Wall clock time and date at job start Tue Mar 31 2020 03:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34806 * 126.59582 * 2 1 4 4 C 1.36596 * 106.83749 * 179.75949 * 3 2 1 5 5 C 1.47526 * 125.76997 * 180.21696 * 4 3 2 6 6 O 1.21591 * 120.00195 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00050 * 180.02562 * 5 4 3 8 8 C 1.47486 * 127.03216 * 0.02982 * 7 5 4 9 9 C 1.54004 * 107.08344 * 154.51362 * 8 7 5 10 10 C 1.54625 * 105.04461 * 1.30896 * 9 8 7 11 11 C 1.53003 * 110.73576 * 263.51162 * 10 9 8 12 12 C 1.52999 * 110.73954 * 140.36779 * 10 9 8 13 13 N 1.46503 * 109.46639 * 180.02562 * 12 10 9 14 14 C 1.36935 * 119.99617 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99959 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00018 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99821 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47052 * 89.99879 * 18 16 14 20 20 H 1.48498 * 109.47103 * 210.00015 * 18 16 14 21 21 H 1.48504 * 109.47221 * 329.99907 * 18 16 14 22 22 C 1.48119 * 127.03555 * 179.71351 * 7 5 4 23 23 N 1.34399 * 108.45911 * 0.24576 * 4 3 2 24 24 N 1.28753 * 109.52471 * 359.97438 * 23 4 3 25 25 H 1.09004 * 109.47399 * 89.99234 * 1 2 3 26 26 H 1.09000 * 109.47456 * 209.99844 * 1 2 3 27 27 H 1.09005 * 109.46854 * 329.99681 * 1 2 3 28 28 H 1.08002 * 126.58390 * 0.03248 * 3 2 1 29 29 H 1.08994 * 109.91631 * 273.87438 * 8 7 5 30 30 H 1.09003 * 109.91564 * 35.15511 * 8 7 5 31 31 H 1.08999 * 110.33178 * 120.19522 * 9 8 7 32 32 H 1.09003 * 110.32804 * 242.31611 * 9 8 7 33 33 H 1.08999 * 109.47555 * 60.00025 * 11 10 9 34 34 H 1.09001 * 109.46949 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.47070 * 299.99687 * 11 10 9 36 36 H 1.09001 * 109.47025 * 299.99823 * 12 10 9 37 37 H 1.09003 * 109.47280 * 60.00145 * 12 10 9 38 38 H 0.97000 * 120.00401 * 359.97438 * 13 12 10 39 39 H 0.96996 * 119.99733 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.65830 * 337.76946 * 22 7 5 41 41 H 1.08998 * 110.66258 * 100.88501 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5542 0.6205 0.0055 5 6 4.7704 1.4555 0.0120 6 8 4.6756 2.6678 0.0133 7 7 5.9866 0.8747 0.0165 8 6 6.2807 -0.5705 0.0152 9 6 7.6760 -0.7476 -0.6122 10 6 8.1581 0.6868 -0.9302 11 6 7.8740 1.0423 -2.3910 12 6 9.6479 0.8395 -0.6174 13 7 10.0744 2.2063 -0.9278 14 6 11.3763 2.5797 -0.7263 15 1 12.0888 1.8667 -0.3383 16 6 11.7806 3.8746 -1.0209 17 7 13.0322 4.2333 -0.8277 18 14 10.5483 5.1080 -1.6913 19 1 9.9069 5.8301 -0.5633 20 1 11.2486 6.0810 -2.5677 21 1 9.5096 4.3934 -2.4761 22 6 7.3012 1.5572 0.0174 23 7 3.5237 -0.7231 0.0033 24 7 2.3008 -1.1258 -0.0027 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9561 2.1161 0.0005 29 1 6.2822 -0.9501 1.0369 30 1 5.5365 -1.1003 -0.5794 31 1 8.3521 -1.2256 0.0967 32 1 7.6081 -1.3373 -1.5264 33 1 6.8018 0.9819 -2.5778 34 1 8.2217 2.0555 -2.5926 35 1 8.3965 0.3427 -3.0435 36 1 9.8199 0.6368 0.4397 37 1 10.2200 0.1343 -1.2204 38 1 9.4345 2.8468 -1.2759 39 1 13.3145 5.1382 -1.0332 40 1 7.2083 2.5711 -0.3718 41 1 7.7290 1.5666 1.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671729097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:05 Heat of formation + Delta-G solvation = 89.311779 kcal Electronic energy + Delta-G solvation = -23656.817786 eV Core-core repulsion = 20188.975604 eV Total energy + Delta-G solvation = -3467.842182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48717 -39.97268 -37.94505 -35.17032 -34.77482 -32.64403 -31.27148 -30.70081 -29.30254 -28.42957 -26.69050 -25.88831 -23.86337 -22.68795 -22.53112 -21.60017 -19.90521 -18.95543 -17.98785 -17.24414 -16.64376 -16.41505 -15.81568 -15.56103 -14.88947 -14.53399 -14.37800 -14.12085 -13.88099 -13.68675 -13.56284 -13.14388 -13.09356 -12.59166 -12.36638 -12.26279 -12.15379 -11.83580 -11.66581 -11.30381 -11.17354 -10.83982 -10.74196 -10.51746 -10.43065 -10.22868 -10.12071 -9.97727 -9.59167 -9.51244 -8.85117 -8.57185 -7.17688 -5.72079 -3.07086 0.81535 1.50207 1.68211 2.92316 3.20270 3.43236 3.46977 3.51160 3.92632 3.96284 4.36214 4.46234 4.61636 4.64598 4.75070 4.78529 4.79982 5.01958 5.02991 5.28617 5.42572 5.47121 5.59404 5.63894 5.74547 5.84272 5.95214 5.97840 5.99568 6.07205 6.12274 6.24360 6.31578 6.48816 6.57549 6.70560 6.77049 7.51816 7.64100 8.04196 8.11029 8.47068 9.26278 9.98867 10.18581 11.46401 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029096 B = 0.003561 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.097155 B = 7861.723230 C = 8510.723055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.365 5.365 3 C 0.092 3.908 4 C -0.092 4.092 5 C 0.617 3.383 6 O -0.541 6.541 7 N -0.603 5.603 8 C 0.102 3.898 9 C -0.123 4.123 10 C -0.084 4.084 11 C -0.131 4.131 12 C 0.174 3.826 13 N -0.755 5.755 14 C -0.242 4.242 15 H 0.090 0.910 16 C 0.005 3.995 17 N -0.935 5.935 18 Si 0.880 3.120 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.118 3.882 23 N -0.201 5.201 24 N -0.070 5.070 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.206 0.794 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.085 0.915 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.184 -11.212 1.281 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.150 5.150 3 C -0.065 4.065 4 C -0.231 4.231 5 C 0.403 3.597 6 O -0.418 6.418 7 N -0.335 5.335 8 C -0.021 4.021 9 C -0.162 4.162 10 C -0.086 4.086 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.401 5.401 14 C -0.372 4.372 15 H 0.108 0.892 16 C -0.191 4.191 17 N -0.583 5.583 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.003 4.003 23 N -0.074 5.074 24 N -0.050 5.050 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.222 0.778 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.091 -12.067 1.350 29.688 hybrid contribution -1.044 2.014 -0.475 2.317 sum -28.135 -10.053 0.875 29.890 Atomic orbital electron populations 1.22200 0.72507 1.05803 1.04814 1.50367 1.09141 1.05725 1.49791 1.23371 0.90107 0.95027 0.97997 1.21453 0.94468 0.90332 1.16881 1.16298 0.80576 0.85872 0.76914 1.90831 1.85977 1.12903 1.52081 1.48537 1.05088 1.08800 1.71036 1.22294 0.97495 0.80797 1.01476 1.22603 0.95332 0.96744 1.01531 1.21867 0.96595 0.94283 0.95810 1.21730 1.00272 1.02466 0.94359 1.20611 0.88925 0.87879 0.97940 1.42770 1.09242 1.08386 1.79726 1.19050 0.85293 0.96485 1.36336 0.89187 1.24654 0.95870 0.97113 1.01468 1.69701 1.15049 1.18866 1.54697 0.86612 0.81156 0.82061 0.79095 1.20932 1.21747 1.20294 1.22580 0.80178 0.97392 1.00185 1.74688 1.12435 1.10348 1.09967 1.82008 0.93633 1.06569 1.22799 0.89184 0.88055 0.88356 0.77772 0.91470 0.89101 0.90064 0.90458 0.93472 0.91923 0.92258 0.95114 0.94952 0.80491 0.93112 0.89661 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 11.51 59.85 0.69 0.90 16 2 N -0.37 -2.86 4.03 -67.85 -0.27 -3.13 16 3 C 0.09 0.83 11.31 -16.84 -0.19 0.64 16 4 C -0.09 -1.15 6.86 -83.55 -0.57 -1.73 16 5 C 0.62 9.43 7.89 -12.47 -0.10 9.33 16 6 O -0.54 -9.70 17.07 5.29 0.09 -9.61 16 7 N -0.60 -8.87 3.19 -171.21 -0.55 -9.42 16 8 C 0.10 1.26 6.25 -2.98 -0.02 1.24 16 9 C -0.12 -1.50 6.09 -25.35 -0.15 -1.66 16 10 C -0.08 -1.30 0.64 -152.81 -0.10 -1.40 16 11 C -0.13 -2.06 8.30 37.16 0.31 -1.75 16 12 C 0.17 3.28 5.11 -4.04 -0.02 3.26 16 13 N -0.75 -17.89 4.96 -59.90 -0.30 -18.19 16 14 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 16 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 17 N -0.93 -29.73 13.97 55.49 0.78 -28.95 16 18 Si 0.88 22.67 27.74 -169.99 -4.71 17.96 16 19 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 21 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 22 C 0.12 1.92 5.66 -2.31 -0.01 1.90 16 23 N -0.20 -2.53 9.50 32.85 0.31 -2.22 16 24 N -0.07 -0.78 13.78 60.35 0.83 0.05 16 25 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.21 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.10 6.14 -51.93 -0.32 0.78 16 31 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.08 0.85 7.87 -51.93 -0.41 0.45 16 33 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.06 1.13 6.69 -51.93 -0.35 0.78 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.36 8.51 4.07 -40.82 -0.17 8.35 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.08 1.56 7.75 -51.93 -0.40 1.15 16 41 H 0.08 1.31 8.02 -51.93 -0.42 0.90 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -36.12 338.41 -5.00 -41.13 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.86 Total: 3.55 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.42 Total: 3.74 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.80 Total: -61.87 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.12 -5.00 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671729097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.439 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds