Wall clock time and date at job start Tue Mar 31 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28716 * 126.03852 * 2 1 4 4 N 1.28506 * 110.63682 * 180.02562 * 3 2 1 5 5 C 1.33316 * 109.44310 * 0.02562 * 4 3 2 6 6 C 1.37003 * 106.37236 * 359.73952 * 5 4 3 7 7 C 1.47233 * 127.19112 * 180.27098 * 6 5 4 8 8 O 1.21618 * 120.00060 * 186.56057 * 7 6 5 9 9 N 1.34774 * 120.00186 * 6.56532 * 7 6 5 10 10 C 1.47486 * 127.03314 * 5.82481 * 9 7 6 11 11 C 1.54004 * 107.08386 * 154.51806 * 10 9 7 12 12 C 1.54613 * 105.04530 * 1.30523 * 11 10 9 13 13 C 1.52992 * 110.74038 * 263.51249 * 12 11 10 14 14 C 1.53000 * 110.73673 * 140.18499 * 12 11 10 15 15 N 1.46504 * 109.47083 * 180.02562 * 14 12 11 16 16 C 1.36929 * 120.00112 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00501 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00259 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99474 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00394 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47461 * 119.99420 * 20 18 16 23 23 H 1.48502 * 109.47204 * 239.99894 * 20 18 16 24 24 C 1.48116 * 127.03628 * 185.51313 * 9 7 6 25 25 H 1.08999 * 109.46956 * 85.18644 * 1 2 3 26 26 H 1.09004 * 109.46822 * 325.18673 * 1 2 3 27 27 H 1.08998 * 109.47072 * 205.19140 * 1 2 3 28 28 H 1.08005 * 126.81511 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.91563 * 273.87982 * 10 9 7 30 30 H 1.08999 * 109.91162 * 34.96575 * 10 9 7 31 31 H 1.09000 * 110.32562 * 120.20022 * 11 10 9 32 32 H 1.09002 * 110.32790 * 242.30700 * 11 10 9 33 33 H 1.09001 * 109.47709 * 60.00198 * 13 12 11 34 34 H 1.09002 * 109.47145 * 180.02562 * 13 12 11 35 35 H 1.09005 * 109.47340 * 299.99972 * 13 12 11 36 36 H 1.09002 * 109.47442 * 299.99897 * 14 12 11 37 37 H 1.08996 * 109.47264 * 60.00226 * 14 12 11 38 38 H 0.97001 * 119.99740 * 359.97438 * 15 14 12 39 39 H 0.97006 * 119.99589 * 180.02562 * 19 18 16 40 40 H 1.09005 * 110.66284 * 337.76352 * 24 9 7 41 41 H 1.09002 * 110.66361 * 100.88474 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4612 0.6995 -0.0005 5 6 3.5552 -0.6303 -0.0015 6 6 2.2712 -1.1082 0.0045 7 6 1.8462 -2.5178 0.0115 8 8 0.6685 -2.7985 -0.1040 9 7 2.7623 -3.4972 0.1461 10 6 4.2034 -3.3348 0.4145 11 6 4.6836 -4.6258 1.1033 12 6 3.4331 -5.5323 1.1734 13 6 2.7521 -5.4116 2.5380 14 6 3.8015 -6.9874 0.8768 15 7 2.5985 -7.8204 0.9498 16 6 2.6836 -9.1675 0.7198 17 1 3.6373 -9.6161 0.4841 18 6 1.5438 -9.9569 0.7895 19 7 0.3815 -9.4104 1.0772 20 14 1.6596 -11.7945 0.4750 21 1 3.0678 -12.1574 0.1737 22 1 1.2049 -12.5328 1.6806 23 1 0.7983 -12.1543 -0.6800 24 6 2.5266 -4.9570 0.0609 25 1 -0.3633 0.0862 -1.0240 26 1 -0.3633 0.8438 0.5867 27 1 -0.3633 -0.9299 0.4374 28 1 4.4633 -1.2150 -0.0025 29 1 4.7418 -3.1915 -0.5224 30 1 4.3647 -2.4788 1.0699 31 1 5.4645 -5.1029 0.5111 32 1 5.0506 -4.4061 2.1059 33 1 2.4470 -4.3780 2.7018 34 1 1.8751 -6.0583 2.5650 35 1 3.4493 -5.7128 3.3200 36 1 4.2311 -7.0571 -0.1226 37 1 4.5293 -7.3346 1.6101 38 1 1.7419 -7.4176 1.1619 39 1 -0.4149 -9.9621 1.1263 40 1 1.4805 -5.1900 0.2596 41 1 2.8284 -5.3391 -0.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671728691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:57 Heat of formation + Delta-G solvation = 90.012346 kcal Electronic energy + Delta-G solvation = -23870.013859 eV Core-core repulsion = 20402.202055 eV Total energy + Delta-G solvation = -3467.811803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.54234 -40.22749 -38.12971 -35.24113 -34.65901 -32.99342 -31.54919 -30.52306 -29.34068 -28.33053 -26.81232 -25.80216 -24.35789 -23.05491 -22.47436 -22.00447 -19.97850 -18.95984 -17.66115 -17.17285 -17.12100 -16.81420 -15.99841 -15.74197 -14.84364 -14.62284 -14.37330 -13.97527 -13.78712 -13.58135 -13.47118 -13.24185 -13.00924 -12.73577 -12.41709 -12.23075 -12.13363 -11.68047 -11.53063 -11.38174 -11.04861 -10.87538 -10.61078 -10.56732 -10.46900 -10.35737 -10.21656 -9.97557 -9.73576 -9.67139 -8.92331 -8.80181 -6.95634 -5.79162 -3.08227 0.70498 1.81128 2.06138 2.78021 2.88031 3.41744 3.47374 3.49690 3.95787 4.14912 4.47216 4.53585 4.53871 4.63682 4.74215 4.78272 4.85455 5.11983 5.18584 5.27038 5.35847 5.39687 5.55626 5.62933 5.67200 5.77444 5.88963 5.91691 6.00517 6.04493 6.10356 6.17186 6.31756 6.41020 6.60083 6.69777 6.77689 7.29562 7.67966 7.80300 8.09291 8.39247 9.50891 10.07391 10.41571 11.43486 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.003426 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.693144 B = 8169.787536 C = 8799.175289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.256 5.256 3 N -0.063 5.063 4 N -0.275 5.275 5 C -0.010 4.010 6 C -0.061 4.061 7 C 0.609 3.391 8 O -0.533 6.533 9 N -0.601 5.601 10 C 0.087 3.913 11 C -0.124 4.124 12 C -0.079 4.079 13 C -0.131 4.131 14 C 0.169 3.831 15 N -0.731 5.731 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.122 3.878 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.205 0.795 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 17.639 -0.783 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.052 5.052 3 N -0.044 5.044 4 N -0.138 5.138 5 C -0.170 4.170 6 C -0.195 4.195 7 C 0.395 3.605 8 O -0.410 6.410 9 N -0.334 5.334 10 C -0.036 4.036 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.188 4.188 14 C 0.041 3.959 15 N -0.376 5.376 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.002 3.998 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.451 18.948 -0.905 19.737 hybrid contribution -0.390 -2.025 -0.135 2.067 sum 5.061 16.923 -1.040 17.694 Atomic orbital electron populations 1.22602 0.71261 1.07031 1.05701 1.47649 1.09955 1.03389 1.44212 1.78255 0.96772 1.11554 1.17813 1.74898 1.09176 1.12637 1.17088 1.24383 0.97196 0.91886 1.03561 1.21949 0.91522 0.90846 1.15213 1.16165 0.84811 0.81854 0.77655 1.90832 1.16069 1.83104 1.50995 1.48423 1.08554 1.07251 1.69147 1.22551 0.80809 0.99767 1.00432 1.22603 0.98118 0.94007 1.01512 1.21812 0.94224 0.96294 0.95666 1.21718 1.01456 1.00764 0.94848 1.20632 0.91037 0.86455 0.97787 1.42416 1.05147 1.04916 1.85162 1.19247 0.94026 0.83988 1.39939 0.91124 1.24740 0.95493 0.98059 1.02580 1.69669 0.98311 1.34562 1.55431 0.86133 0.77182 0.85558 0.77384 1.20572 1.21908 1.21893 1.22655 1.02288 0.75715 0.99190 0.88511 0.88014 0.86316 0.77851 0.90636 0.90148 0.89804 0.90184 0.93772 0.91013 0.92535 0.95964 0.95718 0.78041 0.93525 0.88784 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 11.00 59.85 0.66 1.28 16 2 N -0.26 -3.01 3.79 -64.12 -0.24 -3.25 16 3 N -0.06 -0.82 13.14 60.35 0.79 -0.02 16 4 N -0.28 -3.59 12.35 30.47 0.38 -3.21 16 5 C -0.01 -0.11 10.41 -17.36 -0.18 -0.29 16 6 C -0.06 -0.75 6.92 -82.33 -0.57 -1.32 16 7 C 0.61 8.45 7.86 -12.61 -0.10 8.35 16 8 O -0.53 -8.88 15.02 5.26 0.08 -8.80 16 9 N -0.60 -7.57 3.19 -171.31 -0.55 -8.12 16 10 C 0.09 0.79 5.25 -2.98 -0.02 0.77 16 11 C -0.12 -1.24 6.09 -25.36 -0.15 -1.39 16 12 C -0.08 -1.11 0.64 -152.82 -0.10 -1.21 16 13 C -0.13 -1.96 8.31 37.15 0.31 -1.65 16 14 C 0.17 3.04 5.11 -4.04 -0.02 3.02 16 15 N -0.73 -17.33 5.16 -59.91 -0.31 -17.64 16 16 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.12 1.83 5.68 -2.31 -0.01 1.81 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.12 1.12 6.32 -51.93 -0.33 0.79 16 28 H 0.21 1.55 5.07 -52.48 -0.27 1.28 16 29 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.08 0.60 5.89 -51.93 -0.31 0.30 16 31 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 32 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.07 1.30 6.69 -51.93 -0.35 0.95 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.38 9.67 6.21 -40.82 -0.25 9.42 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.09 1.68 7.71 -51.93 -0.40 1.28 16 41 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -33.08 333.71 -5.17 -38.25 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.62 Total: 5.39 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.43 Total: 2.29 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.79 Total: -59.13 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.08 -5.17 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671728691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.265 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds