Wall clock time and date at job start Tue Mar 31 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00232 * 2 1 4 4 H 1.48494 * 109.47300 * 274.99216 * 3 2 1 5 5 H 1.48506 * 109.46940 * 34.99107 * 3 2 1 6 6 H 1.48498 * 109.46840 * 154.98787 * 3 2 1 7 7 C 1.38813 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99878 * 187.05658 * 7 2 1 9 9 N 1.36940 * 120.00226 * 7.05110 * 7 2 1 10 10 C 1.47023 * 125.64611 * 354.79902 * 9 7 2 11 11 C 1.54316 * 107.27027 * 178.96219 * 10 9 7 12 12 C 1.55156 * 102.94272 * 337.80666 * 11 10 9 13 13 H 1.09003 * 111.00265 * 277.38988 * 12 11 10 14 14 N 1.46505 * 111.00516 * 153.57896 * 12 11 10 15 15 C 1.34779 * 119.99978 * 155.00045 * 14 12 11 16 16 O 1.21277 * 120.00291 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99838 * 179.97438 * 15 14 12 18 18 C 1.53003 * 109.47227 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47192 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.47305 * 179.97438 * 19 18 17 21 21 C 1.35346 * 126.91116 * 84.99938 * 20 19 18 22 22 N 1.33773 * 106.50005 * 180.02562 * 21 20 19 23 23 N 1.28644 * 108.88355 * 359.97438 * 22 21 20 24 24 N 1.28719 * 110.17531 * 0.02562 * 23 22 21 25 25 H 0.96994 * 125.86355 * 180.02562 * 24 23 22 26 26 C 1.47419 * 125.65072 * 174.82481 * 9 7 2 27 27 H 0.96998 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.88149 * 59.54465 * 10 9 7 29 29 H 1.08998 * 110.01295 * 298.45339 * 10 9 7 30 30 H 1.09001 * 110.72281 * 219.44608 * 11 10 9 31 31 H 1.09000 * 110.87937 * 96.24220 * 11 10 9 32 32 H 0.96997 * 119.99839 * 335.00001 * 14 12 11 33 33 H 1.09000 * 109.46913 * 59.99840 * 17 15 14 34 34 H 1.09002 * 109.47035 * 300.00222 * 17 15 14 35 35 H 1.08995 * 109.46704 * 59.99431 * 18 17 15 36 36 H 1.09002 * 109.46540 * 299.99864 * 18 17 15 37 37 H 1.09000 * 109.46890 * 59.99838 * 19 18 17 38 38 H 1.09002 * 109.47093 * 300.00198 * 19 18 17 39 39 H 1.08004 * 126.75650 * 0.02562 * 21 20 19 40 40 H 1.08995 * 110.36914 * 85.26600 * 26 9 7 41 41 H 1.09005 * 110.36275 * 322.94483 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1144 9 7 1.3333 -2.3836 -0.1466 10 6 -0.1283 -2.5322 -0.2033 11 6 -0.4289 -4.0330 -0.4002 12 6 0.8910 -4.5746 -1.0101 13 1 0.9254 -4.3993 -2.0854 14 7 1.0644 -5.9975 -0.7071 15 6 1.8202 -6.7706 -1.5119 16 8 2.3563 -6.2886 -2.4871 17 6 1.9990 -8.2341 -1.1999 18 6 2.8952 -8.8759 -2.2609 19 6 3.0773 -10.3616 -1.9439 20 6 3.9595 -10.9939 -2.9892 21 6 5.3126 -11.0187 -3.0040 22 7 5.6684 -11.6807 -4.1107 23 7 4.6058 -12.0423 -4.7393 24 7 3.5582 -11.6509 -4.1020 25 1 2.6391 -11.8017 -4.3727 26 6 1.9493 -3.7169 -0.2726 27 1 -0.4850 0.8400 0.0004 28 1 -0.5267 -1.9612 -1.0420 29 1 -0.5751 -2.1837 0.7278 30 1 -1.2592 -4.1725 -1.0924 31 1 -0.6392 -4.5155 0.5542 32 1 0.6353 -6.3831 0.0726 33 1 1.0266 -8.7267 -1.1987 34 1 2.4624 -8.3426 -0.2193 35 1 3.8674 -8.3831 -2.2617 36 1 2.4320 -8.7674 -3.2417 37 1 2.1051 -10.8546 -1.9428 38 1 3.5405 -10.4696 -0.9631 39 1 5.9750 -10.5887 -2.2673 40 1 2.1558 -4.1341 0.7130 41 1 2.8657 -3.6575 -0.8599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577706715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:45 Heat of formation + Delta-G solvation = 41.242790 kcal Electronic energy + Delta-G solvation = -22452.476544 eV Core-core repulsion = 18982.549934 eV Total energy + Delta-G solvation = -3469.926610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.24945 -40.87573 -38.94650 -36.23554 -35.54560 -34.24777 -33.76032 -32.26332 -30.99817 -29.21089 -27.95413 -26.36712 -24.13334 -23.80572 -22.41805 -22.08887 -21.72057 -21.13070 -19.25546 -18.98097 -17.91306 -17.25406 -17.01461 -16.70681 -16.66326 -15.96621 -15.59772 -15.41269 -14.90011 -14.88233 -14.42922 -14.15304 -13.97281 -13.68386 -13.36174 -13.06588 -12.95488 -12.79576 -12.69143 -12.37056 -12.34319 -12.11140 -12.03137 -11.92900 -11.83888 -11.59489 -11.56319 -11.51239 -10.80917 -10.71287 -10.10233 -10.01939 -8.92908 -7.89751 -5.24288 0.60993 1.44075 1.46807 1.55167 1.55749 1.76614 1.93145 2.25466 2.49907 3.29395 3.54447 3.68381 3.73602 3.78240 3.96084 4.05020 4.07587 4.21895 4.25916 4.29391 4.48299 4.58469 4.65383 4.74789 4.81679 4.85861 4.88147 4.92292 4.99319 5.14954 5.22129 5.29487 5.41088 5.43972 5.60060 5.65183 5.72773 6.03759 6.17320 6.71129 7.07507 7.42003 7.45203 7.73469 8.36789 9.20835 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.002353 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.390725 B =11895.577614 C =12453.997655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.627 5.627 10 C 0.181 3.819 11 C -0.127 4.127 12 C 0.145 3.855 13 H 0.068 0.932 14 N -0.704 5.704 15 C 0.501 3.499 16 O -0.597 6.597 17 C -0.125 4.125 18 C -0.099 4.099 19 C -0.037 4.037 20 C 0.010 3.990 21 C -0.066 4.066 22 N -0.308 5.308 23 N -0.121 5.121 24 N -0.377 5.377 25 H 0.462 0.538 26 C 0.128 3.872 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.419 0.581 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.210 0.790 40 H 0.035 0.965 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -25.648 1.222 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.056 3.944 11 C -0.165 4.165 12 C 0.038 3.962 13 H 0.086 0.914 14 N -0.356 5.356 15 C 0.290 3.710 16 O -0.477 6.477 17 C -0.165 4.165 18 C -0.138 4.138 19 C -0.076 4.076 20 C -0.125 4.125 21 C -0.224 4.224 22 N -0.175 5.175 23 N -0.101 5.101 24 N -0.100 5.100 25 H 0.311 0.689 26 C 0.001 3.999 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.257 0.743 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.226 0.774 40 H 0.053 0.947 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.216 -25.869 -0.684 25.879 hybrid contribution -0.593 1.913 0.702 2.122 sum -0.377 -23.956 0.017 23.959 Atomic orbital electron populations 1.70164 1.06169 1.25465 1.57731 1.25658 0.96696 1.00933 1.02296 0.85080 0.77920 0.79197 0.77278 1.21597 1.21629 1.19313 1.19414 0.91549 0.83987 1.42688 0.90482 1.44692 1.02762 1.01926 1.86063 1.20957 0.83506 0.91836 0.98113 1.22970 0.96150 0.95493 1.01899 1.21716 0.95298 0.80597 0.98617 0.91367 1.45827 1.51627 1.08038 1.30134 1.21761 0.76824 0.90768 0.81674 1.90728 1.49544 1.76801 1.30676 1.21713 1.04347 0.88031 1.02384 1.21269 0.99946 0.94247 0.98361 1.20312 0.99258 0.92736 0.95316 1.22758 0.96050 1.01050 0.92682 1.23978 0.94522 1.04624 0.99249 1.75051 1.21014 1.14080 1.07321 1.78224 0.89364 1.21615 1.20861 1.45183 1.11410 1.37071 1.16322 0.68934 1.21958 0.95169 0.85699 0.97077 0.94184 0.97001 0.96631 0.89529 0.88676 0.74274 0.84975 0.85268 0.92753 0.93100 0.86918 0.85808 0.77356 0.94720 0.96014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.93 10.36 21.65 0.22 -56.70 16 2 C -0.06 -3.60 5.48 84.86 0.46 -3.14 16 3 Si 0.98 46.38 29.56 68.60 2.03 48.40 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.25 -14.25 10.27 84.03 0.86 -13.39 16 8 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 9 N -0.63 -32.78 3.39 -692.02 -2.35 -35.13 16 10 C 0.18 8.72 5.38 86.73 0.47 9.18 16 11 C -0.13 -4.12 6.60 31.78 0.21 -3.91 16 12 C 0.14 4.85 3.42 46.38 0.16 5.01 16 13 H 0.07 2.71 7.54 -2.39 -0.02 2.69 16 14 N -0.70 -15.52 5.20 -435.96 -2.27 -17.79 16 15 C 0.50 11.30 7.83 87.66 0.69 11.99 16 16 O -0.60 -20.70 15.62 -3.02 -0.05 -20.74 16 17 C -0.13 -1.09 5.70 29.85 0.17 -0.92 16 18 C -0.10 -1.10 4.49 30.59 0.14 -0.96 16 19 C -0.04 -0.14 5.78 29.84 0.17 0.03 16 20 C 0.01 0.11 6.56 41.35 0.27 0.38 16 21 C -0.07 -1.10 11.99 83.73 1.00 -0.10 16 22 N -0.31 -7.45 12.41 -58.26 -0.72 -8.17 16 23 N -0.12 -2.64 13.38 37.02 0.50 -2.15 16 24 N -0.38 -4.83 6.98 -47.79 -0.33 -5.16 16 25 H 0.46 2.21 8.96 -219.96 -1.97 0.24 16 26 C 0.13 5.35 6.93 86.85 0.60 5.95 16 27 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.01 0.64 7.30 -2.39 -0.02 0.63 16 29 H 0.02 0.82 7.61 -2.39 -0.02 0.80 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 32 H 0.42 5.68 8.57 -92.71 -0.79 4.88 16 33 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 37 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -86.28 344.01 0.53 -85.76 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -1.71 Total: 1.54 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.21 Total: 10.14 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -4.95 Total: -125.10 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -86.28 0.53 -85.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.002 kcal (2) G-P(sol) polarization free energy of solvation -86.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds