Wall clock time and date at job start Tue Mar 31 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 O 1.21287 * 120.00120 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00240 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46724 * 35.00383 * 9 8 6 11 11 C 1.52999 * 109.47131 * 155.00464 * 9 8 6 12 12 N 1.46501 * 109.47155 * 305.00239 * 11 9 8 13 13 C 1.36933 * 120.00019 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00193 * 359.97438 * 13 12 11 15 15 C 1.38807 * 120.00134 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99951 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00217 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47132 * 59.99857 * 17 15 13 19 19 H 1.48501 * 109.47464 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47523 * 300.00031 * 17 15 13 21 21 C 1.53003 * 109.47131 * 275.00827 * 9 8 6 22 22 C 1.52998 * 117.49899 * 128.74972 * 21 9 8 23 23 C 1.52998 * 117.50058 * 60.08488 * 21 9 8 24 24 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 25 25 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 26 26 H 0.96998 * 126.82131 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 28 28 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 29 29 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 30 30 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 31 31 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 32 32 H 0.97002 * 120.00111 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.46900 * 65.00283 * 11 9 8 34 34 H 1.09003 * 109.47134 * 185.00151 * 11 9 8 35 35 H 0.96999 * 119.99708 * 0.02562 * 12 11 9 36 36 H 0.97004 * 119.99697 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.54757 * 274.41450 * 21 9 8 38 38 H 1.08994 * 117.50027 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.50079 * 145.02108 * 22 21 9 40 40 H 1.09004 * 117.49652 * 214.98036 * 23 21 9 41 41 H 1.09002 * 117.49826 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 8 4.5144 1.4465 2.3416 8 7 6.1714 2.7573 1.6650 9 6 6.5548 3.0610 3.0460 10 1 6.3926 2.1819 3.6696 11 6 8.0332 3.4523 3.0906 12 7 8.8380 2.3908 2.4808 13 6 10.1992 2.5201 2.4075 14 1 10.6796 3.4047 2.7988 15 6 10.9618 1.5141 1.8303 16 7 10.3765 0.4357 1.3539 17 14 12.8187 1.6907 1.7296 18 1 13.3782 1.8242 3.0987 19 1 13.3955 0.4891 1.0748 20 1 13.1588 2.8988 0.9359 21 6 5.7042 4.2206 3.5682 22 6 4.9915 4.0266 4.9080 23 6 4.1874 4.0234 3.6054 24 7 3.6194 -0.6167 -0.0004 25 7 2.2964 -1.0881 -0.0005 26 1 2.0093 -2.0146 -0.0006 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3635 0.8897 0.5142 30 1 5.5739 1.1510 -0.5154 31 1 4.4697 2.5470 -0.5151 32 1 6.6655 3.1483 0.9274 33 1 8.1798 4.3814 2.5397 34 1 8.3410 3.5919 4.1269 35 1 8.4065 1.5965 2.1291 36 1 10.9095 -0.2675 0.9508 37 1 6.0764 5.2184 3.3360 38 1 5.1282 3.0727 5.4173 39 1 4.8944 4.8968 5.5571 40 1 3.5618 4.8916 3.3981 41 1 3.7955 3.0673 3.2583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498758449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:00 Heat of formation + Delta-G solvation = 56.219908 kcal Electronic energy + Delta-G solvation = -23358.022686 eV Core-core repulsion = 19888.745533 eV Total energy + Delta-G solvation = -3469.277153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.16190 -41.00934 -38.44949 -36.59958 -34.96581 -34.64161 -33.34735 -33.02270 -31.10658 -29.42833 -28.49374 -25.89757 -23.54663 -23.07036 -22.90043 -22.08802 -21.29715 -21.06842 -19.24560 -18.88252 -18.16251 -17.34821 -16.73794 -16.69255 -16.42908 -15.90148 -15.56376 -15.18012 -15.08302 -14.78550 -14.52555 -14.39132 -13.78579 -13.60461 -13.57192 -13.16508 -13.13041 -12.75593 -12.72126 -12.69254 -12.45172 -12.23948 -12.10416 -11.83145 -11.30396 -11.18572 -11.09795 -11.06570 -10.95483 -10.77976 -10.44042 -9.92268 -8.99767 -7.92081 -5.22052 0.58554 1.49498 1.52256 1.58314 1.64042 1.67085 1.76069 2.32025 2.57760 2.98323 3.08423 3.41880 3.54997 3.60820 3.82477 3.95375 4.02224 4.14283 4.19133 4.37694 4.40266 4.42575 4.48756 4.65839 4.71956 4.75989 4.83127 4.92788 5.05240 5.06691 5.13997 5.26481 5.30264 5.34793 5.40391 5.51922 5.61128 6.22626 6.27824 6.61316 7.07469 7.29550 7.35372 8.08569 8.32778 9.30560 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003998 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.466664 B = 7002.198807 C = 8524.904963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.562 5.562 4 C 0.241 3.759 5 C -0.048 4.048 6 C 0.525 3.475 7 O -0.573 6.573 8 N -0.700 5.700 9 C 0.180 3.820 10 H 0.053 0.947 11 C 0.151 3.849 12 N -0.743 5.743 13 C -0.245 4.245 14 H 0.080 0.920 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.974 3.026 18 H -0.281 1.281 19 H -0.299 1.299 20 H -0.274 1.274 21 C -0.161 4.161 22 C -0.167 4.167 23 C -0.180 4.180 24 N -0.344 5.344 25 N -0.476 5.476 26 H 0.454 0.546 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.412 0.588 33 H 0.045 0.955 34 H 0.035 0.965 35 H 0.374 0.626 36 H 0.250 0.750 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 4.164 -3.301 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.007 3.993 3 N -0.292 5.292 4 C -0.042 4.042 5 C -0.090 4.090 6 C 0.312 3.688 7 O -0.453 6.453 8 N -0.351 5.351 9 C 0.075 3.925 10 H 0.071 0.929 11 C 0.025 3.975 12 N -0.386 5.386 13 C -0.376 4.376 14 H 0.097 0.903 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.803 3.197 18 H -0.207 1.207 19 H -0.225 1.225 20 H -0.200 1.200 21 C -0.181 4.181 22 C -0.204 4.204 23 C -0.217 4.217 24 N -0.174 5.174 25 N -0.197 5.197 26 H 0.302 0.698 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.248 0.752 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.206 0.794 36 H 0.058 0.942 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.862 3.878 -2.624 21.381 hybrid contribution 1.089 -1.174 -0.387 1.648 sum -19.773 2.704 -3.012 20.183 Atomic orbital electron populations 1.20644 0.79783 1.06392 1.06255 1.25329 0.98386 0.81954 0.93680 1.70278 1.01182 1.31133 1.26600 1.23518 0.93372 0.89874 0.97459 1.19970 0.93915 1.00011 0.95127 1.20442 0.79670 0.77721 0.91012 1.90611 1.54498 1.52963 1.47211 1.45796 1.32033 1.48187 1.09052 1.20528 0.93209 0.96059 0.82693 0.92904 1.21034 0.87769 0.91845 0.96899 1.42517 1.03472 1.20934 1.71691 1.19595 0.84304 1.02480 1.31242 0.90253 1.25559 1.02337 0.96671 1.02035 1.69835 1.35799 1.09499 1.46703 0.85212 0.80312 0.76570 0.77623 1.20736 1.22545 1.19977 1.22573 0.94097 0.99399 1.02025 1.22972 1.03806 1.03145 0.90498 1.23155 0.93126 1.03726 1.01659 1.77958 0.98987 1.12916 1.27527 1.47866 1.03173 1.11039 1.57575 0.69785 0.86728 0.87198 0.88261 0.85652 0.83332 0.75173 0.93753 0.94721 0.79402 0.94164 0.85720 0.90463 0.86487 0.87735 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.51 71.23 0.75 0.10 16 2 C 0.28 6.17 8.24 138.22 1.14 7.31 16 3 N -0.56 -16.44 11.19 -179.73 -2.01 -18.45 16 4 C 0.24 7.77 6.63 138.63 0.92 8.69 16 5 C -0.05 -1.38 6.33 29.10 0.18 -1.20 16 6 C 0.53 18.16 7.16 87.66 0.63 18.79 16 7 O -0.57 -23.81 13.06 -3.05 -0.04 -23.85 16 8 N -0.70 -22.80 4.50 -442.52 -1.99 -24.79 16 9 C 0.18 6.25 2.43 44.99 0.11 6.36 16 10 H 0.05 2.20 7.33 -2.39 -0.02 2.18 16 11 C 0.15 5.85 5.80 86.38 0.50 6.35 16 12 N -0.74 -37.09 5.43 -343.45 -1.87 -38.96 16 13 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 14 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 15 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 16 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 17 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C -0.16 -4.52 5.36 -10.79 -0.06 -4.58 16 22 C -0.17 -4.41 10.18 30.62 0.31 -4.10 16 23 C -0.18 -5.04 9.74 30.62 0.30 -4.75 16 24 N -0.34 -11.39 12.80 -51.33 -0.66 -12.05 16 25 N -0.48 -10.97 7.45 -50.71 -0.38 -11.35 16 26 H 0.45 6.62 8.96 -213.10 -1.91 4.71 16 27 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.41 12.19 8.60 -92.71 -0.80 11.39 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.37 20.36 7.33 -92.71 -0.68 19.68 16 36 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.12 3.00 8.11 -2.39 -0.02 2.98 16 38 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 39 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.09 3.11 5.03 -2.39 -0.01 3.10 16 Total: -1.00 -79.61 349.05 -0.85 -80.46 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -2.30 Total: 43.53 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.09 Total: 16.68 kcal Atomic # 7 Polarization: -158.13 SS G_CDS: -6.62 Total: -164.75 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.61 -0.85 -80.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498758449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.677 kcal (2) G-P(sol) polarization free energy of solvation -79.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds