Wall clock time and date at job start Tue Mar 31 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28711 * 126.03646 * 2 1 4 4 N 1.28519 * 110.63790 * 180.02562 * 3 2 1 5 5 C 1.33321 * 109.43610 * 359.75906 * 4 3 2 6 6 C 1.37005 * 106.37373 * 0.37481 * 5 4 3 7 7 C 1.47234 * 127.18645 * 179.90342 * 6 5 4 8 8 O 1.21623 * 119.99846 * 172.19374 * 7 6 5 9 9 N 1.34777 * 119.99952 * 352.19577 * 7 6 5 10 10 C 1.48144 * 127.84024 * 353.44045 * 9 7 6 11 11 C 1.54386 * 104.61668 * 219.58370 * 10 9 7 12 12 C 1.54283 * 104.96406 * 336.13693 * 11 10 9 13 13 C 1.52999 * 110.34747 * 118.97406 * 12 11 10 14 14 C 1.52995 * 110.34135 * 241.12959 * 12 11 10 15 15 N 1.46502 * 109.47318 * 179.97438 * 14 12 11 16 16 C 1.36934 * 120.00253 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00451 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99923 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00258 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47066 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47059 * 120.00456 * 20 18 16 23 23 H 1.48498 * 109.47099 * 240.00280 * 20 18 16 24 24 C 1.48147 * 127.83283 * 173.43972 * 9 7 6 25 25 H 1.08999 * 109.47015 * 264.98929 * 1 2 3 26 26 H 1.09006 * 109.47095 * 24.98670 * 1 2 3 27 27 H 1.09000 * 109.47288 * 144.98926 * 1 2 3 28 28 H 1.08001 * 126.81257 * 180.25639 * 5 4 3 29 29 H 1.08999 * 110.40690 * 100.80308 * 10 9 7 30 30 H 1.09000 * 110.40730 * 338.37210 * 10 9 7 31 31 H 1.09001 * 110.34027 * 95.00372 * 11 10 9 32 32 H 1.08997 * 110.34140 * 217.15321 * 11 10 9 33 33 H 1.09002 * 109.46889 * 59.99924 * 13 12 11 34 34 H 1.08991 * 109.47385 * 180.02562 * 13 12 11 35 35 H 1.09007 * 109.46866 * 299.99874 * 13 12 11 36 36 H 1.09006 * 109.47218 * 299.99282 * 14 12 11 37 37 H 1.08998 * 109.47436 * 59.99786 * 14 12 11 38 38 H 0.97001 * 120.00094 * 359.97438 * 15 14 12 39 39 H 0.97004 * 120.00227 * 179.97438 * 19 18 16 40 40 H 1.09004 * 110.41012 * 21.63160 * 24 9 7 41 41 H 1.08992 * 110.51031 * 259.24589 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6996 -0.0005 5 6 3.5551 -0.6303 0.0044 6 6 2.2711 -1.1082 -0.0005 7 6 1.8462 -2.5179 0.0000 8 8 0.6709 -2.7987 0.1384 9 7 2.7596 -3.4971 -0.1527 10 6 4.2008 -3.3549 -0.4647 11 6 4.5002 -4.5018 -1.4539 12 6 3.4118 -5.5599 -1.1783 13 6 2.5638 -5.7896 -2.4309 14 6 4.0503 -6.8731 -0.7214 15 7 3.0012 -7.8629 -0.4647 16 6 3.3360 -9.1219 -0.0431 17 1 4.3735 -9.3852 0.1007 18 6 2.3419 -10.0596 0.2006 19 7 1.0774 -9.7387 0.0259 20 14 2.7986 -11.7769 0.7765 21 1 4.2751 -11.8829 0.8952 22 1 2.1762 -12.0373 2.0995 23 1 2.3076 -12.7756 -0.2066 24 6 2.5500 -4.9598 -0.0465 25 1 -0.3633 -0.0898 1.0237 26 1 -0.3633 0.9315 -0.4341 27 1 -0.3634 -0.8417 -0.5896 28 1 4.4632 -1.2150 0.0091 29 1 4.7984 -3.4676 0.4399 30 1 4.3951 -2.3895 -0.9319 31 1 4.4295 -4.1442 -2.4812 32 1 5.4905 -4.9162 -1.2650 33 1 3.2019 -6.1390 -3.2426 34 1 1.8002 -6.5382 -2.2205 35 1 2.0849 -4.8545 -2.7219 36 1 4.7169 -7.2434 -1.5003 37 1 4.6191 -6.7019 0.1925 38 1 2.0693 -7.6264 -0.5935 39 1 0.3827 -10.3941 0.1958 40 1 1.4989 -5.2052 -0.1983 41 1 2.8885 -5.3247 0.9231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671728692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:02 Heat of formation + Delta-G solvation = 92.843345 kcal Electronic energy + Delta-G solvation = -23838.490592 eV Core-core repulsion = 20370.801550 eV Total energy + Delta-G solvation = -3467.689042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.55142 -40.17517 -38.13308 -35.24379 -34.66285 -33.00581 -31.57222 -30.48838 -29.37786 -28.34771 -26.74148 -25.76961 -24.33310 -23.07210 -22.52491 -22.04773 -20.00197 -18.91075 -17.64826 -17.24591 -17.10818 -16.80858 -15.92055 -15.85249 -14.86725 -14.63314 -14.19764 -13.97850 -13.76267 -13.61022 -13.50613 -13.26562 -13.00349 -12.63482 -12.45820 -12.32780 -12.09177 -11.65333 -11.41030 -11.39917 -11.04464 -10.88130 -10.63301 -10.58460 -10.47380 -10.31741 -10.23181 -9.96194 -9.74574 -9.67011 -8.92615 -8.82159 -6.96008 -5.79582 -3.08646 0.69865 1.79888 2.05036 2.77118 2.87721 3.41461 3.47155 3.49441 3.95354 4.12855 4.44989 4.53380 4.56001 4.61529 4.74535 4.78159 4.91090 5.10017 5.22809 5.27415 5.33691 5.38498 5.55577 5.62051 5.67879 5.76068 5.89613 5.91577 6.03738 6.04595 6.09458 6.14381 6.33990 6.45124 6.60368 6.70508 6.77092 7.31315 7.67672 7.80151 8.08463 8.38869 9.50546 10.07076 10.41229 11.43075 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.003371 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.312021 B = 8304.056578 C = 8783.161968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.256 5.256 3 N -0.063 5.063 4 N -0.275 5.275 5 C -0.011 4.011 6 C -0.060 4.060 7 C 0.611 3.389 8 O -0.534 6.534 9 N -0.604 5.604 10 C 0.083 3.917 11 C -0.124 4.124 12 C -0.080 4.080 13 C -0.132 4.132 14 C 0.167 3.833 15 N -0.731 5.731 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.123 3.877 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.207 0.793 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.090 0.910 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 18.355 -2.444 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.053 5.053 3 N -0.044 5.044 4 N -0.137 5.137 5 C -0.171 4.171 6 C -0.195 4.195 7 C 0.397 3.603 8 O -0.412 6.412 9 N -0.337 5.337 10 C -0.040 4.040 11 C -0.163 4.163 12 C -0.081 4.081 13 C -0.189 4.189 14 C 0.039 3.961 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.002 3.998 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.223 0.777 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.234 19.688 -2.300 20.084 hybrid contribution -0.235 -2.084 0.333 2.123 sum 2.999 17.604 -1.967 17.965 Atomic orbital electron populations 1.22517 0.71269 1.06298 1.06017 1.47644 1.09950 1.03412 1.44247 1.78264 0.96786 1.11500 1.17839 1.74908 1.09154 1.12632 1.17053 1.24428 0.97218 0.91873 1.03630 1.21953 0.91519 0.90818 1.15166 1.16142 0.84724 0.81803 0.77645 1.90842 1.16204 1.83179 1.50927 1.48616 1.09390 1.07260 1.68394 1.22937 0.81101 1.00294 0.99665 1.22636 0.99753 0.94701 0.99191 1.21699 0.95138 0.95689 0.95558 1.21792 1.00005 1.01104 0.95995 1.20729 0.91758 0.86610 0.96963 1.42419 1.04420 1.09631 1.81193 1.19246 0.92616 0.88327 1.37004 0.91129 1.24736 0.95252 0.98413 1.02455 1.69661 0.98525 1.34420 1.55387 0.86138 0.77427 0.84719 0.78005 1.20569 1.21895 1.21903 1.22614 1.02219 0.75651 0.99353 0.88418 0.87848 0.86986 0.77659 0.89947 0.89469 0.90667 0.89569 0.92538 0.91059 0.93724 0.95773 0.96012 0.78062 0.93520 0.89188 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.71 59.85 0.64 1.28 16 2 N -0.26 -2.97 3.79 -64.12 -0.24 -3.22 16 3 N -0.06 -0.81 13.14 60.35 0.79 -0.01 16 4 N -0.27 -3.56 12.35 30.47 0.38 -3.18 16 5 C -0.01 -0.12 10.41 -17.35 -0.18 -0.31 16 6 C -0.06 -0.73 6.92 -82.33 -0.57 -1.30 16 7 C 0.61 8.44 7.88 -12.61 -0.10 8.34 16 8 O -0.53 -8.84 15.35 5.26 0.08 -8.76 16 9 N -0.60 -7.66 3.32 -170.64 -0.57 -8.22 16 10 C 0.08 0.76 5.72 -2.41 -0.01 0.74 16 11 C -0.12 -1.27 6.30 -25.33 -0.16 -1.43 16 12 C -0.08 -1.13 0.73 -153.11 -0.11 -1.24 16 13 C -0.13 -1.97 8.07 37.16 0.30 -1.67 16 14 C 0.17 3.00 4.87 -4.04 -0.02 2.98 16 15 N -0.73 -17.26 5.12 -59.91 -0.31 -17.57 16 16 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.12 1.85 5.74 -2.40 -0.01 1.83 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.11 0.98 6.93 -51.93 -0.36 0.62 16 28 H 0.21 1.56 5.16 -52.49 -0.27 1.29 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.63 4.98 -51.93 -0.26 0.38 16 31 H 0.07 0.71 7.71 -51.93 -0.40 0.31 16 32 H 0.09 0.78 7.72 -51.93 -0.40 0.38 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.28 6.74 -51.93 -0.35 0.92 16 35 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 38 H 0.38 9.62 6.18 -40.82 -0.25 9.37 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.09 1.57 7.56 -51.93 -0.39 1.18 16 41 H 0.08 1.35 7.83 -51.93 -0.41 0.95 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -33.07 333.73 -5.20 -38.27 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.59 Total: 5.37 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.47 Total: 2.18 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.78 Total: -59.02 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.07 -5.20 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671728692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.114 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds