Wall clock time and date at job start Tue Mar 31 2020 03:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47142 * 270.00193 * 3 2 1 5 5 H 1.48502 * 109.47046 * 29.99934 * 3 2 1 6 6 H 1.48503 * 109.47301 * 149.99790 * 3 2 1 7 7 C 1.38810 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00026 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64561 * 359.97438 * 9 7 2 11 11 C 1.54321 * 107.26799 * 178.98426 * 10 9 7 12 12 C 1.55155 * 102.94617 * 337.80562 * 11 10 9 13 13 H 1.09000 * 111.00553 * 153.61138 * 12 11 10 14 14 N 1.46497 * 111.00511 * 277.43305 * 12 11 10 15 15 C 1.34776 * 119.99810 * 204.99870 * 14 12 11 16 16 O 1.21282 * 120.00087 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99936 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47114 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47242 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47057 * 179.97438 * 19 18 17 21 21 C 1.35350 * 126.91238 * 275.02139 * 20 19 18 22 22 N 1.33768 * 106.49393 * 179.97438 * 21 20 19 23 23 N 1.28637 * 108.88862 * 359.74136 * 22 21 20 24 24 N 1.28715 * 110.17523 * 0.44157 * 23 22 21 25 25 H 0.97001 * 125.86980 * 179.82882 * 24 23 22 26 26 C 1.47416 * 125.65288 * 180.02562 * 9 7 2 27 27 H 0.96997 * 119.99503 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.88246 * 59.56820 * 10 9 7 29 29 H 1.09003 * 110.01107 * 298.47362 * 10 9 7 30 30 H 1.09009 * 110.71821 * 219.44070 * 11 10 9 31 31 H 1.08998 * 110.72179 * 96.17087 * 11 10 9 32 32 H 0.96997 * 120.00074 * 24.99246 * 14 12 11 33 33 H 1.09008 * 109.46923 * 60.00357 * 17 15 14 34 34 H 1.08993 * 109.47433 * 300.00282 * 17 15 14 35 35 H 1.09001 * 109.47191 * 60.00067 * 18 17 15 36 36 H 1.09003 * 109.47208 * 300.00214 * 18 17 15 37 37 H 1.08996 * 109.46738 * 59.99947 * 19 18 17 38 38 H 1.09003 * 109.47003 * 300.00106 * 19 18 17 39 39 H 1.07997 * 126.74979 * 0.02562 * 21 20 19 40 40 H 1.09005 * 110.36714 * 85.24117 * 26 9 7 41 41 H 1.09004 * 110.36573 * 322.92756 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5327 0.0028 11 6 -0.4485 -4.0441 -0.0224 12 6 0.8514 -4.6567 -0.6075 13 1 0.9831 -5.6858 -0.2734 14 7 0.8571 -4.5775 -2.0703 15 6 1.5884 -5.4517 -2.7896 16 8 2.2422 -6.3036 -2.2259 17 6 1.5938 -5.3706 -4.2945 18 6 2.4970 -6.4680 -4.8611 19 6 2.5030 -6.3853 -6.3889 20 6 3.3931 -7.4658 -6.9469 21 6 4.7341 -7.4053 -7.1203 22 7 5.1034 -8.5818 -7.6390 23 7 4.0610 -9.3236 -7.7725 24 7 3.0125 -8.6917 -7.3750 25 1 2.1058 -9.0365 -7.3778 26 6 1.9334 -3.7311 0.0028 27 1 -0.4849 0.8401 0.0004 28 1 -0.5582 -2.0529 -0.8809 29 1 -0.5561 -2.0831 0.9032 30 1 -1.2991 -4.2520 -0.6717 31 1 -0.6310 -4.4171 0.9854 32 1 0.3344 -3.8960 -2.5212 33 1 1.9694 -4.3954 -4.6044 34 1 0.5792 -5.5051 -4.6692 35 1 2.1219 -7.4434 -4.5511 36 1 3.5116 -6.3331 -4.4863 37 1 2.8783 -5.4100 -6.6984 38 1 1.4884 -6.5200 -6.7640 39 1 5.3791 -6.5717 -6.8852 40 1 2.1670 -4.0409 1.0215 41 1 2.8326 -3.7411 -0.6132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577706714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:42 Heat of formation + Delta-G solvation = 42.920970 kcal Electronic energy + Delta-G solvation = -22792.461356 eV Core-core repulsion = 19322.607517 eV Total energy + Delta-G solvation = -3469.853839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.25917 -40.88925 -38.91474 -36.22459 -35.33679 -34.25248 -33.61400 -32.24266 -30.97269 -29.22354 -28.02824 -26.37685 -24.18077 -23.85034 -22.43877 -21.97742 -21.51196 -21.07706 -19.25458 -18.89987 -17.89599 -17.26796 -17.01837 -16.72801 -16.61362 -15.71949 -15.64713 -15.40221 -15.08272 -14.90090 -14.51569 -14.00368 -13.84932 -13.54879 -13.38019 -13.06090 -12.88047 -12.77763 -12.69569 -12.36574 -12.25015 -12.08363 -12.00421 -11.94375 -11.79767 -11.59729 -11.57117 -11.53095 -10.77929 -10.70419 -10.11012 -9.98200 -8.85015 -7.84237 -5.18286 0.59889 1.47572 1.48648 1.54668 1.57206 1.77174 1.91977 2.37791 2.50399 3.34835 3.53298 3.69283 3.76671 3.77304 3.91845 4.03775 4.10452 4.24612 4.28298 4.34186 4.46526 4.59669 4.69953 4.76742 4.78750 4.83130 4.89957 4.92688 5.04315 5.06920 5.20626 5.27683 5.41219 5.45911 5.64154 5.71321 5.79147 6.03176 6.21290 6.71334 7.13171 7.38615 7.44291 7.78547 8.42649 9.25661 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.002796 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.512884 B =10011.916338 C =10745.053431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.974 3.026 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.620 5.620 10 C 0.184 3.816 11 C -0.134 4.134 12 C 0.141 3.859 13 H 0.098 0.902 14 N -0.705 5.705 15 C 0.505 3.495 16 O -0.593 6.593 17 C -0.131 4.131 18 C -0.093 4.093 19 C -0.040 4.040 20 C 0.011 3.989 21 C -0.065 4.065 22 N -0.307 5.307 23 N -0.118 5.118 24 N -0.376 5.376 25 H 0.462 0.538 26 C 0.121 3.879 27 H 0.247 0.753 28 H 0.024 0.976 29 H 0.006 0.994 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.410 0.590 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.208 0.792 40 H 0.025 0.975 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -12.180 -14.007 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.347 5.347 10 C 0.059 3.941 11 C -0.173 4.173 12 C 0.034 3.966 13 H 0.115 0.885 14 N -0.355 5.355 15 C 0.294 3.706 16 O -0.474 6.474 17 C -0.171 4.171 18 C -0.132 4.132 19 C -0.079 4.079 20 C -0.124 4.124 21 C -0.223 4.223 22 N -0.173 5.173 23 N -0.098 5.098 24 N -0.099 5.099 25 H 0.311 0.689 26 C -0.005 4.005 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.245 0.755 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.225 0.775 40 H 0.043 0.957 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.357 -13.876 -14.219 19.914 hybrid contribution -0.544 2.139 0.803 2.349 sum -1.901 -11.737 -13.416 17.927 Atomic orbital electron populations 1.70144 1.05934 1.25242 1.58208 1.25519 0.96603 1.00516 1.02615 0.85151 0.77490 0.79511 0.77593 1.20928 1.22120 1.20143 1.19339 0.90682 0.83837 1.43089 0.90920 1.44706 1.02481 1.00477 1.87009 1.20953 0.83359 0.91433 0.98331 1.23071 0.96686 0.95569 1.01930 1.21865 0.95515 0.98564 0.80628 0.88458 1.45895 1.48951 1.34267 1.06346 1.21494 0.77583 0.79792 0.91733 1.90671 1.44146 1.38315 1.74234 1.21700 1.04422 1.02504 0.88427 1.21227 0.99886 0.98257 0.93849 1.20299 0.99121 0.95085 0.93364 1.22671 0.96426 0.89591 1.03741 1.23943 0.94463 0.98562 1.05320 1.75045 1.21306 1.04071 1.16894 1.78209 0.89705 1.21291 1.20583 1.45163 1.12008 1.10941 1.41772 0.68884 1.22059 0.95535 0.85768 0.97143 0.94324 0.95811 0.97603 0.88603 0.89704 0.75481 0.86789 0.85398 0.92372 0.92678 0.86436 0.86987 0.77520 0.95714 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.08 10.31 21.65 0.22 -53.85 16 2 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 3 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -13.14 10.28 84.03 0.86 -12.27 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.62 -30.42 3.39 -691.99 -2.35 -32.77 16 10 C 0.18 8.29 5.36 86.73 0.47 8.76 16 11 C -0.13 -4.28 6.55 31.78 0.21 -4.08 16 12 C 0.14 4.57 3.43 46.38 0.16 4.73 16 13 H 0.10 3.08 7.54 -2.39 -0.02 3.06 16 14 N -0.70 -19.46 5.19 -435.97 -2.26 -21.72 16 15 C 0.51 13.10 7.83 87.66 0.69 13.79 16 16 O -0.59 -20.31 15.62 -3.04 -0.05 -20.35 16 17 C -0.13 -1.84 5.70 29.85 0.17 -1.67 16 18 C -0.09 -1.30 4.49 30.60 0.14 -1.16 16 19 C -0.04 -0.28 5.78 29.85 0.17 -0.11 16 20 C 0.01 0.15 6.56 41.36 0.27 0.42 16 21 C -0.07 -1.19 11.99 83.73 1.00 -0.19 16 22 N -0.31 -7.69 12.41 -58.26 -0.72 -8.42 16 23 N -0.12 -2.66 13.38 37.02 0.50 -2.17 16 24 N -0.38 -5.22 6.98 -47.79 -0.33 -5.55 16 25 H 0.46 2.66 8.96 -219.96 -1.97 0.69 16 26 C 0.12 5.00 6.93 86.86 0.60 5.61 16 27 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 29 H 0.01 0.30 7.50 -2.39 -0.02 0.28 16 30 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.41 10.34 8.67 -92.71 -0.80 9.53 16 33 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 37 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.21 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.57 344.12 0.52 -77.05 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -1.72 Total: 10.26 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.20 Total: 11.04 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -4.95 Total: -124.48 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -77.57 0.52 -77.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.973 kcal (2) G-P(sol) polarization free energy of solvation -77.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds