Wall clock time and date at job start Tue Mar 31 2020 03:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30829 * 125.95896 * 2 1 4 4 C 1.33237 * 109.82933 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.53028 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47148 * 90.00016 * 5 4 3 7 7 O 1.21283 * 119.99803 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.28037 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 H 1.09001 * 109.47884 * 324.99780 * 9 8 6 11 11 C 1.53001 * 109.47201 * 204.99403 * 9 8 6 12 12 N 1.46507 * 109.46637 * 55.00007 * 11 9 8 13 13 C 1.36938 * 119.99616 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00430 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99364 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00771 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99685 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47251 * 89.99878 * 17 15 13 19 19 H 1.48501 * 109.47077 * 210.00202 * 17 15 13 20 20 H 1.48503 * 109.46932 * 329.99504 * 17 15 13 21 21 C 1.53008 * 109.47335 * 84.99977 * 9 8 6 22 22 C 1.52999 * 117.49654 * 8.74276 * 21 9 8 23 23 C 1.53004 * 117.49525 * 300.08689 * 21 9 8 24 24 N 1.30717 * 108.94756 * 0.26847 * 4 3 2 25 25 N 1.34424 * 125.96061 * 180.02562 * 2 1 3 26 26 H 0.97003 * 126.82602 * 359.96991 * 25 2 1 27 27 H 1.08994 * 109.47136 * 89.97235 * 1 2 3 28 28 H 1.08998 * 109.46903 * 209.97013 * 1 2 3 29 29 H 1.08999 * 109.47410 * 329.96892 * 1 2 3 30 30 H 1.09009 * 109.46601 * 330.00037 * 5 4 3 31 31 H 1.08998 * 109.47035 * 210.00545 * 5 4 3 32 32 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 33 33 H 1.08995 * 109.47553 * 174.99994 * 11 9 8 34 34 H 1.08998 * 109.47075 * 295.00439 * 11 9 8 35 35 H 0.97000 * 120.00165 * 0.02562 * 12 11 9 36 36 H 0.97000 * 120.00697 * 180.02562 * 16 15 13 37 37 H 1.08997 * 115.55211 * 154.41322 * 21 9 8 38 38 H 1.09002 * 117.49793 * 359.97438 * 22 21 9 39 39 H 1.08997 * 117.49566 * 145.02346 * 22 21 9 40 40 H 1.09000 * 117.49631 * 214.97968 * 23 21 9 41 41 H 1.09000 * 117.49764 * 359.97318 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 6 5.1316 1.9343 1.4207 7 8 4.5139 1.4444 2.3424 8 7 6.1674 2.7606 1.6673 9 6 6.5470 3.0673 3.0486 10 1 5.6526 3.1102 3.6703 11 6 7.2639 4.4182 3.0926 12 7 6.4143 5.4420 2.4791 13 6 6.8500 6.7381 2.4036 14 1 7.8197 7.0056 2.7967 15 6 6.0448 7.7082 1.8228 16 7 4.8624 7.3826 1.3451 17 14 6.6394 9.4761 1.7192 18 1 7.3744 9.6772 0.4447 19 1 5.4733 10.3942 1.7684 20 1 7.5431 9.7621 2.8623 21 6 7.4820 1.9765 3.5748 22 6 7.9977 0.9434 2.5710 23 6 6.9467 0.5435 3.6095 24 7 3.6195 -0.6168 -0.0067 25 7 2.2964 -1.0881 -0.0005 26 1 2.0094 -2.0146 -0.0005 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 4.4699 2.5475 -0.5134 31 1 5.5741 1.1514 -0.5146 32 1 6.6616 3.1521 0.9301 33 1 7.4674 4.6881 4.1288 34 1 8.2032 4.3491 2.5439 35 1 5.5432 5.2019 2.1264 36 1 4.2998 8.0604 0.9389 37 1 8.1566 2.2812 4.3749 38 1 7.6706 1.0407 1.5358 39 1 9.0115 0.5683 2.7109 40 1 7.2695 -0.0945 4.4322 41 1 5.9283 0.3781 3.2578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498758451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:04 Heat of formation + Delta-G solvation = 61.513092 kcal Electronic energy + Delta-G solvation = -23498.845496 eV Core-core repulsion = 20029.797872 eV Total energy + Delta-G solvation = -3469.047624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.17520 -41.18956 -38.41265 -36.52260 -34.82563 -34.62351 -33.35605 -33.05453 -31.11687 -29.52152 -28.50652 -25.92231 -23.51245 -23.27045 -22.86721 -22.14454 -21.13667 -20.88602 -19.25964 -18.86841 -18.17878 -17.32257 -17.15880 -16.63633 -16.39926 -15.73342 -15.49332 -15.16494 -15.12920 -14.83143 -14.50299 -14.40132 -13.70441 -13.62676 -13.60410 -13.16025 -13.04858 -12.83266 -12.74634 -12.69820 -12.63015 -12.24542 -12.06284 -11.80626 -11.33887 -11.19002 -11.07713 -10.95923 -10.87341 -10.75849 -10.43334 -9.94123 -8.97761 -7.90330 -5.20261 0.55287 1.51023 1.52372 1.60350 1.61082 1.67677 1.75126 2.36177 2.58890 2.95949 3.04046 3.43835 3.52451 3.63244 3.83223 3.92375 4.03814 4.12121 4.20831 4.35142 4.42008 4.45335 4.53175 4.66292 4.69702 4.75621 4.84519 4.91923 5.04347 5.06581 5.17629 5.24095 5.28246 5.33851 5.39572 5.53830 5.60986 6.22251 6.29838 6.58719 7.08847 7.27417 7.37416 8.10614 8.34811 9.32580 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.004240 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.474000 B = 6601.516073 C = 8233.487228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.575 5.575 4 C 0.240 3.760 5 C -0.049 4.049 6 C 0.525 3.475 7 O -0.570 6.570 8 N -0.700 5.700 9 C 0.180 3.820 10 H 0.056 0.944 11 C 0.152 3.848 12 N -0.743 5.743 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.072 4.072 16 N -0.967 5.967 17 Si 0.972 3.028 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.270 1.270 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.193 4.193 24 N -0.330 5.330 25 N -0.473 5.473 26 H 0.455 0.545 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.413 0.587 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.374 0.626 36 H 0.250 0.750 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -19.497 -3.981 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.305 5.305 4 C -0.043 4.043 5 C -0.091 4.091 6 C 0.311 3.689 7 O -0.449 6.449 8 N -0.352 5.352 9 C 0.075 3.925 10 H 0.075 0.925 11 C 0.025 3.975 12 N -0.386 5.386 13 C -0.376 4.376 14 H 0.097 0.903 15 C -0.264 4.264 16 N -0.618 5.618 17 Si 0.801 3.199 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.195 1.195 21 C -0.185 4.185 22 C -0.194 4.194 23 C -0.230 4.230 24 N -0.159 5.159 25 N -0.193 5.193 26 H 0.304 0.696 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.147 0.853 31 H 0.163 0.837 32 H 0.249 0.751 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.000 -19.732 -3.291 20.104 hybrid contribution -0.403 0.699 -0.332 0.872 sum -2.403 -19.033 -3.623 19.523 Atomic orbital electron populations 1.20637 0.80156 1.06265 1.06205 1.25222 0.98309 0.81991 0.93833 1.70334 1.02041 1.31683 1.26436 1.23489 0.93113 0.90075 0.97645 1.19983 0.94466 0.99570 0.95121 1.20452 0.79318 0.78134 0.91013 1.90621 1.53716 1.53336 1.47257 1.45807 1.32895 1.47363 1.09108 1.20455 0.96417 0.93111 0.82507 0.92548 1.21017 0.93601 0.86008 0.96876 1.42525 1.19584 1.04972 1.71527 1.19624 1.00769 0.86093 1.31114 0.90314 1.25534 0.96819 1.02050 1.02020 1.69832 1.11461 1.33926 1.46576 0.85163 0.76620 0.80066 0.78006 1.21169 1.22677 1.19544 1.22620 1.02488 0.89987 1.03363 1.22971 0.99061 1.01700 0.95680 1.23229 0.99910 0.97280 1.02585 1.77822 0.98661 1.11978 1.27474 1.47833 1.03219 1.10845 1.57437 0.69571 0.86765 0.86769 0.88974 0.85281 0.83686 0.75092 0.94688 0.93861 0.79332 0.94115 0.85755 0.89013 0.87114 0.88302 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.51 71.24 0.75 -0.11 16 2 C 0.28 6.60 8.24 138.23 1.14 7.74 16 3 N -0.57 -18.71 11.19 -179.72 -2.01 -20.72 16 4 C 0.24 7.69 6.63 138.63 0.92 8.61 16 5 C -0.05 -1.40 6.33 29.10 0.18 -1.22 16 6 C 0.52 17.89 6.66 87.66 0.58 18.48 16 7 O -0.57 -23.57 13.06 -3.04 -0.04 -23.61 16 8 N -0.70 -22.41 3.05 -442.52 -1.35 -23.76 16 9 C 0.18 6.21 2.59 45.00 0.12 6.33 16 10 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 11 C 0.15 5.83 5.80 86.38 0.50 6.33 16 12 N -0.74 -36.88 5.43 -343.44 -1.87 -38.75 16 13 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 14 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 17 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.16 -4.62 5.71 -10.79 -0.06 -4.69 16 22 C -0.16 -3.82 9.74 30.62 0.30 -3.52 16 23 C -0.19 -5.49 9.82 30.62 0.30 -5.19 16 24 N -0.33 -9.74 12.80 -51.33 -0.66 -10.40 16 25 N -0.47 -10.18 7.45 -50.71 -0.38 -10.56 16 26 H 0.46 5.63 8.96 -213.09 -1.91 3.72 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.13 3.54 8.14 -2.38 -0.02 3.52 16 31 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.41 12.06 8.60 -92.71 -0.80 11.26 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.37 20.27 7.33 -92.71 -0.68 19.59 16 36 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.12 3.09 8.11 -2.39 -0.02 3.08 16 38 H 0.09 2.24 6.67 -2.39 -0.02 2.22 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.09 3.09 5.01 -2.39 -0.01 3.08 16 Total: -1.00 -79.26 346.13 -0.26 -79.52 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -2.30 Total: 42.77 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.04 Total: 16.65 kcal Atomic # 7 Polarization: -157.12 SS G_CDS: -5.98 Total: -163.10 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -79.26 -0.26 -79.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498758451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.029 kcal (2) G-P(sol) polarization free energy of solvation -79.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds