Wall clock time and date at job start Tue Mar 31 2020 03:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28716 * 126.03852 * 2 1 4 4 N 1.28506 * 110.63682 * 180.02562 * 3 2 1 5 5 C 1.33316 * 109.44310 * 0.02562 * 4 3 2 6 6 C 1.37003 * 106.37236 * 359.73952 * 5 4 3 7 7 C 1.47233 * 127.19112 * 180.27098 * 6 5 4 8 8 O 1.21618 * 120.00060 * 186.56057 * 7 6 5 9 9 N 1.34774 * 120.00186 * 6.56532 * 7 6 5 10 10 C 1.47486 * 127.03314 * 5.82481 * 9 7 6 11 11 C 1.54004 * 107.08386 * 154.51806 * 10 9 7 12 12 C 1.54613 * 105.04530 * 1.30523 * 11 10 9 13 13 C 1.52992 * 110.74038 * 263.51249 * 12 11 10 14 14 C 1.53000 * 110.73673 * 140.18499 * 12 11 10 15 15 N 1.46504 * 109.47083 * 180.02562 * 14 12 11 16 16 C 1.36929 * 120.00112 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00501 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00259 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99474 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00394 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47461 * 119.99420 * 20 18 16 23 23 H 1.48502 * 109.47204 * 239.99894 * 20 18 16 24 24 C 1.48116 * 127.03628 * 185.51313 * 9 7 6 25 25 H 1.08999 * 109.46956 * 85.18644 * 1 2 3 26 26 H 1.09004 * 109.46822 * 325.18673 * 1 2 3 27 27 H 1.08998 * 109.47072 * 205.19140 * 1 2 3 28 28 H 1.08005 * 126.81511 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.91563 * 273.87982 * 10 9 7 30 30 H 1.08999 * 109.91162 * 34.96575 * 10 9 7 31 31 H 1.09000 * 110.32562 * 120.20022 * 11 10 9 32 32 H 1.09002 * 110.32790 * 242.30700 * 11 10 9 33 33 H 1.09001 * 109.47709 * 60.00198 * 13 12 11 34 34 H 1.09002 * 109.47145 * 180.02562 * 13 12 11 35 35 H 1.09005 * 109.47340 * 299.99972 * 13 12 11 36 36 H 1.09002 * 109.47442 * 299.99897 * 14 12 11 37 37 H 1.08996 * 109.47264 * 60.00226 * 14 12 11 38 38 H 0.97001 * 119.99740 * 359.97438 * 15 14 12 39 39 H 0.97006 * 119.99589 * 180.02562 * 19 18 16 40 40 H 1.09005 * 110.66284 * 337.76352 * 24 9 7 41 41 H 1.09002 * 110.66361 * 100.88474 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4612 0.6995 -0.0005 5 6 3.5552 -0.6303 -0.0015 6 6 2.2712 -1.1082 0.0045 7 6 1.8462 -2.5178 0.0115 8 8 0.6685 -2.7985 -0.1040 9 7 2.7623 -3.4972 0.1461 10 6 4.2034 -3.3348 0.4145 11 6 4.6836 -4.6258 1.1033 12 6 3.4331 -5.5323 1.1734 13 6 2.7521 -5.4116 2.5380 14 6 3.8015 -6.9874 0.8768 15 7 2.5985 -7.8204 0.9498 16 6 2.6836 -9.1675 0.7198 17 1 3.6373 -9.6161 0.4841 18 6 1.5438 -9.9569 0.7895 19 7 0.3815 -9.4104 1.0772 20 14 1.6596 -11.7945 0.4750 21 1 3.0678 -12.1574 0.1737 22 1 1.2049 -12.5328 1.6806 23 1 0.7983 -12.1543 -0.6800 24 6 2.5266 -4.9570 0.0609 25 1 -0.3633 0.0862 -1.0240 26 1 -0.3633 0.8438 0.5867 27 1 -0.3633 -0.9299 0.4374 28 1 4.4633 -1.2150 -0.0025 29 1 4.7418 -3.1915 -0.5224 30 1 4.3647 -2.4788 1.0699 31 1 5.4645 -5.1029 0.5111 32 1 5.0506 -4.4061 2.1059 33 1 2.4470 -4.3780 2.7018 34 1 1.8751 -6.0583 2.5650 35 1 3.4493 -5.7128 3.3200 36 1 4.2311 -7.0571 -0.1226 37 1 4.5293 -7.3346 1.6101 38 1 1.7419 -7.4176 1.1619 39 1 -0.4149 -9.9621 1.1263 40 1 1.4805 -5.1900 0.2596 41 1 2.8284 -5.3391 -0.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671728691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:54 Heat of formation + Delta-G solvation = 66.028619 kcal Electronic energy + Delta-G solvation = -23871.053871 eV Core-core repulsion = 20402.202055 eV Total energy + Delta-G solvation = -3468.851816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -44.44547 -41.29090 -39.28056 -36.62292 -35.68184 -34.50348 -32.75594 -31.95969 -30.47804 -29.12155 -27.99678 -27.34381 -25.63951 -24.36477 -23.40729 -23.20890 -20.93045 -20.17675 -19.25877 -18.24612 -18.05555 -17.93878 -17.11659 -16.84626 -16.42082 -15.70766 -15.55574 -15.41237 -15.06538 -14.83681 -14.52689 -14.30225 -13.98741 -13.89985 -13.53712 -13.51135 -13.27355 -12.99167 -12.81786 -12.79535 -12.46371 -12.28300 -12.08221 -12.03763 -11.68720 -11.48145 -11.38912 -11.35214 -11.26304 -10.91677 -10.65989 -9.82579 -8.93923 -7.91553 -5.19134 -0.22414 0.95200 1.14954 1.49329 1.49567 1.59503 1.82506 1.87550 2.58610 3.05595 3.31266 3.42602 3.58663 3.60870 3.68257 3.87123 3.89147 4.16926 4.20964 4.28456 4.34734 4.40271 4.47688 4.58715 4.64187 4.70721 4.79880 4.85430 4.87819 4.99459 5.06939 5.10211 5.16322 5.24828 5.30803 5.39066 5.49301 5.55410 6.30033 6.30863 6.76101 7.17921 7.37587 8.15687 8.36211 9.32240 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.003426 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.693144 B = 8169.787536 C = 8799.175289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.254 5.254 3 N -0.075 5.075 4 N -0.297 5.297 5 C 0.008 3.992 6 C -0.076 4.076 7 C 0.607 3.393 8 O -0.573 6.573 9 N -0.597 5.597 10 C 0.082 3.918 11 C -0.113 4.113 12 C -0.073 4.073 13 C -0.123 4.123 14 C 0.166 3.834 15 N -0.745 5.745 16 C -0.237 4.237 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.970 3.030 21 H -0.263 1.263 22 H -0.297 1.297 23 H -0.297 1.297 24 C 0.127 3.873 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.239 0.761 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.373 0.627 39 H 0.248 0.752 40 H 0.052 0.948 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 18.654 -0.979 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.051 5.051 3 N -0.055 5.055 4 N -0.159 5.159 5 C -0.152 4.152 6 C -0.210 4.210 7 C 0.394 3.606 8 O -0.453 6.453 9 N -0.329 5.329 10 C -0.039 4.039 11 C -0.151 4.151 12 C -0.074 4.074 13 C -0.181 4.181 14 C 0.040 3.960 15 N -0.388 5.388 16 C -0.369 4.369 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.225 1.225 24 C 0.005 3.995 25 H 0.128 0.872 26 H 0.145 0.855 27 H 0.123 0.877 28 H 0.255 0.745 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.206 0.794 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.375 19.994 -1.102 21.706 hybrid contribution -1.241 -2.299 -0.074 2.613 sum 7.135 17.696 -1.176 19.116 Atomic orbital electron populations 1.22817 0.69879 1.07419 1.06980 1.47932 1.10896 1.03099 1.43205 1.78229 0.97118 1.11905 1.18296 1.74894 1.09266 1.13672 1.18046 1.24907 0.97679 0.91253 1.01377 1.21814 0.92287 0.90030 1.16865 1.16388 0.84413 0.82652 0.77118 1.90816 1.17824 1.83768 1.52863 1.48405 1.10160 1.05848 1.68471 1.22899 0.78392 1.00134 1.02518 1.22611 0.96036 0.93120 1.03357 1.21672 0.96362 0.94859 0.94500 1.21627 1.00146 1.00346 0.95949 1.20837 0.88979 0.87954 0.98251 1.42665 1.06617 1.04650 1.84885 1.19692 0.94068 0.85526 1.37613 0.90261 1.25533 0.95416 1.02229 1.03864 1.69836 0.98862 1.35770 1.57789 0.85116 0.77712 0.80685 0.76518 1.18722 1.22436 1.22502 1.22399 1.00114 0.77630 0.99398 0.87178 0.85469 0.87655 0.74536 0.87532 0.87798 0.87877 0.88213 0.92812 0.95119 0.91407 0.95017 0.95032 0.79384 0.94278 0.92904 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 11.00 127.77 1.41 2.51 16 2 N -0.25 -5.67 3.79 -356.76 -1.35 -7.03 16 3 N -0.07 -1.82 13.14 37.02 0.49 -1.33 16 4 N -0.30 -7.05 12.35 -57.50 -0.71 -7.76 16 5 C 0.01 0.16 10.41 84.18 0.88 1.03 16 6 C -0.08 -1.73 6.92 40.41 0.28 -1.45 16 7 C 0.61 16.45 7.86 86.61 0.68 17.13 16 8 O -0.57 -19.71 15.02 -4.09 -0.06 -19.77 16 9 N -0.60 -14.09 3.19 -814.15 -2.60 -16.69 16 10 C 0.08 1.12 5.25 86.53 0.45 1.58 16 11 C -0.11 -1.78 6.09 31.48 0.19 -1.59 16 12 C -0.07 -1.95 0.64 -51.09 -0.03 -1.99 16 13 C -0.12 -3.66 8.31 71.98 0.60 -3.06 16 14 C 0.17 5.78 5.11 86.38 0.44 6.22 16 15 N -0.74 -35.76 5.16 -343.44 -1.77 -37.53 16 16 C -0.24 -12.76 9.99 84.04 0.84 -11.92 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 20 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 24 C 0.13 3.77 5.68 86.61 0.49 4.26 16 25 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.10 2.04 6.32 -2.39 -0.02 2.03 16 28 H 0.24 2.45 5.07 -2.91 -0.01 2.43 16 29 H 0.11 0.92 7.88 -2.38 -0.02 0.90 16 30 H 0.10 1.01 5.89 -2.39 -0.01 1.00 16 31 H 0.10 1.31 7.85 -2.39 -0.02 1.29 16 32 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 33 H 0.05 1.46 8.07 -2.39 -0.02 1.44 16 34 H 0.03 1.15 6.69 -2.39 -0.02 1.13 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.37 19.59 6.21 -92.71 -0.58 19.02 16 39 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 40 H 0.05 2.01 7.71 -2.38 -0.02 1.99 16 41 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 Total: -1.00 -74.33 333.71 3.48 -70.85 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.48 Total: 22.01 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.69 Total: 8.75 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -5.66 Total: -129.56 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.33 3.48 -70.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671728691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.879 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds