Wall clock time and date at job start Tue Mar 31 2020 03:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 O 1.21287 * 120.00120 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00240 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46724 * 35.00383 * 9 8 6 11 11 C 1.52999 * 109.47131 * 155.00464 * 9 8 6 12 12 N 1.46501 * 109.47155 * 305.00239 * 11 9 8 13 13 C 1.36933 * 120.00019 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00193 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00134 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99951 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00217 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47132 * 59.99857 * 17 15 13 19 19 H 1.48501 * 109.47464 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47523 * 300.00031 * 17 15 13 21 21 C 1.53003 * 109.47131 * 275.00827 * 9 8 6 22 22 C 1.52998 * 117.49899 * 128.74972 * 21 9 8 23 23 C 1.52998 * 117.50058 * 60.08488 * 21 9 8 24 24 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 25 25 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 26 26 H 0.96998 * 126.82131 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 28 28 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 29 29 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 30 30 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 31 31 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 32 32 H 0.97002 * 120.00111 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.46900 * 65.00283 * 11 9 8 34 34 H 1.09003 * 109.47134 * 185.00151 * 11 9 8 35 35 H 0.96999 * 119.99708 * 0.02562 * 12 11 9 36 36 H 0.97004 * 119.99697 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.54757 * 274.41450 * 21 9 8 38 38 H 1.08994 * 117.50027 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.50079 * 145.02108 * 22 21 9 40 40 H 1.09004 * 117.49652 * 214.98036 * 23 21 9 41 41 H 1.09002 * 117.49826 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 8 4.5144 1.4465 2.3416 8 7 6.1714 2.7573 1.6650 9 6 6.5548 3.0610 3.0460 10 1 6.3926 2.1819 3.6696 11 6 8.0332 3.4523 3.0906 12 7 8.8380 2.3908 2.4808 13 6 10.1992 2.5201 2.4075 14 1 10.6796 3.4047 2.7988 15 6 10.9618 1.5141 1.8303 16 7 10.3765 0.4357 1.3539 17 14 12.8187 1.6907 1.7296 18 1 13.3782 1.8242 3.0987 19 1 13.3955 0.4891 1.0748 20 1 13.1588 2.8988 0.9359 21 6 5.7042 4.2206 3.5682 22 6 4.9915 4.0266 4.9080 23 6 4.1874 4.0234 3.6054 24 7 3.6194 -0.6167 -0.0004 25 7 2.2964 -1.0881 -0.0005 26 1 2.0093 -2.0146 -0.0006 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3635 0.8897 0.5142 30 1 5.5739 1.1510 -0.5154 31 1 4.4697 2.5470 -0.5151 32 1 6.6655 3.1483 0.9274 33 1 8.1798 4.3814 2.5397 34 1 8.3410 3.5919 4.1269 35 1 8.4065 1.5965 2.1291 36 1 10.9095 -0.2675 0.9508 37 1 6.0764 5.2184 3.3360 38 1 5.1282 3.0727 5.4173 39 1 4.8944 4.8968 5.5571 40 1 3.5618 4.8916 3.3981 41 1 3.7955 3.0673 3.2583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498758449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:02 Heat of formation + Delta-G solvation = 82.724980 kcal Electronic energy + Delta-G solvation = -23356.873340 eV Core-core repulsion = 19888.745533 eV Total energy + Delta-G solvation = -3468.127807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16128 -39.66031 -37.12968 -34.95024 -33.64955 -33.32425 -32.40970 -31.19428 -29.91506 -28.12784 -27.35800 -23.99805 -22.24820 -21.90731 -21.44094 -21.06799 -20.01317 -19.83545 -17.93270 -17.32270 -16.75164 -16.04354 -15.49868 -15.37507 -14.94150 -14.51421 -14.37281 -13.75335 -13.68556 -13.50682 -13.11533 -13.02358 -12.92646 -12.79037 -12.14942 -11.96369 -11.84538 -11.59707 -11.09531 -10.98172 -10.87165 -10.77680 -10.18690 -10.16680 -10.05755 -10.02651 -9.88927 -9.66554 -9.61044 -9.30395 -8.88802 -8.55140 -6.94006 -5.75652 -3.05655 1.56535 2.57201 2.76687 2.97897 3.44428 3.48969 3.50115 3.53517 3.90855 4.23851 4.49720 4.57900 4.65879 4.95277 5.07795 5.09229 5.16698 5.24861 5.35903 5.44696 5.50861 5.53186 5.58130 5.63892 5.84403 5.91479 5.97413 6.15675 6.22810 6.28333 6.38902 6.42813 6.54318 6.61063 6.73067 6.98794 7.00712 7.69572 7.92457 8.08040 8.41976 8.60800 9.53703 10.09665 10.45285 11.46436 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003998 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.466664 B = 7002.198807 C = 8524.904963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.277 3.723 3 N -0.530 5.530 4 C 0.256 3.744 5 C -0.053 4.053 6 C 0.527 3.473 7 O -0.538 6.538 8 N -0.705 5.705 9 C 0.170 3.830 10 H 0.086 0.914 11 C 0.149 3.851 12 N -0.731 5.731 13 C -0.243 4.243 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.162 4.162 22 C -0.173 4.173 23 C -0.183 4.183 24 N -0.298 5.298 25 N -0.484 5.484 26 H 0.438 0.562 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.405 0.595 33 H 0.025 0.975 34 H 0.035 0.965 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.203 2.560 -3.172 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.001 4.001 3 N -0.260 5.260 4 C -0.027 4.027 5 C -0.095 4.095 6 C 0.312 3.688 7 O -0.416 6.416 8 N -0.356 5.356 9 C 0.065 3.935 10 H 0.105 0.895 11 C 0.020 3.980 12 N -0.376 5.376 13 C -0.374 4.374 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.182 4.182 22 C -0.211 4.211 23 C -0.220 4.220 24 N -0.126 5.126 25 N -0.202 5.202 26 H 0.283 0.717 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.240 0.760 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.866 2.244 -2.504 20.148 hybrid contribution 0.902 -0.661 -0.476 1.215 sum -18.964 1.583 -2.981 19.262 Atomic orbital electron populations 1.20356 0.83853 1.04943 1.04286 1.24320 0.96501 0.82953 0.96358 1.70280 1.01312 1.29481 1.24918 1.23277 0.92479 0.89725 0.97257 1.19930 0.93908 0.98752 0.96918 1.19999 0.80155 0.78435 0.90195 1.90628 1.53333 1.51749 1.45890 1.45854 1.32172 1.48277 1.09258 1.20783 0.94016 0.96259 0.82397 0.89550 1.20914 0.87103 0.92670 0.97265 1.42344 1.03718 1.20153 1.71428 1.19162 0.82980 1.02590 1.32686 0.91200 1.24748 0.97948 0.96682 1.01407 1.69663 1.34472 1.08626 1.45079 0.86268 0.85556 0.76731 0.77585 1.21314 1.21728 1.21266 1.22649 0.94406 0.99820 1.01320 1.22890 1.04870 1.02727 0.90568 1.23257 0.93197 1.04269 1.01243 1.78088 0.96270 1.12347 1.25939 1.47951 1.04392 1.09909 1.57953 0.71665 0.89168 0.90016 0.88421 0.86055 0.86228 0.75992 0.95692 0.94774 0.77968 0.93440 0.87893 0.88895 0.89291 0.89913 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.28 3.15 8.24 -155.70 -1.28 1.87 16 3 N -0.53 -7.83 11.19 -8.16 -0.09 -7.92 16 4 C 0.26 4.06 6.63 -156.85 -1.04 3.02 16 5 C -0.05 -0.74 6.33 -29.03 -0.18 -0.93 16 6 C 0.53 8.90 7.16 -10.99 -0.08 8.83 16 7 O -0.54 -10.77 13.06 5.55 0.07 -10.70 16 8 N -0.71 -11.41 4.50 -53.80 -0.24 -11.65 16 9 C 0.17 2.95 2.43 -67.93 -0.17 2.78 16 10 H 0.09 1.73 7.33 -51.93 -0.38 1.35 16 11 C 0.15 2.93 5.80 -4.04 -0.02 2.90 16 12 N -0.73 -18.18 5.43 -59.91 -0.33 -18.50 16 13 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 14 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 17 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.16 -2.39 5.36 -90.62 -0.49 -2.88 16 22 C -0.17 -2.41 10.18 -26.69 -0.27 -2.68 16 23 C -0.18 -2.68 9.74 -26.69 -0.26 -2.94 16 24 N -0.30 -4.82 12.80 32.42 0.41 -4.40 16 25 N -0.48 -5.66 7.45 32.62 0.24 -5.42 16 26 H 0.44 3.36 8.96 -182.33 -1.63 1.72 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.12 1.34 8.14 -51.94 -0.42 0.91 16 32 H 0.41 6.05 8.60 -40.82 -0.35 5.70 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 10.27 7.33 -40.82 -0.30 9.97 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 38 H 0.09 1.37 8.05 -51.93 -0.42 0.96 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.12 2.03 5.03 -51.93 -0.26 1.77 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -36.14 349.05 -9.74 -45.88 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -7.12 Total: 14.85 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.66 Total: 2.63 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: 0.72 Total: -75.22 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.14 -9.74 -45.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498758449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.609 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds