Wall clock time and date at job start Tue Mar 31 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.53002 * 109.47232 * 119.99235 * 2 1 3 5 5 N 1.46494 * 109.47312 * 174.99911 * 4 2 1 6 6 C 1.46500 * 120.00368 * 270.00429 * 5 4 2 7 7 C 1.36937 * 119.99765 * 90.00040 * 5 4 2 8 8 H 1.08001 * 119.99932 * 23.67598 * 7 5 4 9 9 C 1.38812 * 119.99961 * 203.66530 * 7 5 4 10 10 N 1.31628 * 120.00013 * 11.23808 * 9 7 5 11 11 Si 1.86801 * 120.00144 * 191.23055 * 9 7 5 12 12 H 1.48502 * 109.46827 * 90.00511 * 11 9 7 13 13 H 1.48496 * 109.47292 * 210.00441 * 11 9 7 14 14 H 1.48502 * 109.47197 * 330.00701 * 11 9 7 15 15 N 1.46500 * 109.47295 * 239.99519 * 2 1 3 16 16 C 1.34780 * 119.99997 * 84.99955 * 15 2 1 17 17 O 1.21621 * 119.99642 * 359.97438 * 16 15 2 18 18 C 1.47286 * 120.00060 * 180.02562 * 16 15 2 19 19 C 1.37983 * 120.87973 * 359.97438 * 18 16 15 20 20 N 1.34353 * 120.37128 * 179.97438 * 19 18 16 21 21 C 1.46499 * 118.80659 * 180.02562 * 20 19 18 22 22 C 1.35575 * 122.38840 * 0.02562 * 20 19 18 23 23 C 1.34872 * 121.80076 * 0.02562 * 22 20 19 24 24 C 1.41669 * 119.33695 * 0.25289 * 23 22 20 25 25 O 1.22087 * 121.06765 * 179.72493 * 24 23 22 26 26 H 1.09003 * 109.47442 * 300.00331 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00245 * 1 2 3 28 28 H 1.08998 * 109.47550 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47281 * 295.00560 * 4 2 1 30 30 H 1.09003 * 109.46653 * 55.00526 * 4 2 1 31 31 H 1.09003 * 109.47212 * 94.61709 * 6 5 4 32 32 H 1.09001 * 109.47187 * 214.61921 * 6 5 4 33 33 H 1.08999 * 109.46778 * 334.61658 * 6 5 4 34 34 H 0.97002 * 120.00001 * 179.97438 * 10 9 7 35 35 H 0.96997 * 120.00280 * 265.00306 * 15 2 1 36 36 H 1.08004 * 119.82099 * 0.02562 * 19 18 16 37 37 H 1.08998 * 109.46928 * 269.98075 * 21 20 19 38 38 H 1.09005 * 109.46736 * 29.97861 * 21 20 19 39 39 H 1.08997 * 109.47269 * 149.97626 * 21 20 19 40 40 H 1.07995 * 119.10224 * 180.02562 * 22 20 19 41 41 H 1.08000 * 120.32861 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.4999 -0.8262 1.1907 6 6 4.1258 -1.9918 0.5614 7 6 4.2797 0.1651 1.7240 8 1 3.8835 0.8067 2.4971 9 6 5.5795 0.3450 1.2711 10 7 5.9914 -0.2793 0.1880 11 14 6.7439 1.4735 2.1986 12 1 7.4753 0.6920 3.2280 13 1 7.7156 2.0714 1.2481 14 1 5.9666 2.5539 2.8570 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8573 1.1615 -2.4119 18 6 2.6375 -0.7130 -3.5598 19 6 2.9709 -2.0513 -3.5183 20 7 3.4168 -2.6748 -4.6217 21 6 3.7604 -4.0965 -4.5389 22 6 3.5603 -2.0361 -5.8089 23 6 3.2626 -0.7286 -5.9531 24 6 2.7915 0.0034 -4.8353 25 8 2.5173 1.1894 -4.9290 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7515 -0.1581 2.1370 30 1 1.6054 -1.7197 1.2953 31 1 4.3546 -1.7637 -0.4796 32 1 5.0463 -2.2396 1.0899 33 1 3.4420 -2.8395 0.6058 34 1 6.8996 -0.1532 -0.1287 35 1 2.2490 -1.6318 -1.1525 36 1 2.8721 -2.6009 -2.5938 37 1 4.8111 -4.2012 -4.2687 38 1 3.1407 -4.5765 -3.7814 39 1 3.5848 -4.5696 -5.5051 40 1 3.9231 -2.5893 -6.6625 41 1 3.3863 -0.2434 -6.9100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669844142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:54 Heat of formation + Delta-G solvation = -32.643138 kcal Electronic energy + Delta-G solvation = -24414.622628 eV Core-core repulsion = 20909.199332 eV Total energy + Delta-G solvation = -3505.423295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96966 -40.33025 -38.90586 -37.85154 -35.68288 -33.83069 -33.33611 -32.71673 -31.18952 -27.95747 -27.65491 -27.38582 -25.84801 -23.97236 -23.41664 -22.04156 -21.44591 -19.07477 -18.80430 -18.31772 -17.72706 -16.93989 -16.78913 -16.68787 -16.50140 -15.79377 -15.53738 -15.34559 -15.15260 -14.83266 -14.59751 -14.45150 -14.15555 -13.74719 -13.47347 -13.38161 -13.16650 -13.07583 -12.82774 -12.66079 -12.62617 -12.54786 -12.27093 -12.03023 -11.83267 -11.68501 -11.02633 -10.67441 -10.62032 -10.25430 -9.89245 -8.98697 -8.68481 -7.82442 -5.26618 -0.10167 0.41764 1.40871 1.44435 1.50562 1.59963 2.03909 2.39034 2.51286 2.90670 3.31884 3.34615 3.72371 3.77816 3.83653 3.96790 4.16801 4.37485 4.44077 4.47503 4.56504 4.60453 4.68911 4.78494 4.83320 4.86748 4.92694 4.93314 5.02148 5.21562 5.37249 5.40912 5.42710 5.66780 5.74308 5.78165 5.83039 5.85360 6.36411 6.80055 7.13971 7.20704 7.54035 7.93269 8.31356 9.19602 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.005470 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.687017 B = 5118.005199 C = 5556.845484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 H 0.024 0.976 4 C 0.145 3.855 5 N -0.611 5.611 6 C 0.172 3.828 7 C -0.258 4.258 8 H 0.063 0.937 9 C -0.049 4.049 10 N -0.926 5.926 11 Si 0.955 3.045 12 H -0.278 1.278 13 H -0.304 1.304 14 H -0.277 1.277 15 N -0.690 5.690 16 C 0.563 3.437 17 O -0.593 6.593 18 C -0.349 4.349 19 C 0.216 3.784 20 N -0.458 5.458 21 C 0.041 3.959 22 C 0.169 3.831 23 C -0.304 4.304 24 C 0.376 3.624 25 O -0.574 6.574 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.045 0.955 34 H 0.243 0.757 35 H 0.401 0.599 36 H 0.195 0.805 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.231 0.769 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -19.967 -10.295 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.043 0.957 4 C 0.018 3.982 5 N -0.334 5.334 6 C 0.027 3.973 7 C -0.389 4.389 8 H 0.081 0.919 9 C -0.245 4.245 10 N -0.573 5.573 11 Si 0.785 3.215 12 H -0.204 1.204 13 H -0.231 1.231 14 H -0.203 1.203 15 N -0.342 5.342 16 C 0.353 3.647 17 O -0.474 6.474 18 C -0.360 4.360 19 C 0.082 3.918 20 N -0.141 5.141 21 C -0.098 4.098 22 C 0.043 3.957 23 C -0.327 4.327 24 C 0.269 3.731 25 O -0.463 6.463 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.238 0.762 36 H 0.212 0.788 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.248 0.752 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.135 -18.796 -10.418 22.349 hybrid contribution 1.119 1.371 0.479 1.834 sum -5.015 -17.426 -9.939 20.678 Atomic orbital electron populations 1.22016 0.93858 1.03064 1.01428 1.21679 0.93990 0.96229 0.86697 0.95728 1.21373 0.83340 0.99468 0.93991 1.44102 1.00785 1.20563 1.67911 1.20695 0.94489 0.86051 0.96063 1.19444 0.94947 1.10784 1.13718 0.91894 1.25643 1.00530 1.00899 0.97411 1.70156 1.16783 1.47215 1.23158 0.85435 0.79124 0.79185 0.77734 1.20442 1.23082 1.20271 1.45527 1.66770 1.13470 1.08388 1.18051 0.77007 0.86010 0.83675 1.90738 1.52859 1.18066 1.85780 1.22326 1.20062 0.96171 0.97417 1.22438 0.86231 0.91334 0.91842 1.43308 1.50304 1.13756 1.06733 1.23044 1.04379 0.73948 1.08407 1.22499 0.91195 0.92862 0.89105 1.22360 1.13383 0.96163 1.00832 1.19124 0.77161 0.88184 0.88594 1.90742 1.49239 1.19147 1.87150 0.90496 0.95253 0.89749 0.91997 0.89609 0.96934 0.96959 0.93627 0.94822 0.76226 0.78829 0.88858 0.86940 0.85124 0.75247 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.48 71.98 0.68 -3.87 16 2 C 0.12 4.87 2.88 44.99 0.13 5.00 16 3 H 0.02 1.28 7.58 -2.39 -0.02 1.26 16 4 C 0.15 5.38 5.33 86.38 0.46 5.84 16 5 N -0.61 -28.63 2.78 -726.93 -2.02 -30.65 16 6 C 0.17 7.27 7.60 127.77 0.97 8.24 16 7 C -0.26 -14.25 9.66 84.03 0.81 -13.44 16 8 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 9 C -0.05 -2.82 5.13 84.86 0.44 -2.38 16 10 N -0.93 -54.53 10.66 21.65 0.23 -54.30 16 11 Si 0.96 47.23 29.57 68.60 2.03 49.26 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 15 N -0.69 -26.67 4.37 -445.93 -1.95 -28.62 16 16 C 0.56 26.55 7.74 86.62 0.67 27.22 16 17 O -0.59 -35.44 15.24 15.04 0.23 -35.21 16 18 C -0.35 -13.34 6.05 -18.63 -0.11 -13.46 16 19 C 0.22 4.85 9.79 84.25 0.83 5.67 16 20 N -0.46 -5.79 2.97 -547.48 -1.63 -7.42 16 21 C 0.04 0.02 10.53 127.77 1.35 1.36 16 22 C 0.17 2.22 10.17 83.34 0.85 3.07 16 23 C -0.30 -7.99 10.01 22.34 0.22 -7.76 16 24 C 0.38 15.88 6.96 25.44 0.18 16.05 16 25 O -0.57 -31.86 16.41 13.54 0.22 -31.63 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 30 H 0.09 2.45 7.86 -2.39 -0.02 2.43 16 31 H 0.01 0.57 6.90 -2.39 -0.02 0.55 16 32 H 0.01 0.57 7.30 -2.39 -0.02 0.55 16 33 H 0.05 1.43 7.84 -2.39 -0.02 1.41 16 34 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.40 12.25 5.25 -92.71 -0.49 11.76 16 36 H 0.20 3.07 6.35 -2.91 -0.02 3.05 16 37 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.11 -0.26 7.96 -2.38 -0.02 -0.28 16 39 H 0.13 -0.82 7.96 -2.39 -0.02 -0.83 16 40 H 0.23 -0.01 7.97 -2.91 -0.02 -0.03 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -104.28 342.45 5.14 -99.14 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.55 Total: 7.90 kcal Atomic # 6 Polarization: 24.07 SS G_CDS: 7.47 Total: 31.54 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.36 Total: -120.99 kcal Atomic # 8 Polarization: -67.30 SS G_CDS: 0.45 Total: -66.85 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -104.28 5.14 -99.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669844142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.496 kcal (2) G-P(sol) polarization free energy of solvation -104.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds