Wall clock time and date at job start Tue Mar 31 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99995 * 3 2 1 5 5 H 1.48496 * 109.46771 * 30.00387 * 3 2 1 6 6 H 1.48500 * 109.46838 * 149.99763 * 3 2 1 7 7 C 1.38813 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99774 * 359.71908 * 7 2 1 9 9 N 1.36938 * 120.00038 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99737 * 174.45800 * 9 7 2 11 11 C 1.53004 * 115.55024 * 65.27445 * 10 9 7 12 12 N 1.46500 * 109.46948 * 80.38544 * 11 10 9 13 13 C 1.34773 * 120.00008 * 174.94227 * 12 11 10 14 14 O 1.21285 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00207 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.47155 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47281 * 179.97438 * 16 15 13 18 18 N 1.46494 * 109.47090 * 179.97438 * 17 16 15 19 19 C 1.34438 * 126.82142 * 125.00553 * 18 17 16 20 20 N 1.30831 * 108.07647 * 179.97438 * 19 18 17 21 21 C 1.33242 * 109.83189 * 359.97438 * 20 19 18 22 22 N 1.30717 * 108.94323 * 359.75641 * 21 20 19 23 23 C 1.52995 * 117.50027 * 279.60168 * 10 9 7 24 24 C 1.53002 * 117.49538 * 210.94152 * 10 9 7 25 25 H 0.97005 * 119.99848 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99766 * 354.45404 * 9 7 2 27 27 H 1.08994 * 109.47169 * 200.38629 * 11 10 9 28 28 H 1.08999 * 109.47048 * 320.39246 * 11 10 9 29 29 H 0.97001 * 120.00206 * 354.95307 * 12 11 10 30 30 H 1.09002 * 109.47042 * 300.00222 * 15 13 12 31 31 H 1.09002 * 109.47279 * 60.00557 * 15 13 12 32 32 H 1.09001 * 109.47396 * 300.00256 * 16 15 13 33 33 H 1.08998 * 109.47293 * 59.99673 * 16 15 13 34 34 H 1.08993 * 109.47424 * 299.99938 * 17 16 15 35 35 H 1.09001 * 109.46474 * 60.00291 * 17 16 15 36 36 H 1.07992 * 125.95925 * 359.97438 * 19 18 17 37 37 H 1.07998 * 125.52700 * 179.97438 * 21 20 19 38 38 H 1.09007 * 117.49708 * 0.02562 * 23 10 9 39 39 H 1.08996 * 117.50212 * 145.01890 * 23 10 9 40 40 H 1.08996 * 117.49829 * 214.97758 * 24 10 9 41 41 H 1.08994 * 117.49914 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 0.0036 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4651 0.1220 11 6 3.9423 -3.4416 -1.0437 12 7 4.8197 -3.0422 -2.1469 13 6 4.9155 -3.8164 -3.2459 14 8 4.2750 -4.8436 -3.3217 15 6 5.8183 -3.4059 -4.3804 16 6 5.7428 -4.4504 -5.4959 17 6 6.6590 -4.0334 -6.6481 18 7 6.5871 -5.0338 -7.7158 19 6 6.2838 -4.8139 -9.0069 20 7 6.3265 -5.9608 -9.6350 21 6 6.6527 -6.9313 -8.7823 22 7 6.8279 -6.4122 -7.5955 23 6 4.2686 -3.0584 1.5235 24 6 5.4730 -2.4278 0.8200 25 1 -0.4850 0.8401 -0.0004 26 1 3.8645 -0.3660 -0.0804 27 1 4.2052 -4.4474 -0.7163 28 1 2.9059 -3.4284 -1.3808 29 1 5.3317 -2.2206 -2.0863 30 1 5.4989 -2.4382 -4.7671 31 1 6.8444 -3.3324 -4.0200 32 1 6.0620 -5.4184 -5.1095 33 1 4.7167 -4.5236 -5.8563 34 1 6.3394 -3.0656 -7.0344 35 1 7.6851 -3.9600 -6.2879 36 1 6.0462 -3.8574 -9.4485 37 1 6.7589 -7.9766 -9.0320 38 1 3.8263 -2.5093 2.3548 39 1 4.2511 -4.1444 1.6151 40 1 6.2474 -3.0992 0.4491 41 1 5.8236 -1.4636 1.1880 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499410277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:47 Heat of formation + Delta-G solvation = 63.667327 kcal Electronic energy + Delta-G solvation = -22426.300625 eV Core-core repulsion = 18957.346416 eV Total energy + Delta-G solvation = -3468.954209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.94409 -40.83251 -39.13618 -36.49872 -35.33436 -34.81573 -33.14171 -32.37221 -32.14189 -29.15568 -27.13622 -25.65397 -24.03970 -23.24591 -22.87885 -22.06405 -21.26113 -20.60298 -19.73335 -18.56191 -17.69841 -17.29144 -17.12560 -16.50240 -16.40069 -16.18911 -15.85273 -15.37216 -15.31497 -14.88239 -14.74336 -14.50301 -14.15136 -13.84110 -13.64234 -13.23915 -13.08040 -12.87228 -12.76207 -12.56626 -12.36102 -12.27633 -11.82478 -11.82058 -11.67768 -11.12058 -11.00575 -10.98534 -10.78489 -10.66091 -10.55536 -10.02060 -9.34053 -8.02305 -5.38929 0.73062 1.37709 1.42846 1.46992 1.50392 1.70739 2.03171 2.23658 2.48457 2.99852 3.26615 3.41037 3.53202 3.55749 3.74387 3.79396 3.90032 4.13936 4.15069 4.15409 4.24629 4.35133 4.49599 4.55155 4.67163 4.77121 4.80842 4.84076 5.01057 5.03084 5.15045 5.23430 5.32826 5.35250 5.49405 5.50789 5.78776 5.97668 6.20732 6.65791 7.06791 7.14569 7.34082 7.79826 8.00546 9.19289 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.002738 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.081600 B =10224.313540 C =10865.482153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.302 1.302 6 H -0.245 1.245 7 C -0.224 4.224 8 H 0.047 0.953 9 N -0.713 5.713 10 C 0.101 3.899 11 C 0.160 3.840 12 N -0.705 5.705 13 C 0.499 3.501 14 O -0.601 6.601 15 C -0.123 4.123 16 C -0.108 4.108 17 C 0.129 3.871 18 N -0.383 5.383 19 C 0.258 3.742 20 N -0.584 5.584 21 C 0.187 3.813 22 N -0.356 5.356 23 C -0.192 4.192 24 C -0.141 4.141 25 H 0.257 0.743 26 H 0.372 0.628 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.414 0.586 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.147 0.853 35 H 0.110 0.890 36 H 0.262 0.738 37 H 0.235 0.765 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.760 -3.355 -12.882 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.169 1.169 7 C -0.355 4.355 8 H 0.065 0.935 9 N -0.355 5.355 10 C 0.010 3.990 11 C 0.033 3.967 12 N -0.356 5.356 13 C 0.288 3.712 14 O -0.482 6.482 15 C -0.163 4.163 16 C -0.147 4.147 17 C 0.008 3.992 18 N -0.173 5.173 19 C -0.038 4.038 20 N -0.312 5.312 21 C -0.116 4.116 22 N -0.184 5.184 23 C -0.232 4.232 24 C -0.178 4.178 25 H 0.066 0.934 26 H 0.207 0.793 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.251 0.749 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.278 0.722 37 H 0.251 0.749 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.236 -4.522 -12.547 25.077 hybrid contribution -0.630 1.211 0.361 1.412 sum 20.606 -3.311 -12.186 24.167 Atomic orbital electron populations 1.69911 1.07493 1.26742 1.59519 1.25590 0.96098 1.01597 1.02491 0.85330 0.78714 0.78961 0.78224 1.20009 1.22968 1.16883 1.18824 0.82398 0.93011 1.41259 0.93475 1.41925 1.01931 1.03048 1.88642 1.20244 0.97815 0.89036 0.91932 1.20838 0.93066 0.96411 0.86373 1.45844 1.46006 1.26541 1.17216 1.21530 0.82593 0.82955 0.84145 1.90704 1.48431 1.27659 1.81428 1.21591 1.01411 1.01264 0.92070 1.21418 0.99454 0.99089 0.94718 1.22176 1.02551 0.89201 0.85255 1.50758 1.50564 1.06058 1.09955 1.26960 0.94447 1.00690 0.81662 1.70536 1.25924 0.99303 1.35418 1.26504 0.97293 1.01775 0.86033 1.77998 1.26355 0.89907 1.24141 1.23389 1.03017 1.00467 0.96333 1.23233 0.89878 1.03223 1.01472 0.93393 0.79340 0.91485 0.95321 0.74902 0.85339 0.84754 0.92883 0.93406 0.83565 0.87181 0.72214 0.74884 0.90123 0.88106 0.85980 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.69 13.97 21.65 0.30 -62.39 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.96 42.88 27.68 68.60 1.90 44.78 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.24 -9.50 6.60 99.48 0.66 -8.84 16 7 C -0.22 -12.30 10.05 84.03 0.84 -11.46 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 9 N -0.71 -30.23 5.29 -303.34 -1.60 -31.84 16 10 C 0.10 3.43 2.15 3.60 0.01 3.44 16 11 C 0.16 5.50 5.73 86.38 0.49 6.00 16 12 N -0.71 -18.58 5.51 -463.06 -2.55 -21.14 16 13 C 0.50 13.45 7.83 87.66 0.69 14.13 16 14 O -0.60 -22.94 15.98 -3.04 -0.05 -22.99 16 15 C -0.12 -1.68 5.70 29.85 0.17 -1.51 16 16 C -0.11 -1.86 4.72 30.59 0.14 -1.72 16 17 C 0.13 1.19 6.55 86.38 0.57 1.75 16 18 N -0.38 -6.32 3.69 -352.08 -1.30 -7.62 16 19 C 0.26 3.66 12.63 180.36 2.28 5.93 16 20 N -0.58 -11.92 11.19 -204.00 -2.28 -14.20 16 21 C 0.19 3.81 13.03 180.76 2.36 6.17 16 22 N -0.36 -8.17 12.58 -61.24 -0.77 -8.94 16 23 C -0.19 -5.91 10.11 30.62 0.31 -5.60 16 24 C -0.14 -3.38 10.14 30.62 0.31 -3.07 16 25 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 26 H 0.37 14.58 5.96 -92.71 -0.55 14.02 16 27 H 0.07 2.24 7.94 -2.39 -0.02 2.22 16 28 H 0.03 1.27 7.72 -2.39 -0.02 1.25 16 29 H 0.41 8.29 8.48 -92.71 -0.79 7.50 16 30 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.15 0.13 8.09 -2.39 -0.02 0.11 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.26 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.24 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 39 H 0.10 2.79 8.08 -2.39 -0.02 2.77 16 40 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -87.02 354.56 1.94 -85.08 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.34 Total: 28.53 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 8.63 Total: 10.72 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -8.21 Total: -146.12 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.90 Total: 44.78 kcal Total: -87.02 1.94 -85.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499410277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.748 kcal (2) G-P(sol) polarization free energy of solvation -87.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds