Wall clock time and date at job start Tue Mar 31 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34806 * 126.59582 * 2 1 4 4 C 1.36596 * 106.83749 * 179.75949 * 3 2 1 5 5 C 1.47526 * 125.76997 * 180.21696 * 4 3 2 6 6 O 1.21591 * 120.00195 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00050 * 180.02562 * 5 4 3 8 8 C 1.47486 * 127.03216 * 0.02982 * 7 5 4 9 9 C 1.54004 * 107.08344 * 154.51362 * 8 7 5 10 10 C 1.54625 * 105.04461 * 1.30896 * 9 8 7 11 11 C 1.53003 * 110.73576 * 263.51162 * 10 9 8 12 12 C 1.52999 * 110.73954 * 140.36779 * 10 9 8 13 13 N 1.46503 * 109.46639 * 180.02562 * 12 10 9 14 14 C 1.36935 * 119.99617 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99959 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00018 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99821 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47052 * 89.99879 * 18 16 14 20 20 H 1.48498 * 109.47103 * 210.00015 * 18 16 14 21 21 H 1.48504 * 109.47221 * 329.99907 * 18 16 14 22 22 C 1.48119 * 127.03555 * 179.71351 * 7 5 4 23 23 N 1.34399 * 108.45911 * 0.24576 * 4 3 2 24 24 N 1.28753 * 109.52471 * 359.97438 * 23 4 3 25 25 H 1.09004 * 109.47399 * 89.99234 * 1 2 3 26 26 H 1.09000 * 109.47456 * 209.99844 * 1 2 3 27 27 H 1.09005 * 109.46854 * 329.99681 * 1 2 3 28 28 H 1.08002 * 126.58390 * 0.03248 * 3 2 1 29 29 H 1.08994 * 109.91631 * 273.87438 * 8 7 5 30 30 H 1.09003 * 109.91564 * 35.15511 * 8 7 5 31 31 H 1.08999 * 110.33178 * 120.19522 * 9 8 7 32 32 H 1.09003 * 110.32804 * 242.31611 * 9 8 7 33 33 H 1.08999 * 109.47555 * 60.00025 * 11 10 9 34 34 H 1.09001 * 109.46949 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.47070 * 299.99687 * 11 10 9 36 36 H 1.09001 * 109.47025 * 299.99823 * 12 10 9 37 37 H 1.09003 * 109.47280 * 60.00145 * 12 10 9 38 38 H 0.97000 * 120.00401 * 359.97438 * 13 12 10 39 39 H 0.96996 * 119.99733 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.65830 * 337.76946 * 22 7 5 41 41 H 1.08998 * 110.66258 * 100.88501 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5542 0.6205 0.0055 5 6 4.7704 1.4555 0.0120 6 8 4.6756 2.6678 0.0133 7 7 5.9866 0.8747 0.0165 8 6 6.2807 -0.5705 0.0152 9 6 7.6760 -0.7476 -0.6122 10 6 8.1581 0.6868 -0.9302 11 6 7.8740 1.0423 -2.3910 12 6 9.6479 0.8395 -0.6174 13 7 10.0744 2.2063 -0.9278 14 6 11.3763 2.5797 -0.7263 15 1 12.0888 1.8667 -0.3383 16 6 11.7806 3.8746 -1.0209 17 7 13.0322 4.2333 -0.8277 18 14 10.5483 5.1080 -1.6913 19 1 9.9069 5.8301 -0.5633 20 1 11.2486 6.0810 -2.5677 21 1 9.5096 4.3934 -2.4761 22 6 7.3012 1.5572 0.0174 23 7 3.5237 -0.7231 0.0033 24 7 2.3008 -1.1258 -0.0027 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9561 2.1161 0.0005 29 1 6.2822 -0.9501 1.0369 30 1 5.5365 -1.1003 -0.5794 31 1 8.3521 -1.2256 0.0967 32 1 7.6081 -1.3373 -1.5264 33 1 6.8018 0.9819 -2.5778 34 1 8.2217 2.0555 -2.5926 35 1 8.3965 0.3427 -3.0435 36 1 9.8199 0.6368 0.4397 37 1 10.2200 0.1343 -1.2204 38 1 9.4345 2.8468 -1.2759 39 1 13.3145 5.1382 -1.0332 40 1 7.2083 2.5711 -0.3718 41 1 7.7290 1.5666 1.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671729097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:04 Heat of formation + Delta-G solvation = 62.701443 kcal Electronic energy + Delta-G solvation = -23657.971697 eV Core-core repulsion = 20188.975604 eV Total energy + Delta-G solvation = -3468.996093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.24869 -41.13946 -39.19332 -36.64033 -35.62509 -34.31967 -32.69243 -31.96178 -30.49126 -29.00130 -27.97562 -27.35004 -25.21571 -23.91899 -23.23960 -23.02858 -20.88811 -20.40740 -19.60380 -18.41940 -17.44939 -17.37679 -16.90487 -16.57262 -16.49715 -15.70788 -15.64518 -15.53696 -15.06837 -14.74031 -14.68731 -14.14409 -14.06295 -13.90924 -13.73098 -13.52453 -13.34374 -13.13522 -12.94272 -12.82106 -12.66517 -12.22051 -12.13712 -11.88381 -11.70014 -11.57091 -11.41917 -11.32260 -11.25536 -10.97114 -10.41715 -9.71762 -9.26100 -8.01528 -5.33048 0.12127 0.57065 1.15017 1.37022 1.39427 1.45235 1.85871 2.15718 2.47946 3.06145 3.30354 3.36015 3.51107 3.63873 3.78862 3.84080 3.93195 3.97132 4.31022 4.33145 4.33954 4.37610 4.41810 4.61619 4.68402 4.72288 4.75960 4.78406 4.94292 5.02792 5.07252 5.07723 5.12140 5.29437 5.31378 5.42726 5.46606 5.78712 6.23118 6.43008 6.77740 7.03274 7.09772 7.87030 8.04435 9.20197 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029096 B = 0.003561 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.097155 B = 7861.723230 C = 8510.723055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.350 5.350 3 C 0.110 3.890 4 C -0.122 4.122 5 C 0.614 3.386 6 O -0.577 6.577 7 N -0.605 5.605 8 C 0.107 3.893 9 C -0.113 4.113 10 C -0.076 4.076 11 C -0.126 4.126 12 C 0.171 3.829 13 N -0.758 5.758 14 C -0.226 4.226 15 H 0.063 0.937 16 C -0.061 4.061 17 N -0.983 5.983 18 Si 0.943 3.057 19 H -0.282 1.282 20 H -0.294 1.294 21 H -0.257 1.257 22 C 0.118 3.882 23 N -0.217 5.217 24 N -0.090 5.090 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.235 0.765 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.060 0.940 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.515 -12.323 0.909 32.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.134 5.134 3 C -0.049 4.049 4 C -0.262 4.262 5 C 0.402 3.598 6 O -0.457 6.457 7 N -0.336 5.336 8 C -0.015 4.015 9 C -0.152 4.152 10 C -0.078 4.078 11 C -0.183 4.183 12 C 0.045 3.955 13 N -0.404 5.404 14 C -0.357 4.357 15 H 0.081 0.919 16 C -0.253 4.253 17 N -0.634 5.634 18 Si 0.771 3.229 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.181 1.181 22 C -0.004 4.004 23 N -0.090 5.090 24 N -0.071 5.071 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.147 0.853 28 H 0.251 0.749 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -30.492 -13.264 0.977 33.267 hybrid contribution -0.111 2.262 -0.304 2.285 sum -30.604 -11.002 0.672 32.528 Atomic orbital electron populations 1.22737 0.69211 1.07834 1.06630 1.50712 1.10740 1.04456 1.47541 1.23783 0.89057 0.96349 0.95711 1.21253 0.94554 0.90488 1.19861 1.16691 0.81333 0.85781 0.76015 1.90796 1.86603 1.14460 1.53859 1.48593 1.04508 1.09631 1.70831 1.22378 0.97534 0.79366 1.02225 1.22602 0.95233 0.94503 1.02835 1.21725 0.93975 0.96563 0.95515 1.21679 1.00852 1.01186 0.94627 1.20787 0.91345 0.85302 0.98048 1.42812 1.07502 1.10487 1.79570 1.19066 0.86699 0.95762 1.34148 0.91912 1.25385 0.97621 0.99273 1.02972 1.69862 1.17247 1.19289 1.56998 0.85586 0.79205 0.79554 0.78531 1.20802 1.22015 1.18149 1.22427 0.81495 0.96521 0.99978 1.74633 1.13395 1.10399 1.10604 1.81915 0.93667 1.07976 1.23527 0.87381 0.87107 0.85348 0.74885 0.90519 0.88553 0.88615 0.88599 0.92640 0.94486 0.91048 0.94767 0.94471 0.80277 0.93411 0.92150 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.08 11.51 127.77 1.47 1.55 16 2 N -0.35 -4.47 4.03 -368.59 -1.49 -5.96 16 3 C 0.11 1.70 11.31 83.85 0.95 2.65 16 4 C -0.12 -2.88 6.86 40.82 0.28 -2.60 16 5 C 0.61 18.36 7.89 86.69 0.68 19.04 16 6 O -0.58 -20.65 17.07 -4.00 -0.07 -20.72 16 7 N -0.60 -17.26 3.19 -813.84 -2.60 -19.86 16 8 C 0.11 2.42 6.25 86.53 0.54 2.97 16 9 C -0.11 -2.46 6.09 31.49 0.19 -2.27 16 10 C -0.08 -2.25 0.64 -51.08 -0.03 -2.29 16 11 C -0.13 -3.78 8.30 71.98 0.60 -3.18 16 12 C 0.17 6.30 5.11 86.38 0.44 6.74 16 13 N -0.76 -35.70 4.96 -343.43 -1.70 -37.40 16 14 C -0.23 -12.99 10.47 84.04 0.88 -12.11 16 15 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 16 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 17 N -0.98 -64.03 13.97 21.65 0.30 -63.73 16 18 Si 0.94 47.38 27.74 68.60 1.90 49.28 16 19 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 20 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 21 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 22 C 0.12 3.79 5.66 86.61 0.49 4.28 16 23 N -0.22 -5.14 9.50 -49.99 -0.48 -5.62 16 24 N -0.09 -1.85 13.78 37.02 0.51 -1.34 16 25 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 26 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.13 -0.57 8.14 -2.38 -0.02 -0.59 16 28 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 2.14 6.14 -2.39 -0.01 2.13 16 31 H 0.10 1.85 7.85 -2.39 -0.02 1.83 16 32 H 0.10 1.78 7.87 -2.39 -0.02 1.76 16 33 H 0.05 1.56 8.07 -2.39 -0.02 1.54 16 34 H 0.04 1.29 6.69 -2.39 -0.02 1.27 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.26 8.11 -2.39 -0.02 1.24 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.36 16.91 4.07 -92.71 -0.38 16.53 16 39 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 41 H 0.08 2.49 8.02 -2.39 -0.02 2.47 16 Total: -1.00 -80.21 338.41 3.95 -76.27 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.61 Total: 17.52 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.96 Total: 11.55 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -5.45 Total: -133.91 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.90 Total: 49.28 kcal Total: -80.21 3.95 -76.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671729097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.968 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds