Wall clock time and date at job start Tue Mar 31 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.53002 * 109.47232 * 119.99235 * 2 1 3 5 5 N 1.46494 * 109.47312 * 174.99911 * 4 2 1 6 6 C 1.46500 * 120.00368 * 270.00429 * 5 4 2 7 7 C 1.36937 * 119.99765 * 90.00040 * 5 4 2 8 8 H 1.08001 * 119.99932 * 23.67598 * 7 5 4 9 9 C 1.38812 * 119.99961 * 203.66530 * 7 5 4 10 10 N 1.31628 * 120.00013 * 11.23808 * 9 7 5 11 11 Si 1.86801 * 120.00144 * 191.23055 * 9 7 5 12 12 H 1.48502 * 109.46827 * 90.00511 * 11 9 7 13 13 H 1.48496 * 109.47292 * 210.00441 * 11 9 7 14 14 H 1.48502 * 109.47197 * 330.00701 * 11 9 7 15 15 N 1.46500 * 109.47295 * 239.99519 * 2 1 3 16 16 C 1.34780 * 119.99997 * 84.99955 * 15 2 1 17 17 O 1.21621 * 119.99642 * 359.97438 * 16 15 2 18 18 C 1.47286 * 120.00060 * 180.02562 * 16 15 2 19 19 C 1.37983 * 120.87973 * 359.97438 * 18 16 15 20 20 N 1.34353 * 120.37128 * 179.97438 * 19 18 16 21 21 C 1.46499 * 118.80659 * 180.02562 * 20 19 18 22 22 C 1.35575 * 122.38840 * 0.02562 * 20 19 18 23 23 C 1.34872 * 121.80076 * 0.02562 * 22 20 19 24 24 C 1.41669 * 119.33695 * 0.25289 * 23 22 20 25 25 O 1.22087 * 121.06765 * 179.72493 * 24 23 22 26 26 H 1.09003 * 109.47442 * 300.00331 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00245 * 1 2 3 28 28 H 1.08998 * 109.47550 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47281 * 295.00560 * 4 2 1 30 30 H 1.09003 * 109.46653 * 55.00526 * 4 2 1 31 31 H 1.09003 * 109.47212 * 94.61709 * 6 5 4 32 32 H 1.09001 * 109.47187 * 214.61921 * 6 5 4 33 33 H 1.08999 * 109.46778 * 334.61658 * 6 5 4 34 34 H 0.97002 * 120.00001 * 179.97438 * 10 9 7 35 35 H 0.96997 * 120.00280 * 265.00306 * 15 2 1 36 36 H 1.08004 * 119.82099 * 0.02562 * 19 18 16 37 37 H 1.08998 * 109.46928 * 269.98075 * 21 20 19 38 38 H 1.09005 * 109.46736 * 29.97861 * 21 20 19 39 39 H 1.08997 * 109.47269 * 149.97626 * 21 20 19 40 40 H 1.07995 * 119.10224 * 180.02562 * 22 20 19 41 41 H 1.08000 * 120.32861 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.4999 -0.8262 1.1907 6 6 4.1258 -1.9918 0.5614 7 6 4.2797 0.1651 1.7240 8 1 3.8835 0.8067 2.4971 9 6 5.5795 0.3450 1.2711 10 7 5.9914 -0.2793 0.1880 11 14 6.7439 1.4735 2.1986 12 1 7.4753 0.6920 3.2280 13 1 7.7156 2.0714 1.2481 14 1 5.9666 2.5539 2.8570 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8573 1.1615 -2.4119 18 6 2.6375 -0.7130 -3.5598 19 6 2.9709 -2.0513 -3.5183 20 7 3.4168 -2.6748 -4.6217 21 6 3.7604 -4.0965 -4.5389 22 6 3.5603 -2.0361 -5.8089 23 6 3.2626 -0.7286 -5.9531 24 6 2.7915 0.0034 -4.8353 25 8 2.5173 1.1894 -4.9290 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7515 -0.1581 2.1370 30 1 1.6054 -1.7197 1.2953 31 1 4.3546 -1.7637 -0.4796 32 1 5.0463 -2.2396 1.0899 33 1 3.4420 -2.8395 0.6058 34 1 6.8996 -0.1532 -0.1287 35 1 2.2490 -1.6318 -1.1525 36 1 2.8721 -2.6009 -2.5938 37 1 4.8111 -4.2012 -4.2687 38 1 3.1407 -4.5765 -3.7814 39 1 3.5848 -4.5696 -5.5051 40 1 3.9231 -2.5893 -6.6625 41 1 3.3863 -0.2434 -6.9100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669844142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:54 Heat of formation + Delta-G solvation = -2.743231 kcal Electronic energy + Delta-G solvation = -24413.326070 eV Core-core repulsion = 20909.199332 eV Total energy + Delta-G solvation = -3504.126738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88749 -38.80631 -37.54676 -36.08078 -33.87050 -32.56954 -32.23169 -30.87788 -29.73859 -26.98501 -26.18050 -25.57427 -24.65706 -22.75025 -21.78790 -20.51162 -19.82685 -17.89022 -17.31440 -16.71908 -16.55759 -15.78331 -15.57192 -15.14061 -14.79939 -14.39350 -14.19575 -13.70480 -13.57849 -13.30386 -13.21013 -13.12565 -12.77643 -12.68118 -12.27391 -12.09384 -11.99264 -11.81093 -11.38509 -11.04859 -10.81121 -10.73927 -10.52861 -10.18749 -9.92780 -9.82329 -9.61663 -9.42357 -8.77857 -8.55159 -8.23194 -7.77864 -6.71941 -5.70999 -3.16117 1.06568 1.43842 2.41044 3.41572 3.49019 3.50222 3.50924 3.84383 4.19549 4.29970 4.39498 4.54236 4.67642 4.80937 4.97214 5.09576 5.21191 5.38739 5.52333 5.52691 5.69566 5.79863 5.86429 5.95092 6.07865 6.15615 6.31442 6.45381 6.52772 6.54507 6.61863 6.70129 6.81260 6.99925 7.25555 7.36142 7.60297 7.83458 8.30587 8.41682 8.41938 9.10363 9.25523 9.87661 10.35486 11.34771 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.005470 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.687017 B = 5118.005199 C = 5556.845484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.163 3.837 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.905 5.905 11 Si 0.904 3.096 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.703 5.703 16 C 0.575 3.425 17 O -0.522 6.522 18 C -0.282 4.282 19 C 0.169 3.831 20 N -0.477 5.477 21 C 0.056 3.944 22 C 0.126 3.874 23 C -0.272 4.272 24 C 0.405 3.595 25 O -0.481 6.481 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.042 0.958 33 H -0.008 1.008 34 H 0.250 0.750 35 H 0.385 0.615 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -14.563 -9.945 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.550 5.550 11 Si 0.735 3.265 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.204 1.204 15 N -0.355 5.355 16 C 0.361 3.639 17 O -0.398 6.398 18 C -0.292 4.292 19 C 0.039 3.961 20 N -0.164 5.164 21 C -0.086 4.086 22 C 0.002 3.998 23 C -0.296 4.296 24 C 0.291 3.709 25 O -0.362 6.362 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.011 0.989 34 H 0.060 0.940 35 H 0.219 0.781 36 H 0.181 0.819 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.178 0.822 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.165 -13.257 -10.084 17.761 hybrid contribution 1.115 -0.018 0.374 1.176 sum -5.050 -13.275 -9.710 17.205 Atomic orbital electron populations 1.22156 0.97023 1.00871 1.01742 1.21808 0.91558 0.99279 0.86154 0.89604 1.21205 0.85705 0.97091 0.94503 1.43858 0.99097 1.20794 1.68112 1.20834 0.94465 0.85082 0.97841 1.19177 0.94488 1.10592 1.14154 0.91379 1.25015 0.98955 0.99038 0.96299 1.70019 1.17136 1.45825 1.22032 0.86253 0.80944 0.80522 0.78818 1.21645 1.21813 1.20447 1.45678 1.67444 1.12998 1.09337 1.17354 0.77976 0.86482 0.82092 1.90796 1.49524 1.14920 1.84556 1.22645 1.14297 0.93450 0.98848 1.22190 0.90584 0.93539 0.89786 1.42590 1.54433 1.11517 1.07861 1.22457 1.03260 0.77901 1.04941 1.21617 0.96030 0.94370 0.87784 1.22450 1.10734 0.94225 1.02206 1.18206 0.77819 0.88552 0.86343 1.90806 1.43873 1.15822 1.85722 0.92189 0.92851 0.93391 0.92290 0.94170 0.95252 0.93888 0.98945 0.93965 0.78100 0.81911 0.89969 0.89073 0.89268 0.82153 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.48 37.15 0.35 -2.20 16 2 C 0.12 2.36 2.88 -67.93 -0.20 2.16 16 3 H 0.09 2.09 7.58 -51.93 -0.39 1.70 16 4 C 0.14 2.79 5.33 -4.04 -0.02 2.77 16 5 N -0.60 -14.25 2.78 -181.12 -0.50 -14.75 16 6 C 0.16 3.61 7.60 59.85 0.46 4.07 16 7 C -0.25 -6.96 9.66 -15.06 -0.15 -7.10 16 8 H 0.07 1.85 7.85 -52.49 -0.41 1.43 16 9 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 10 N -0.91 -26.15 10.66 55.49 0.59 -25.56 16 11 Si 0.90 22.50 29.57 -169.99 -5.03 17.47 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 N -0.70 -13.49 4.37 -54.93 -0.24 -13.73 16 16 C 0.57 12.68 7.74 -12.58 -0.10 12.58 16 17 O -0.52 -14.06 15.24 -14.76 -0.22 -14.28 16 18 C -0.28 -5.19 6.05 -102.72 -0.62 -5.81 16 19 C 0.17 2.13 9.79 -16.54 -0.16 1.97 16 20 N -0.48 -4.30 2.97 -124.40 -0.37 -4.67 16 21 C 0.06 0.23 10.53 59.85 0.63 0.86 16 22 C 0.13 1.14 10.17 -17.09 -0.17 0.97 16 23 C -0.27 -3.64 10.01 -39.47 -0.40 -4.03 16 24 C 0.41 7.93 6.96 -34.68 -0.24 7.69 16 25 O -0.48 -11.87 16.41 -15.18 -0.25 -12.12 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 31 H 0.03 0.69 6.90 -51.93 -0.36 0.33 16 32 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16 33 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.39 6.30 5.25 -40.82 -0.21 6.09 16 36 H 0.16 1.67 6.35 -52.48 -0.33 1.34 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.25 7.96 -51.93 -0.41 -0.16 16 39 H 0.09 0.13 7.96 -51.93 -0.41 -0.28 16 40 H 0.16 0.68 7.97 -52.49 -0.42 0.26 16 41 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -40.28 342.45 -7.38 -47.66 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.82 Total: 0.83 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: -0.71 Total: 13.98 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.52 Total: -58.70 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.47 Total: -26.40 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -40.28 -7.38 -47.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669844142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.916 kcal (2) G-P(sol) polarization free energy of solvation -40.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds