Wall clock time and date at job start Tue Mar 31 2020 03:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48506 * 109.47348 * 240.00207 * 3 2 1 5 5 H 1.48498 * 109.47512 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47373 * 120.00473 * 3 2 1 7 7 C 1.38803 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99998 * 197.36235 * 7 2 1 9 9 N 1.36939 * 120.00513 * 17.35333 * 7 2 1 10 10 C 1.46929 * 120.62427 * 27.68909 * 9 7 2 11 11 C 1.53190 * 108.77277 * 126.37296 * 10 9 7 12 12 C 1.53045 * 109.34313 * 54.61547 * 11 10 9 13 13 C 1.53041 * 109.53914 * 298.68691 * 12 11 10 14 14 H 1.08996 * 109.46886 * 301.35942 * 13 12 11 15 15 N 1.46494 * 109.52377 * 181.29336 * 13 12 11 16 16 C 1.34775 * 120.00225 * 155.11169 * 15 13 12 17 17 O 1.21282 * 119.99687 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00293 * 180.02562 * 16 15 13 19 19 C 1.53002 * 109.47127 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47161 * 179.97438 * 19 18 16 21 21 N 1.33246 * 125.52628 * 90.00014 * 20 19 18 22 22 C 1.30827 * 109.83310 * 180.02562 * 21 20 19 23 23 N 1.34438 * 108.07295 * 0.02562 * 22 21 20 24 24 H 0.97001 * 126.81788 * 180.02562 * 23 22 21 25 25 N 1.30705 * 125.52939 * 269.69815 * 20 19 18 26 26 C 1.46929 * 120.63411 * 207.67123 * 9 7 2 27 27 H 0.97006 * 120.00073 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58568 * 6.58882 * 10 9 7 29 29 H 1.08996 * 109.58603 * 246.15791 * 10 9 7 30 30 H 1.09001 * 109.50303 * 174.58569 * 11 10 9 31 31 H 1.09002 * 109.50175 * 294.65100 * 11 10 9 32 32 H 1.09006 * 109.45281 * 58.66948 * 12 11 10 33 33 H 1.08997 * 109.46419 * 178.62994 * 12 11 10 34 34 H 0.97001 * 120.00181 * 335.11611 * 15 13 12 35 35 H 1.08998 * 109.46677 * 299.99927 * 18 16 15 36 36 H 1.08998 * 109.46589 * 60.00138 * 18 16 15 37 37 H 1.08997 * 109.47152 * 300.00079 * 19 18 16 38 38 H 1.08997 * 109.46761 * 59.99771 * 19 18 16 39 39 H 1.07997 * 125.96552 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.58271 * 353.41731 * 26 9 7 41 41 H 1.09001 * 109.58148 * 113.84129 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3548 10 6 0.2280 -2.3339 -1.2758 11 6 0.5014 -3.3029 -2.4304 12 6 0.8202 -4.6887 -1.8644 13 6 2.0753 -4.6090 -0.9922 14 1 2.9090 -4.2382 -1.5884 15 7 2.3979 -5.9414 -0.4757 16 6 3.6645 -6.2397 -0.1249 17 8 4.5372 -5.4048 -0.2365 18 6 3.9965 -7.6105 0.4060 19 6 5.4908 -7.6852 0.7264 20 6 5.8226 -9.0557 1.2578 21 7 6.1924 -10.1030 0.5216 22 6 6.4042 -11.1366 1.2951 23 7 6.1688 -10.7627 2.5648 24 1 6.2440 -11.3168 3.3574 25 7 5.7998 -9.4084 2.5162 26 6 1.8197 -3.6548 0.1787 27 1 -0.4850 0.8401 0.0004 28 1 0.0985 -1.3253 -1.6682 29 1 -0.6741 -2.6411 -0.7468 30 1 -0.3792 -3.3649 -3.0698 31 1 1.3497 -2.9442 -3.0134 32 1 -0.0188 -5.0365 -1.2617 33 1 0.9913 -5.3856 -2.6849 34 1 1.6999 -6.6089 -0.3861 35 1 3.4211 -7.7981 1.3125 36 1 3.7474 -8.3607 -0.3444 37 1 6.0665 -7.4973 -0.1799 38 1 5.7393 -6.9348 1.4768 39 1 6.7141 -12.1189 0.9703 40 1 2.7402 -3.5176 0.7460 41 1 1.0472 -4.0697 0.8263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567772434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:00 Heat of formation + Delta-G solvation = 35.161841 kcal Electronic energy + Delta-G solvation = -23001.352933 eV Core-core repulsion = 19531.162634 eV Total energy + Delta-G solvation = -3470.190300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05594 -40.94582 -38.99508 -35.94786 -35.22674 -34.11439 -32.96768 -32.33098 -31.71313 -30.16705 -27.25789 -26.38184 -23.88027 -23.72580 -23.36735 -21.45630 -21.15925 -20.74759 -19.22914 -18.71200 -18.02143 -17.18476 -16.74281 -16.67973 -16.28880 -16.00778 -15.70034 -15.31416 -15.12222 -14.86416 -14.35588 -14.10897 -13.92253 -13.90082 -13.35217 -13.23128 -13.08122 -13.01419 -12.72514 -12.55461 -12.16815 -12.11916 -11.96360 -11.73934 -11.55583 -11.29030 -11.10032 -11.04066 -10.87958 -10.61921 -10.59547 -10.06072 -8.69084 -7.90552 -5.35792 0.66806 1.44281 1.46575 1.54147 1.70665 1.80481 1.88300 2.26544 2.51609 3.21604 3.23494 3.66389 3.74110 3.82255 3.92590 4.11553 4.14262 4.23720 4.28244 4.35588 4.50217 4.56842 4.64372 4.83326 4.92815 4.93784 5.00550 5.04426 5.14412 5.20411 5.27120 5.29690 5.38064 5.50004 5.60754 5.63258 5.77175 6.29294 6.36799 6.66004 7.12770 7.12860 7.36788 7.82991 8.32580 9.14983 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002887 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.466290 B = 9696.178615 C =10377.188529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.045 4.045 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.269 4.269 8 H 0.053 0.947 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.140 3.860 14 H 0.057 0.943 15 N -0.709 5.709 16 C 0.510 3.490 17 O -0.586 6.586 18 C -0.113 4.113 19 C -0.010 4.010 20 C 0.224 3.776 21 N -0.577 5.577 22 C 0.278 3.722 23 N -0.476 5.476 24 H 0.458 0.542 25 N -0.346 5.346 26 C 0.145 3.855 27 H 0.253 0.747 28 H 0.054 0.946 29 H 0.005 0.995 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.275 0.725 40 H 0.029 0.971 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -27.046 0.316 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.240 4.240 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.399 4.399 8 H 0.071 0.929 9 N -0.332 5.332 10 C 0.045 3.955 11 C -0.170 4.170 12 C -0.142 4.142 13 C 0.034 3.966 14 H 0.075 0.925 15 N -0.361 5.361 16 C 0.298 3.702 17 O -0.465 6.465 18 C -0.154 4.154 19 C -0.050 4.050 20 C -0.059 4.059 21 N -0.307 5.307 22 C -0.020 4.020 23 N -0.196 5.196 24 H 0.307 0.693 25 N -0.177 5.177 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.290 0.710 40 H 0.047 0.953 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.049 -25.816 0.460 26.765 hybrid contribution 0.221 0.510 0.845 1.011 sum 7.271 -25.306 1.305 26.362 Atomic orbital electron populations 1.70163 1.06366 1.26083 1.54896 1.25722 0.96141 1.01229 1.00950 0.85375 0.77721 0.79317 0.78251 1.20533 1.21164 1.20474 1.19372 0.92613 0.86450 1.41476 0.92949 1.44236 1.36046 1.01564 1.51352 1.20732 0.87525 0.98210 0.88994 1.22019 1.01334 0.95390 0.98222 1.21606 0.95914 0.97537 0.99111 1.21231 0.97902 0.82281 0.95215 0.92507 1.45903 1.09962 1.14652 1.65564 1.21138 0.82140 0.90291 0.76639 1.90732 1.48454 1.51903 1.55458 1.21462 0.96423 0.93348 1.04159 1.19520 0.96102 0.87447 1.01933 1.24164 0.97616 0.96943 0.87196 1.70429 1.24209 0.99838 1.36192 1.27100 0.93598 1.00953 0.80386 1.48100 1.52228 1.08276 1.10989 0.69318 1.77975 1.25479 0.93503 1.20732 1.21228 0.96337 0.86474 0.94188 0.93833 0.92725 0.97691 0.89719 0.93486 0.90600 0.89376 0.74652 0.87108 0.86076 0.89199 0.90250 0.71004 0.95259 0.96165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 11.19 21.65 0.24 -55.86 16 2 C -0.04 -2.60 4.91 84.86 0.42 -2.19 16 3 Si 0.97 47.06 29.59 68.60 2.03 49.09 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.27 -15.96 9.58 84.03 0.81 -15.15 16 8 H 0.05 3.17 7.89 -2.91 -0.02 3.15 16 9 N -0.61 -32.42 2.99 -699.09 -2.09 -34.52 16 10 C 0.17 8.30 5.31 86.36 0.46 8.76 16 11 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 12 C -0.10 -3.09 5.36 30.62 0.16 -2.92 16 13 C 0.14 5.01 2.60 45.07 0.12 5.12 16 14 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 15 N -0.71 -19.06 5.08 -442.17 -2.25 -21.30 16 16 C 0.51 14.97 7.80 87.66 0.68 15.65 16 17 O -0.59 -23.43 15.65 -3.04 -0.05 -23.47 16 18 C -0.11 -2.31 5.68 29.85 0.17 -2.14 16 19 C -0.01 -0.23 5.13 29.85 0.15 -0.07 16 20 C 0.22 5.00 7.39 138.63 1.03 6.03 16 21 N -0.58 -11.19 11.19 -191.81 -2.15 -13.33 16 22 C 0.28 2.66 13.13 180.36 2.37 5.03 16 23 N -0.48 -5.29 7.45 -60.49 -0.45 -5.74 16 24 H 0.46 1.42 8.96 -213.10 -1.91 -0.49 16 25 N -0.35 -7.43 12.80 -51.34 -0.66 -8.08 16 26 C 0.14 6.56 6.09 86.36 0.53 7.09 16 27 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 28 H 0.05 3.02 6.03 -2.39 -0.01 3.00 16 29 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.42 7.70 8.60 -92.71 -0.80 6.91 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 38 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 39 H 0.27 -0.77 8.06 -2.91 -0.02 -0.79 16 40 H 0.03 1.46 7.93 -2.39 -0.02 1.44 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -83.52 341.02 0.05 -83.47 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -1.65 Total: 9.10 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.07 Total: 20.66 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -7.35 Total: -138.84 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -83.52 0.05 -83.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567772434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.630 kcal (2) G-P(sol) polarization free energy of solvation -83.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds