Wall clock time and date at job start Tue Mar 31 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47142 * 270.00193 * 3 2 1 5 5 H 1.48502 * 109.47046 * 29.99934 * 3 2 1 6 6 H 1.48503 * 109.47301 * 149.99790 * 3 2 1 7 7 C 1.38810 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00026 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64561 * 359.97438 * 9 7 2 11 11 C 1.54321 * 107.26799 * 178.98426 * 10 9 7 12 12 C 1.55155 * 102.94617 * 337.80562 * 11 10 9 13 13 H 1.09000 * 111.00553 * 153.61138 * 12 11 10 14 14 N 1.46497 * 111.00511 * 277.43305 * 12 11 10 15 15 C 1.34776 * 119.99810 * 204.99870 * 14 12 11 16 16 O 1.21282 * 120.00087 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99936 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47114 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47242 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47057 * 179.97438 * 19 18 17 21 21 C 1.35350 * 126.91238 * 275.02139 * 20 19 18 22 22 N 1.33768 * 106.49393 * 179.97438 * 21 20 19 23 23 N 1.28637 * 108.88862 * 359.74136 * 22 21 20 24 24 N 1.28715 * 110.17523 * 0.44157 * 23 22 21 25 25 H 0.97001 * 125.86980 * 179.82882 * 24 23 22 26 26 C 1.47416 * 125.65288 * 180.02562 * 9 7 2 27 27 H 0.96997 * 119.99503 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.88246 * 59.56820 * 10 9 7 29 29 H 1.09003 * 110.01107 * 298.47362 * 10 9 7 30 30 H 1.09009 * 110.71821 * 219.44070 * 11 10 9 31 31 H 1.08998 * 110.72179 * 96.17087 * 11 10 9 32 32 H 0.96997 * 120.00074 * 24.99246 * 14 12 11 33 33 H 1.09008 * 109.46923 * 60.00357 * 17 15 14 34 34 H 1.08993 * 109.47433 * 300.00282 * 17 15 14 35 35 H 1.09001 * 109.47191 * 60.00067 * 18 17 15 36 36 H 1.09003 * 109.47208 * 300.00214 * 18 17 15 37 37 H 1.08996 * 109.46738 * 59.99947 * 19 18 17 38 38 H 1.09003 * 109.47003 * 300.00106 * 19 18 17 39 39 H 1.07997 * 126.74979 * 0.02562 * 21 20 19 40 40 H 1.09005 * 110.36714 * 85.24117 * 26 9 7 41 41 H 1.09004 * 110.36573 * 322.92756 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5327 0.0028 11 6 -0.4485 -4.0441 -0.0224 12 6 0.8514 -4.6567 -0.6075 13 1 0.9831 -5.6858 -0.2734 14 7 0.8571 -4.5775 -2.0703 15 6 1.5884 -5.4517 -2.7896 16 8 2.2422 -6.3036 -2.2259 17 6 1.5938 -5.3706 -4.2945 18 6 2.4970 -6.4680 -4.8611 19 6 2.5030 -6.3853 -6.3889 20 6 3.3931 -7.4658 -6.9469 21 6 4.7341 -7.4053 -7.1203 22 7 5.1034 -8.5818 -7.6390 23 7 4.0610 -9.3236 -7.7725 24 7 3.0125 -8.6917 -7.3750 25 1 2.1058 -9.0365 -7.3778 26 6 1.9334 -3.7311 0.0028 27 1 -0.4849 0.8401 0.0004 28 1 -0.5582 -2.0529 -0.8809 29 1 -0.5561 -2.0831 0.9032 30 1 -1.2991 -4.2520 -0.6717 31 1 -0.6310 -4.4171 0.9854 32 1 0.3344 -3.8960 -2.5212 33 1 1.9694 -4.3954 -4.6044 34 1 0.5792 -5.5051 -4.6692 35 1 2.1219 -7.4434 -4.5511 36 1 3.5116 -6.3331 -4.4863 37 1 2.8783 -5.4100 -6.6984 38 1 1.4884 -6.5200 -6.7640 39 1 5.3791 -6.5717 -6.8852 40 1 2.1670 -4.0409 1.0215 41 1 2.8326 -3.7411 -0.6132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:43 Heat of formation + Delta-G solvation = 68.546726 kcal Electronic energy + Delta-G solvation = -22791.350140 eV Core-core repulsion = 19322.607517 eV Total energy + Delta-G solvation = -3468.742622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.56114 -39.67983 -37.40287 -35.51040 -33.75435 -33.53058 -32.02093 -31.34675 -29.26691 -27.96938 -26.88498 -24.53208 -23.36900 -23.07553 -21.70615 -20.49753 -20.10325 -19.78856 -18.55873 -17.16310 -16.66111 -16.33002 -16.00051 -15.79165 -14.77685 -14.71441 -14.63298 -14.13129 -13.81088 -13.72320 -13.40232 -12.75050 -12.60130 -12.23482 -11.97595 -11.96014 -11.85451 -11.69008 -11.23800 -11.01006 -10.95648 -10.92913 -10.84300 -10.75734 -10.40446 -10.17390 -10.00309 -9.72469 -9.61321 -9.40352 -8.78396 -8.56052 -6.87145 -5.77041 -3.09712 1.26425 2.29319 2.44592 2.85921 3.35838 3.42084 3.43628 3.44940 4.10861 4.33933 4.45838 4.60483 4.67537 4.90655 4.92236 5.09748 5.20616 5.27434 5.32978 5.36920 5.42155 5.43562 5.51214 5.73317 5.78957 5.85673 5.88055 6.03972 6.16743 6.32813 6.44447 6.48036 6.52781 6.64677 7.00674 7.48317 7.50806 7.74602 7.84608 8.17223 8.19779 8.49532 9.17217 9.77108 10.42781 11.34900 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.002796 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.512884 B =10011.916338 C =10745.053431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.089 0.911 14 N -0.704 5.704 15 C 0.510 3.490 16 O -0.553 6.553 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.050 4.050 20 C -0.002 4.002 21 C -0.047 4.047 22 N -0.266 5.266 23 N -0.087 5.087 24 N -0.391 5.391 25 H 0.447 0.553 26 C 0.125 3.875 27 H 0.252 0.748 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.192 0.808 40 H 0.027 0.973 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -12.219 -12.736 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.107 0.893 14 N -0.354 5.354 15 C 0.297 3.703 16 O -0.431 6.431 17 C -0.181 4.181 18 C -0.137 4.137 19 C -0.090 4.090 20 C -0.136 4.136 21 C -0.204 4.204 22 N -0.134 5.134 23 N -0.067 5.067 24 N -0.112 5.112 25 H 0.292 0.708 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.209 0.791 40 H 0.045 0.955 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.321 -13.874 -12.921 18.962 hybrid contribution -0.877 2.150 0.342 2.347 sum -1.199 -11.724 -12.578 17.237 Atomic orbital electron populations 1.69951 1.04833 1.25001 1.57423 1.24780 0.95732 0.97614 1.02387 0.86122 0.78639 0.83485 0.77547 1.21643 1.21699 1.20718 1.19058 0.90437 0.82384 1.43415 0.90546 1.44480 1.01463 0.99890 1.87245 1.21163 0.84574 0.87917 1.01243 1.23224 0.95731 1.00075 1.00248 1.22128 0.97310 0.99321 0.79109 0.89324 1.45872 1.48499 1.33721 1.07304 1.20536 0.79099 0.81104 0.89609 1.90683 1.42712 1.36769 1.72955 1.21654 1.02115 1.01622 0.92751 1.21325 1.01468 0.98992 0.91946 1.20255 0.97739 0.95220 0.95791 1.22340 0.96723 0.89440 1.05120 1.23469 0.93061 0.98680 1.05177 1.75097 1.20195 1.02690 1.15371 1.78287 0.88957 1.20534 1.18935 1.45127 1.11767 1.11136 1.43127 0.70802 1.21939 0.94801 0.86377 0.97091 0.93798 0.93628 0.93808 0.91653 0.91029 0.76255 0.88388 0.89001 0.91209 0.90230 0.88299 0.90189 0.79145 0.95544 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.07 10.31 55.49 0.57 -25.50 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.22 -6.08 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.72 3.39 -170.07 -0.58 -15.30 16 10 C 0.18 3.95 5.36 -3.06 -0.02 3.94 16 11 C -0.15 -2.61 6.55 -24.90 -0.16 -2.77 16 12 C 0.13 2.16 3.43 -65.78 -0.23 1.94 16 13 H 0.09 1.49 7.54 -51.93 -0.39 1.10 16 14 N -0.70 -10.48 5.19 -51.73 -0.27 -10.74 16 15 C 0.51 7.17 7.83 -10.99 -0.09 7.08 16 16 O -0.55 -9.77 15.62 5.56 0.09 -9.68 16 17 C -0.14 -1.25 5.70 -27.88 -0.16 -1.41 16 18 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 19 C -0.05 -0.28 5.78 -27.88 -0.16 -0.44 16 20 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 21 C -0.05 -0.45 11.99 -17.74 -0.21 -0.66 16 22 N -0.27 -3.34 12.41 30.23 0.38 -2.96 16 23 N -0.09 -0.99 13.38 60.35 0.81 -0.19 16 24 N -0.39 -3.04 6.98 33.54 0.23 -2.80 16 25 H 0.45 1.77 8.96 -190.40 -1.71 0.07 16 26 C 0.13 2.59 6.93 -2.53 -0.02 2.57 16 27 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.05 1.11 7.38 -51.93 -0.38 0.72 16 29 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.40 5.59 8.67 -40.82 -0.35 5.24 16 33 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -34.51 344.12 -7.98 -42.48 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.42 Total: 0.78 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.95 Total: 2.16 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 1.14 Total: -57.49 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.51 -7.98 -42.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.029 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds