Wall clock time and date at job start Tue Mar 31 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00232 * 2 1 4 4 H 1.48494 * 109.47300 * 274.99216 * 3 2 1 5 5 H 1.48506 * 109.46940 * 34.99107 * 3 2 1 6 6 H 1.48498 * 109.46840 * 154.98787 * 3 2 1 7 7 C 1.38813 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99878 * 187.05658 * 7 2 1 9 9 N 1.36940 * 120.00226 * 7.05110 * 7 2 1 10 10 C 1.47023 * 125.64611 * 354.79902 * 9 7 2 11 11 C 1.54316 * 107.27027 * 178.96219 * 10 9 7 12 12 C 1.55156 * 102.94272 * 337.80666 * 11 10 9 13 13 H 1.09003 * 111.00265 * 277.38988 * 12 11 10 14 14 N 1.46505 * 111.00516 * 153.57896 * 12 11 10 15 15 C 1.34779 * 119.99978 * 155.00045 * 14 12 11 16 16 O 1.21277 * 120.00291 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99838 * 179.97438 * 15 14 12 18 18 C 1.53003 * 109.47227 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47192 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.47305 * 179.97438 * 19 18 17 21 21 C 1.35346 * 126.91116 * 84.99938 * 20 19 18 22 22 N 1.33773 * 106.50005 * 180.02562 * 21 20 19 23 23 N 1.28644 * 108.88355 * 359.97438 * 22 21 20 24 24 N 1.28719 * 110.17531 * 0.02562 * 23 22 21 25 25 H 0.96994 * 125.86355 * 180.02562 * 24 23 22 26 26 C 1.47419 * 125.65072 * 174.82481 * 9 7 2 27 27 H 0.96998 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.88149 * 59.54465 * 10 9 7 29 29 H 1.08998 * 110.01295 * 298.45339 * 10 9 7 30 30 H 1.09001 * 110.72281 * 219.44608 * 11 10 9 31 31 H 1.09000 * 110.87937 * 96.24220 * 11 10 9 32 32 H 0.96997 * 119.99839 * 335.00001 * 14 12 11 33 33 H 1.09000 * 109.46913 * 59.99840 * 17 15 14 34 34 H 1.09002 * 109.47035 * 300.00222 * 17 15 14 35 35 H 1.08995 * 109.46704 * 59.99431 * 18 17 15 36 36 H 1.09002 * 109.46540 * 299.99864 * 18 17 15 37 37 H 1.09000 * 109.46890 * 59.99838 * 19 18 17 38 38 H 1.09002 * 109.47093 * 300.00198 * 19 18 17 39 39 H 1.08004 * 126.75650 * 0.02562 * 21 20 19 40 40 H 1.08995 * 110.36914 * 85.26600 * 26 9 7 41 41 H 1.09005 * 110.36275 * 322.94483 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1144 9 7 1.3333 -2.3836 -0.1466 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4289 -4.0330 -0.4002 12 6 0.8910 -4.5746 -1.0101 13 1 0.9254 -4.3993 -2.0854 14 7 1.0644 -5.9975 -0.7071 15 6 1.8202 -6.7706 -1.5119 16 8 2.3563 -6.2886 -2.4871 17 6 1.9990 -8.2341 -1.1999 18 6 2.8952 -8.8759 -2.2609 19 6 3.0773 -10.3616 -1.9439 20 6 3.9595 -10.9939 -2.9892 21 6 5.3126 -11.0187 -3.0040 22 7 5.6684 -11.6807 -4.1107 23 7 4.6058 -12.0423 -4.7393 24 7 3.5582 -11.6509 -4.1020 25 1 2.6391 -11.8017 -4.3727 26 6 1.9493 -3.7169 -0.2726 27 1 -0.4850 0.8400 0.0004 28 1 -0.5267 -1.9612 -1.0420 29 1 -0.5751 -2.1837 0.7278 30 1 -1.2592 -4.1725 -1.0924 31 1 -0.6392 -4.5155 0.5542 32 1 0.6353 -6.3831 0.0726 33 1 1.0266 -8.7267 -1.1987 34 1 2.4624 -8.3426 -0.2193 35 1 3.8674 -8.3831 -2.2617 36 1 2.4320 -8.7674 -3.2417 37 1 2.1051 -10.8546 -1.9428 38 1 3.5405 -10.4696 -0.9631 39 1 5.9750 -10.5887 -2.2673 40 1 2.1558 -4.1341 0.7130 41 1 2.8657 -3.6575 -0.8599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:45 Heat of formation + Delta-G solvation = 69.645581 kcal Electronic energy + Delta-G solvation = -22451.244907 eV Core-core repulsion = 18982.549934 eV Total energy + Delta-G solvation = -3468.694972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.61511 -39.75878 -37.38781 -35.61518 -34.04609 -33.58729 -32.08035 -31.45508 -29.24847 -28.05813 -26.76045 -24.53425 -23.38845 -23.07647 -21.74553 -20.54550 -20.35831 -19.89116 -18.61882 -17.22101 -16.75676 -16.37692 -16.09741 -15.82759 -14.86212 -14.78209 -14.60092 -14.26476 -14.02746 -13.73366 -13.17165 -12.69089 -12.58689 -12.44669 -12.17546 -12.08594 -11.83453 -11.77465 -11.32165 -11.04700 -11.02241 -10.95367 -10.89815 -10.78032 -10.40194 -10.10798 -9.93830 -9.79881 -9.66484 -9.46869 -8.77795 -8.59668 -6.86528 -5.75173 -3.07536 1.20760 2.23972 2.39119 2.73157 3.27464 3.40500 3.45999 3.47399 4.02672 4.25772 4.47503 4.52305 4.56821 4.77900 4.82097 5.02076 5.11218 5.17457 5.25146 5.28234 5.33804 5.41729 5.57162 5.71017 5.74820 5.78377 5.80567 5.95005 6.15108 6.28574 6.37595 6.47320 6.55308 6.66255 6.93673 7.48632 7.56337 7.66159 7.79258 8.12078 8.21950 8.36598 9.19068 9.79248 10.44297 11.37188 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.002353 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.390725 B =11895.577614 C =12453.997655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.096 0.904 14 N -0.718 5.718 15 C 0.507 3.493 16 O -0.541 6.541 17 C -0.140 4.140 18 C -0.101 4.101 19 C -0.049 4.049 20 C -0.004 4.004 21 C -0.047 4.047 22 N -0.266 5.266 23 N -0.086 5.086 24 N -0.390 5.390 25 H 0.447 0.553 26 C 0.130 3.870 27 H 0.253 0.747 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.191 0.809 40 H 0.019 0.981 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 -23.500 -0.503 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.114 0.886 14 N -0.368 5.368 15 C 0.293 3.707 16 O -0.418 6.418 17 C -0.180 4.180 18 C -0.140 4.140 19 C -0.089 4.089 20 C -0.138 4.138 21 C -0.204 4.204 22 N -0.133 5.133 23 N -0.066 5.066 24 N -0.111 5.111 25 H 0.292 0.708 26 C 0.002 3.998 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.208 0.792 40 H 0.036 0.964 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.089 -23.645 -2.421 23.793 hybrid contribution -0.870 1.234 1.225 1.944 sum 0.219 -22.411 -1.195 22.444 Atomic orbital electron populations 1.69959 1.04934 1.25126 1.56875 1.24830 0.95742 0.97718 1.02084 0.86096 0.78689 0.83430 0.77563 1.21543 1.21760 1.20587 1.19074 0.91201 0.82431 1.42941 0.90346 1.44391 1.01612 1.00935 1.86151 1.21149 0.84657 0.87726 1.01196 1.23171 0.95753 1.00299 0.99570 1.22313 0.96800 0.78042 1.00784 0.88619 1.46053 1.51294 1.10362 1.29103 1.20602 0.78561 0.88516 0.83016 1.90734 1.47511 1.75312 1.28200 1.21662 1.02076 0.92961 1.01338 1.21347 1.01355 0.92360 0.98936 1.20233 0.97923 0.95223 0.95485 1.22315 0.96271 1.02441 0.92787 1.23467 0.92973 1.04521 0.99401 1.75112 1.19890 1.12533 1.05771 1.78304 0.88599 1.19902 1.19760 1.45132 1.11169 1.38106 1.16701 0.70778 1.21819 0.94989 0.86715 0.96277 0.93711 0.93122 0.93757 0.91709 0.92074 0.76911 0.88938 0.88550 0.90135 0.91065 0.90217 0.88375 0.79166 0.96373 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.36 55.49 0.57 -26.34 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.43 10.27 -15.06 -0.15 -6.58 16 8 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 9 N -0.60 -15.47 3.39 -170.08 -0.58 -16.05 16 10 C 0.18 4.20 5.38 -3.07 -0.02 4.18 16 11 C -0.15 -2.57 6.60 -24.90 -0.16 -2.73 16 12 C 0.13 2.19 3.42 -65.78 -0.23 1.96 16 13 H 0.10 1.88 7.54 -51.93 -0.39 1.49 16 14 N -0.72 -9.08 5.20 -51.73 -0.27 -9.35 16 15 C 0.51 6.40 7.83 -10.99 -0.09 6.31 16 16 O -0.54 -9.46 15.62 5.56 0.09 -9.38 16 17 C -0.14 -0.95 5.70 -27.88 -0.16 -1.11 16 18 C -0.10 -0.72 4.49 -26.73 -0.12 -0.84 16 19 C -0.05 -0.20 5.78 -27.89 -0.16 -0.37 16 20 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 21 C -0.05 -0.41 11.99 -17.74 -0.21 -0.62 16 22 N -0.27 -3.18 12.41 30.24 0.38 -2.81 16 23 N -0.09 -0.94 13.38 60.35 0.81 -0.13 16 24 N -0.39 -2.79 6.98 33.54 0.23 -2.55 16 25 H 0.45 1.51 8.96 -190.40 -1.71 -0.19 16 26 C 0.13 2.73 6.93 -2.53 -0.02 2.71 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 29 H 0.04 1.14 7.61 -51.93 -0.40 0.75 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 32 H 0.40 3.70 8.57 -40.82 -0.35 3.35 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.73 8.10 -51.93 -0.42 0.30 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.19 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -36.47 344.01 -7.97 -44.44 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.41 Total: -2.23 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.95 Total: 2.03 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 1.15 Total: -57.23 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.47 -7.97 -44.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.082 kcal (2) G-P(sol) polarization free energy of solvation -36.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds