Wall clock time and date at job start Tue Mar 31 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47040 * 270.00252 * 3 2 1 5 5 H 1.48500 * 109.47000 * 30.00320 * 3 2 1 6 6 H 1.48497 * 109.46943 * 150.00403 * 3 2 1 7 7 C 1.38817 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99976 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99673 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99433 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46762 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46990 * 180.02562 * 11 10 9 13 13 H 1.09007 * 110.88572 * 308.87877 * 12 11 10 14 14 C 1.55156 * 111.04008 * 72.78554 * 12 11 10 15 15 C 1.54339 * 103.02211 * 153.39334 * 14 12 11 16 16 N 1.47024 * 107.26244 * 338.14397 * 15 14 12 17 17 C 1.34779 * 125.64180 * 178.84590 * 16 15 14 18 18 O 1.21283 * 119.99609 * 179.68776 * 17 16 15 19 19 C 1.50697 * 120.00155 * 359.69438 * 17 16 15 20 20 C 1.50701 * 109.46751 * 179.97438 * 19 17 16 21 21 N 1.33241 * 125.52736 * 269.99331 * 20 19 17 22 22 C 1.30834 * 109.83169 * 180.02562 * 21 20 19 23 23 N 1.34423 * 108.07591 * 0.02562 * 22 21 20 24 24 H 0.96997 * 126.82715 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52961 * 90.00515 * 20 19 17 26 26 C 1.47426 * 108.70560 * 358.58283 * 16 15 14 27 27 H 0.96997 * 119.99783 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99805 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47128 * 60.00539 * 10 9 7 30 30 H 1.08993 * 109.47666 * 299.99959 * 10 9 7 31 31 H 1.08995 * 109.46908 * 60.00619 * 11 10 9 32 32 H 1.08996 * 109.47490 * 299.99782 * 11 10 9 33 33 H 1.09000 * 110.72132 * 271.95426 * 14 12 11 34 34 H 1.09003 * 110.71741 * 35.05170 * 14 12 11 35 35 H 1.08997 * 109.98881 * 218.66631 * 15 14 12 36 36 H 1.09001 * 109.77668 * 97.49638 * 15 14 12 37 37 H 1.08997 * 109.47036 * 60.00202 * 19 17 16 38 38 H 1.08997 * 109.46961 * 299.99438 * 19 17 16 39 39 H 1.07998 * 125.96050 * 180.02562 * 22 21 20 40 40 H 1.08999 * 110.36530 * 143.19426 * 26 16 15 41 41 H 1.08994 * 110.36762 * 265.51575 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.3814 -3.5163 -0.0030 13 1 6.0228 -4.1725 0.7901 14 6 6.2876 -4.2130 -1.3862 15 6 7.5750 -5.0629 -1.4355 16 7 8.5268 -4.4685 -0.4856 17 6 9.7636 -4.9329 -0.2187 18 8 10.4677 -4.3565 0.5831 19 6 10.2715 -6.1682 -0.9166 20 6 11.6701 -6.4724 -0.4449 21 7 12.7912 -6.0131 -0.9992 22 6 13.8287 -6.4687 -0.3452 23 7 13.3819 -7.2431 0.6586 24 1 13.9205 -7.7162 1.3120 25 7 11.9800 -7.2298 0.5744 26 6 7.9068 -3.2768 0.1218 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 3.8485 -3.0426 -0.8909 30 1 3.8492 -3.0423 0.8891 31 1 5.8804 -1.6194 0.8872 32 1 5.8791 -1.6202 -0.8928 33 1 5.4022 -4.8466 -1.4396 34 1 6.2819 -3.4763 -2.1895 35 1 7.9948 -5.0450 -2.4412 36 1 7.3511 -6.0888 -1.1431 37 1 10.2803 -5.9994 -1.9934 38 1 9.6187 -7.0100 -0.6861 39 1 14.8636 -6.2591 -0.5721 40 1 8.1931 -3.1930 1.1702 41 1 8.1957 -2.3788 -0.4242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672897664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:12 Heat of formation + Delta-G solvation = 63.030653 kcal Electronic energy + Delta-G solvation = -22419.052661 eV Core-core repulsion = 18950.070844 eV Total energy + Delta-G solvation = -3468.981817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46992 -40.19948 -37.93519 -35.33115 -33.72326 -33.01700 -32.04682 -31.19307 -29.72842 -29.56469 -27.41266 -24.06217 -23.17790 -22.99260 -21.54312 -20.97647 -20.27416 -19.33805 -18.64896 -17.58113 -17.45614 -16.36895 -16.00959 -15.66150 -15.13027 -14.71049 -14.61570 -14.22751 -13.99084 -13.78483 -13.40588 -13.04249 -12.94505 -12.74274 -12.52165 -12.40990 -12.18226 -11.78425 -11.57356 -11.26846 -10.87570 -10.68391 -10.57306 -10.50295 -10.41931 -10.39724 -10.22864 -10.10269 -9.87343 -9.57924 -8.87846 -8.81933 -7.21636 -5.75683 -3.11093 1.23365 2.24386 2.39366 2.43226 2.92328 3.39029 3.41988 3.46752 3.69434 4.20221 4.24629 4.45688 4.51970 4.60578 4.67786 4.74524 4.96722 5.03070 5.12393 5.23274 5.32807 5.48007 5.51829 5.60838 5.72487 5.76064 5.80655 5.84342 5.95890 5.98993 6.02408 6.12630 6.16078 6.31883 6.63590 6.74168 6.78435 7.29793 7.69312 7.94687 8.00875 8.43519 9.22932 9.95459 10.15201 11.42734 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048172 B = 0.002269 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.116703 B =12339.610373 C =12599.880487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.159 3.841 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.128 4.128 15 C 0.096 3.904 16 N -0.618 5.618 17 C 0.537 3.463 18 O -0.534 6.534 19 C -0.044 4.044 20 C 0.249 3.751 21 N -0.535 5.535 22 C 0.263 3.737 23 N -0.483 5.483 24 H 0.442 0.558 25 N -0.303 5.303 26 C 0.111 3.889 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.224 0.776 40 H 0.078 0.922 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.707 -16.652 -3.334 32.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.404 5.404 10 C 0.032 3.968 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.165 4.165 15 C -0.027 4.027 16 N -0.352 5.352 17 C 0.324 3.676 18 O -0.410 6.410 19 C -0.087 4.087 20 C -0.035 4.035 21 N -0.263 5.263 22 C -0.036 4.036 23 N -0.201 5.201 24 H 0.288 0.712 25 N -0.133 5.133 26 C -0.011 4.011 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 27.387 -16.588 -2.763 32.138 hybrid contribution 1.172 0.961 0.393 1.565 sum 28.559 -15.627 -2.370 32.641 Atomic orbital electron populations 1.69704 1.05104 1.25814 1.57661 1.24695 0.95276 0.97277 1.02096 0.86523 0.79217 0.84886 0.77768 1.21074 1.21749 1.20309 1.19068 0.80684 0.94723 1.42908 0.89243 1.42734 1.04081 1.02360 1.91207 1.20605 0.88370 0.89263 0.98596 1.21722 0.96345 0.95336 1.02414 1.22329 0.93191 0.98112 0.97772 0.89432 1.22753 0.96385 0.99414 0.97993 1.22183 0.89873 0.97781 0.92832 1.48454 1.14211 1.29312 1.43262 1.19789 0.80126 0.85300 0.82412 1.90741 1.55552 1.59532 1.35159 1.19859 0.88594 0.97845 1.02360 1.23299 0.95288 0.93796 0.91097 1.70357 0.97104 1.27249 1.31576 1.26080 1.00612 0.90588 0.86324 1.48076 1.05525 1.39767 1.26772 0.71249 1.77984 0.89569 1.24873 1.20842 1.22347 0.92147 0.87478 0.99175 0.93081 0.80695 0.95402 0.95681 0.91574 0.91566 0.89345 0.90033 0.91058 0.91096 0.85964 0.86404 0.76023 0.90393 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 22.24 27.74 -169.99 -4.71 17.53 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.95 10.47 -15.05 -0.16 -7.11 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -18.01 5.41 -59.91 -0.32 -18.34 16 10 C 0.16 2.93 6.16 -4.04 -0.02 2.90 16 11 C -0.12 -1.69 4.84 -26.73 -0.13 -1.82 16 12 C -0.09 -1.06 3.01 -88.47 -0.27 -1.32 16 13 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 14 C -0.13 -1.18 5.90 -24.89 -0.15 -1.33 16 15 C 0.10 0.75 6.49 -3.06 -0.02 0.73 16 16 N -0.62 -6.72 3.33 -170.51 -0.57 -7.29 16 17 C 0.54 6.71 7.84 -10.99 -0.09 6.63 16 18 O -0.53 -9.01 16.29 5.55 0.09 -8.92 16 19 C -0.04 -0.41 5.52 -29.04 -0.16 -0.57 16 20 C 0.25 2.86 6.63 -156.85 -1.04 1.82 16 21 N -0.53 -5.89 11.19 -11.98 -0.13 -6.02 16 22 C 0.26 1.80 13.13 -90.66 -1.19 0.61 16 23 N -0.48 -3.43 7.45 29.53 0.22 -3.21 16 24 H 0.44 1.36 8.96 -182.34 -1.63 -0.28 16 25 N -0.30 -3.44 12.80 32.42 0.41 -3.03 16 26 C 0.11 1.29 6.37 -2.53 -0.02 1.28 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.36 8.35 5.53 -40.82 -0.23 8.13 16 29 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.22 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 41 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -39.38 344.52 -9.70 -49.08 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.32 Total: 1.96 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.33 Total: 1.79 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: 0.38 Total: -66.63 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.38 -9.70 -49.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672897664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.108 kcal (2) G-P(sol) polarization free energy of solvation -39.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds