Wall clock time and date at job start Tue Mar 31 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00095 * 2 1 4 4 C 1.53000 * 109.47340 * 269.99868 * 3 2 1 5 5 C 1.53000 * 109.47652 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47189 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99358 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00361 * 359.97438 * 7 6 5 9 9 C 1.38818 * 119.98980 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00811 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99397 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47130 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47342 * 120.00086 * 11 9 7 14 14 H 1.48501 * 109.47373 * 239.99994 * 11 9 7 15 15 C 1.34782 * 119.99995 * 179.97438 * 2 1 3 16 16 O 1.21615 * 119.99877 * 184.42601 * 15 2 1 17 17 C 1.47283 * 119.99782 * 4.43404 * 15 2 1 18 18 C 1.37989 * 120.88575 * 311.43211 * 17 15 2 19 19 N 1.34344 * 120.37533 * 180.02562 * 18 17 15 20 20 C 1.46498 * 118.80420 * 180.28896 * 19 18 17 21 21 C 1.35588 * 122.39123 * 0.02562 * 19 18 17 22 22 C 1.34869 * 121.79389 * 0.02562 * 21 19 18 23 23 C 1.41667 * 119.34152 * 359.97438 * 22 21 19 24 24 O 1.22084 * 121.06541 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47415 * 272.95427 * 1 2 3 26 26 H 1.08999 * 109.47363 * 32.95500 * 1 2 3 27 27 H 1.09005 * 109.47450 * 152.95839 * 1 2 3 28 28 H 1.09002 * 109.47564 * 29.99673 * 3 2 1 29 29 H 1.08994 * 109.47528 * 150.00022 * 3 2 1 30 30 H 1.08997 * 109.47317 * 300.00475 * 4 3 2 31 31 H 1.09010 * 109.46836 * 59.99794 * 4 3 2 32 32 H 1.08998 * 109.46756 * 300.00459 * 5 4 3 33 33 H 1.09003 * 109.46739 * 59.99941 * 5 4 3 34 34 H 0.96992 * 119.99790 * 0.02562 * 6 5 4 35 35 H 0.96998 * 120.00588 * 180.02562 * 10 9 7 36 36 H 1.08004 * 119.80742 * 0.02892 * 18 17 15 37 37 H 1.09006 * 109.46943 * 269.72999 * 20 19 18 38 38 H 1.08997 * 109.47402 * 29.72587 * 20 19 18 39 39 H 1.08998 * 109.47282 * 149.73005 * 20 19 18 40 40 H 1.07998 * 119.10099 * 180.02562 * 21 19 18 41 41 H 1.07996 * 120.32386 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4426 6 7 3.4606 3.4588 -2.8238 7 6 4.1337 4.6249 -3.0739 8 1 4.4846 5.2326 -2.2531 9 6 4.3650 5.0255 -4.3828 10 7 3.9379 4.2845 -5.3832 11 14 5.2826 6.6164 -4.7241 12 1 5.6539 7.2594 -3.4381 13 1 6.5122 6.3214 -5.5026 14 1 4.4116 7.5329 -5.5030 15 6 2.1389 -1.1672 0.0005 16 8 3.3523 -1.1688 0.0818 17 6 1.4057 -2.4409 -0.0975 18 6 0.3161 -2.6949 0.7101 19 7 -0.3449 -3.8604 0.6124 20 6 -1.5009 -4.0914 1.4821 21 6 0.0159 -4.8286 -0.2656 22 6 1.0666 -4.6778 -1.0975 23 6 1.8170 -3.4768 -1.0575 24 8 2.7742 -3.3071 -1.7960 25 1 -0.3634 0.0530 1.0263 26 1 -0.3634 0.8623 -0.5590 27 1 -0.3634 -0.9153 -0.4672 28 1 1.6084 2.0284 0.5138 29 1 3.1498 1.1384 0.5138 30 1 3.0415 0.9507 -1.9563 31 1 1.5000 1.8407 -1.9564 32 1 2.6275 3.7951 -0.9288 33 1 4.1694 2.9058 -0.9286 34 1 3.1452 2.9131 -3.5610 35 1 4.0999 4.5643 -6.2977 36 1 -0.0073 -1.9524 1.4247 37 1 -1.1707 -4.5629 2.4078 38 1 -1.9800 -3.1393 1.7103 39 1 -2.2121 -4.7438 0.9756 40 1 -0.5537 -5.7455 -0.2996 41 1 1.3328 -5.4645 -1.7879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498576352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:21 Heat of formation + Delta-G solvation = -45.188094 kcal Electronic energy + Delta-G solvation = -22984.522690 eV Core-core repulsion = 19478.555404 eV Total energy + Delta-G solvation = -3505.967285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.11847 -40.51252 -38.96862 -37.49307 -36.42011 -34.35438 -33.49340 -32.99064 -31.32369 -28.01050 -27.85111 -27.02616 -25.57357 -24.38963 -23.68660 -22.56587 -20.76248 -19.18840 -18.83993 -18.40735 -17.96583 -17.34759 -16.85291 -16.56049 -16.45474 -16.05198 -15.92171 -15.42499 -15.28240 -15.17673 -14.87577 -14.57807 -14.24585 -13.96688 -13.59035 -13.45378 -13.37669 -13.20354 -13.11096 -12.81095 -12.77946 -12.57222 -12.42511 -12.05770 -11.87621 -11.82065 -11.20562 -10.99100 -10.62770 -10.42916 -9.71248 -9.06953 -9.04184 -7.98528 -5.29886 -0.06126 0.36427 1.43892 1.47439 1.51954 1.57536 1.63741 2.10267 2.53836 2.69281 3.34511 3.36937 3.50609 3.79281 3.83140 3.93603 3.94835 4.17941 4.23171 4.31013 4.47300 4.48649 4.56974 4.61691 4.65013 4.67693 4.73044 4.80914 4.85207 4.89955 4.95547 5.24315 5.24785 5.34266 5.44775 5.55531 5.74636 5.81652 6.22834 6.38870 7.05663 7.20122 7.27471 8.02042 8.26341 9.25973 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.002804 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.359037 B = 9981.976471 C =10398.386084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.612 5.612 3 C 0.129 3.871 4 C -0.124 4.124 5 C 0.157 3.843 6 N -0.752 5.752 7 C -0.249 4.249 8 H 0.081 0.919 9 C -0.083 4.083 10 N -0.975 5.975 11 Si 0.984 3.016 12 H -0.262 1.262 13 H -0.294 1.294 14 H -0.287 1.287 15 C 0.568 3.432 16 O -0.588 6.588 17 C -0.350 4.350 18 C 0.216 3.784 19 N -0.458 5.458 20 C 0.041 3.959 21 C 0.173 3.827 22 C -0.306 4.306 23 C 0.375 3.625 24 O -0.591 6.591 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.370 0.630 35 H 0.252 0.748 36 H 0.214 0.786 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.227 0.773 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.836 -21.680 22.429 39.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.344 5.344 3 C 0.006 3.994 4 C -0.163 4.163 5 C 0.030 3.970 6 N -0.394 5.394 7 C -0.381 4.381 8 H 0.098 0.902 9 C -0.274 4.274 10 N -0.625 5.625 11 Si 0.811 3.189 12 H -0.186 1.186 13 H -0.222 1.222 14 H -0.214 1.214 15 C 0.358 3.642 16 O -0.468 6.468 17 C -0.360 4.360 18 C 0.082 3.918 19 N -0.141 5.141 20 C -0.097 4.097 21 C 0.047 3.953 22 C -0.329 4.329 23 C 0.270 3.730 24 O -0.481 6.481 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.140 0.860 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.201 0.799 35 H 0.061 0.939 36 H 0.231 0.769 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.244 0.756 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.867 -21.502 22.331 39.123 hybrid contribution 1.328 0.634 -1.411 2.039 sum -22.538 -20.867 20.920 37.163 Atomic orbital electron populations 1.22360 0.76641 1.04487 1.04403 1.47905 1.08846 1.04682 1.72981 1.21322 0.98085 0.85039 0.94980 1.21898 0.99954 0.96030 0.98461 1.20701 0.96397 0.93844 0.86047 1.42669 1.68307 1.25503 1.02963 1.19759 1.27344 0.98611 0.92343 0.90155 1.25754 1.03268 1.03050 0.95365 1.69864 1.53332 1.40982 0.98359 0.84928 0.77333 0.78572 0.78026 1.18611 1.22166 1.21353 1.18248 0.86392 0.84387 0.75165 1.90763 1.16807 1.87959 1.51319 1.22027 1.04840 0.98754 1.10423 1.22649 0.87049 0.88331 0.93767 1.43379 1.27088 1.11909 1.31697 1.23058 0.84865 1.07192 0.94610 1.22439 0.93771 0.93365 0.85694 1.22308 1.01826 1.00535 1.08252 1.19157 0.84051 0.87895 0.81898 1.90789 1.30794 1.82559 1.43976 0.87814 0.90206 0.90212 0.86026 0.91816 0.96131 0.91295 0.93869 0.97060 0.79905 0.93905 0.76927 0.88270 0.86505 0.85912 0.75618 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 9.09 127.77 1.16 1.97 16 2 N -0.61 -16.48 2.87 -850.85 -2.44 -18.93 16 3 C 0.13 3.93 5.46 86.38 0.47 4.40 16 4 C -0.12 -4.98 5.65 30.59 0.17 -4.81 16 5 C 0.16 7.19 6.26 86.38 0.54 7.73 16 6 N -0.75 -43.62 5.60 -343.45 -1.92 -45.54 16 7 C -0.25 -15.24 9.99 84.03 0.84 -14.40 16 8 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 9 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 10 N -0.97 -64.70 13.06 21.65 0.28 -64.41 16 11 Si 0.98 49.17 29.55 68.60 2.03 51.19 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 15 C 0.57 20.15 7.08 86.62 0.61 20.76 16 16 O -0.59 -28.65 16.32 -2.23 -0.04 -28.68 16 17 C -0.35 -9.34 5.08 -18.63 -0.09 -9.43 16 18 C 0.22 2.04 7.87 84.25 0.66 2.70 16 19 N -0.46 -0.87 2.97 -547.47 -1.63 -2.50 16 20 C 0.04 -0.41 10.53 127.77 1.35 0.94 16 21 C 0.17 0.84 10.17 83.34 0.85 1.69 16 22 C -0.31 -5.87 10.01 22.34 0.22 -5.65 16 23 C 0.38 12.74 6.95 25.45 0.18 12.92 16 24 O -0.59 -29.14 17.30 -3.74 -0.06 -29.21 16 25 H 0.10 0.35 7.57 -2.39 -0.02 0.33 16 26 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.08 0.89 5.67 -2.38 -0.01 0.87 16 28 H 0.12 2.62 8.07 -2.39 -0.02 2.60 16 29 H 0.06 2.24 7.36 -2.39 -0.02 2.23 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.37 23.05 7.67 -92.71 -0.71 22.34 16 35 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 36 H 0.21 0.09 6.46 -2.91 -0.02 0.07 16 37 H 0.10 -1.12 8.14 -2.38 -0.02 -1.14 16 38 H 0.12 -1.55 7.96 -2.39 -0.02 -1.57 16 39 H 0.12 -1.74 7.96 -2.39 -0.02 -1.76 16 40 H 0.23 -1.58 7.98 -2.91 -0.02 -1.60 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -114.83 348.32 3.97 -110.86 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.33 Total: 13.07 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 7.43 Total: 14.15 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -5.71 Total: -131.38 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -0.10 Total: -57.89 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.19 kcal Total: -114.83 3.97 -110.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498576352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.669 kcal (2) G-P(sol) polarization free energy of solvation -114.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds