.830 -21.087 18.657 33.872 hybrid contribution 0.101 0.646 -0.500 0.823 sum -18.729 -20.440 18.158 33.140 Atomic orbital electron populations 1.21936 0.80377 1.03743 1.01008 1.47812 1.06600 1.06239 1.74318 1.21478 0.97530 0.83037 0.98059 1.22074 1.01110 0.99036 0.95752 1.20536 0.96052 0.91823 0.88679 1.42379 1.68288 1.25937 1.01183 1.19300 1.27619 0.98032 0.91807 0.91104 1.24764 1.01860 0.99087 0.95588 1.69681 1.51674 1.38835 0.98094 0.86098 0.79193 0.83110 0.77709 1.20566 1.21881 1.21947 1.17545 0.86910 0.82477 0.76583 1.90830 1.13366 1.86715 1.47699 1.22466 1.00925 0.99934 1.06651 1.22225 0.90492 0.87232 0.96857 1.42636 1.27301 1.13614 1.33017 1.22466 0.86680 1.04670 0.94732 1.21681 0.96581 0.92238 0.89320 1.22461 0.99516 1.02063 1.04904 1.18208 0.84636 0.85601 0.82376 1.90855 1.26088 1.80322 1.39308 0.92909 0.90514 0.91183 0.90479 0.89577 0.91397 0.92074 0.96467 0.96177 0.78279 0.93620 0.81420 0.90166 0.89024 0.88923 0.81846 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.09 59.84 0.54 1.15 16 2 N -0.62 -8.32 2.87 -182.91 -0.53 -8.85 16 3 C 0.12 1.83 5.46 -4.04 -0.02 1.81 16 4 C -0.14 -2.67 5.65 -26.73 -0.15 -2.82 16 5 C 0.16 3.51 6.26 -4.04 -0.03 3.48 16 6 N -0.73 -20.53 5.60 -59.91 -0.34 -20.86 16 7 C -0.24 -7.11 9.99 -15.06 -0.15 -7.26 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 10 N -0.93 -30.07 13.06 55.49 0.72 -29.35 16 11 Si 0.91 23.59 29.55 -169.99 -5.02 18.57 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 14 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 15 C 0.58 9.53 7.08 -12.58 -0.09 9.44 16 16 O -0.51 -11.08 16.32 3.33 0.05 -11.03 16 17 C -0.29 -3.73 5.08 -102.72 -0.52 -4.25 16 18 C 0.16 1.08 7.87 -16.54 -0.13 0.95 16 19 N -0.48 -1.88 2.97 -124.39 -0.37 -2.25 16 20 C 0.06 -0.05 10.53 59.85 0.63 0.58 16 21 C 0.13 0.59 10.17 -17.09 -0.17 0.42 16 22 C -0.27 -2.50 10.01 -39.47 -0.40 -2.90 16 23 C 0.41 6.18 6.95 -34.68 -0.24 5.94 16 24 O -0.48 -10.22 17.30 2.91 0.05 -10.17 16 25 H 0.05 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.07 0.51 5.67 -51.93 -0.29 0.22 16 28 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.09 1.43 7.36 -51.93 -0.38 1.04 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.38 11.33 7.67 -40.82 -0.31 11.01 16 35 H 0.25 7.83 8.31 -40.82 -0.34 7.50 16 36 H 0.17 0.60 6.46 -52.48 -0.34 0.26 16 37 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 38 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 39 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 40 H 0.16 0.06 7.98 -52.49 -0.42 -0.36 16 41 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -44.13 348.32 -6.89 -51.02 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.89 Total: 1.77 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.82 Total: 5.90 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.51 Total: -61.31 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.10 Total: -21.19 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -44.13 -6.89 -51.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498576352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.566 kcal (2) G-P(sol) polarization free energy of solvation -44.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds