Wall clock time and date at job start Tue Mar 31 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47040 * 270.00252 * 3 2 1 5 5 H 1.48500 * 109.47000 * 30.00320 * 3 2 1 6 6 H 1.48497 * 109.46943 * 150.00403 * 3 2 1 7 7 C 1.38817 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99976 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99673 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99433 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46762 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46990 * 180.02562 * 11 10 9 13 13 H 1.09007 * 110.88572 * 308.87877 * 12 11 10 14 14 C 1.55156 * 111.04008 * 72.78554 * 12 11 10 15 15 C 1.54339 * 103.02211 * 153.39334 * 14 12 11 16 16 N 1.47024 * 107.26244 * 338.14397 * 15 14 12 17 17 C 1.34779 * 125.64180 * 178.84590 * 16 15 14 18 18 O 1.21283 * 119.99609 * 179.68776 * 17 16 15 19 19 C 1.50697 * 120.00155 * 359.69438 * 17 16 15 20 20 C 1.50701 * 109.46751 * 179.97438 * 19 17 16 21 21 N 1.33241 * 125.52736 * 269.99331 * 20 19 17 22 22 C 1.30834 * 109.83169 * 180.02562 * 21 20 19 23 23 N 1.34423 * 108.07591 * 0.02562 * 22 21 20 24 24 H 0.96997 * 126.82715 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52961 * 90.00515 * 20 19 17 26 26 C 1.47426 * 108.70560 * 358.58283 * 16 15 14 27 27 H 0.96997 * 119.99783 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99805 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47128 * 60.00539 * 10 9 7 30 30 H 1.08993 * 109.47666 * 299.99959 * 10 9 7 31 31 H 1.08995 * 109.46908 * 60.00619 * 11 10 9 32 32 H 1.08996 * 109.47490 * 299.99782 * 11 10 9 33 33 H 1.09000 * 110.72132 * 271.95426 * 14 12 11 34 34 H 1.09003 * 110.71741 * 35.05170 * 14 12 11 35 35 H 1.08997 * 109.98881 * 218.66631 * 15 14 12 36 36 H 1.09001 * 109.77668 * 97.49638 * 15 14 12 37 37 H 1.08997 * 109.47036 * 60.00202 * 19 17 16 38 38 H 1.08997 * 109.46961 * 299.99438 * 19 17 16 39 39 H 1.07998 * 125.96050 * 180.02562 * 22 21 20 40 40 H 1.08999 * 110.36530 * 143.19426 * 26 16 15 41 41 H 1.08994 * 110.36762 * 265.51575 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.3814 -3.5163 -0.0030 13 1 6.0228 -4.1725 0.7901 14 6 6.2876 -4.2130 -1.3862 15 6 7.5750 -5.0629 -1.4355 16 7 8.5268 -4.4685 -0.4856 17 6 9.7636 -4.9329 -0.2187 18 8 10.4677 -4.3565 0.5831 19 6 10.2715 -6.1682 -0.9166 20 6 11.6701 -6.4724 -0.4449 21 7 12.7912 -6.0131 -0.9992 22 6 13.8287 -6.4687 -0.3452 23 7 13.3819 -7.2431 0.6586 24 1 13.9205 -7.7162 1.3120 25 7 11.9800 -7.2298 0.5744 26 6 7.9068 -3.2768 0.1218 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 3.8485 -3.0426 -0.8909 30 1 3.8492 -3.0423 0.8891 31 1 5.8804 -1.6194 0.8872 32 1 5.8791 -1.6202 -0.8928 33 1 5.4022 -4.8466 -1.4396 34 1 6.2819 -3.4763 -2.1895 35 1 7.9948 -5.0450 -2.4412 36 1 7.3511 -6.0888 -1.1431 37 1 10.2803 -5.9994 -1.9934 38 1 9.6187 -7.0100 -0.6861 39 1 14.8636 -6.2591 -0.5721 40 1 8.1931 -3.1930 1.1702 41 1 8.1957 -2.3788 -0.4242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672897664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:11 Heat of formation + Delta-G solvation = 34.198505 kcal Electronic energy + Delta-G solvation = -22420.302917 eV Core-core repulsion = 18950.070844 eV Total energy + Delta-G solvation = -3470.232073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.09409 -41.08672 -38.92575 -36.96573 -34.65916 -34.25687 -33.04582 -32.63712 -30.69453 -30.39955 -28.64562 -25.55768 -24.10544 -23.70155 -23.07244 -21.84936 -21.26159 -20.15220 -19.58704 -19.23413 -18.30212 -17.27785 -16.81430 -16.59776 -16.36251 -15.87006 -15.70463 -15.69061 -15.16315 -14.76541 -14.56225 -14.33817 -14.11385 -13.79863 -13.55409 -13.24223 -13.15597 -13.02188 -12.89080 -12.78501 -12.40961 -12.04141 -11.87662 -11.71121 -11.51516 -11.49202 -11.30388 -11.10658 -11.00993 -10.93412 -10.65070 -9.68059 -9.27448 -8.01832 -5.35125 0.62406 1.39372 1.42666 1.50083 1.53966 1.62618 1.83509 2.17350 2.49638 3.14360 3.29594 3.38828 3.56497 3.65530 3.72639 3.84824 4.03448 4.14592 4.34881 4.37594 4.41068 4.48297 4.53410 4.57235 4.65141 4.78988 4.87452 4.92002 5.01980 5.11865 5.21663 5.25326 5.31116 5.35388 5.39349 5.48599 5.77433 6.22627 6.24924 6.46367 7.05655 7.07620 7.09609 7.86870 8.04940 9.19598 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048172 B = 0.002269 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.116703 B =12339.610373 C =12599.880487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.235 4.235 8 H 0.057 0.943 9 N -0.763 5.763 10 C 0.155 3.845 11 C -0.107 4.107 12 C -0.086 4.086 13 H 0.087 0.913 14 C -0.126 4.126 15 C 0.095 3.905 16 N -0.616 5.616 17 C 0.533 3.467 18 O -0.588 6.588 19 C -0.039 4.039 20 C 0.231 3.769 21 N -0.576 5.576 22 C 0.275 3.725 23 N -0.475 5.475 24 H 0.458 0.542 25 N -0.342 5.342 26 C 0.111 3.889 27 H 0.258 0.742 28 H 0.366 0.634 29 H 0.035 0.965 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.273 0.727 40 H 0.060 0.940 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.186 -17.186 -4.402 35.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.177 1.177 7 C -0.366 4.366 8 H 0.075 0.925 9 N -0.409 5.409 10 C 0.029 3.971 11 C -0.145 4.145 12 C -0.106 4.106 13 H 0.105 0.895 14 C -0.163 4.163 15 C -0.026 4.026 16 N -0.349 5.349 17 C 0.321 3.679 18 O -0.468 6.468 19 C -0.080 4.080 20 C -0.053 4.053 21 N -0.305 5.305 22 C -0.023 4.023 23 N -0.195 5.195 24 H 0.306 0.694 25 N -0.172 5.172 26 C -0.011 4.011 27 H 0.066 0.934 28 H 0.199 0.801 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.288 0.712 40 H 0.078 0.922 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 29.907 -17.183 -3.836 34.704 hybrid contribution 0.427 1.015 0.747 1.331 sum 30.333 -16.168 -3.089 34.512 Atomic orbital electron populations 1.69889 1.07140 1.26686 1.59769 1.25564 0.96200 1.01434 1.02728 0.85371 0.78578 0.79409 0.78204 1.20176 1.22378 1.17683 1.19069 0.82847 0.93496 1.41194 0.92477 1.42793 1.02535 1.04524 1.91011 1.20797 0.90703 0.87136 0.98433 1.21569 0.93332 0.96993 1.02648 1.22173 0.92340 0.96753 0.99356 0.89497 1.22772 0.97571 0.99624 0.96372 1.22402 0.88446 0.98308 0.93441 1.48532 1.14226 1.28887 1.43255 1.20367 0.79956 0.85765 0.81779 1.90707 1.57107 1.61334 1.37660 1.19958 0.88154 0.96802 1.03129 1.23686 0.96298 0.93971 0.91308 1.70344 0.97963 1.28891 1.33282 1.27023 1.01825 0.88625 0.84858 1.48022 1.04437 1.39776 1.27251 0.69356 1.77865 0.91886 1.25959 1.21472 1.22230 0.92381 0.88171 0.98348 0.93363 0.80146 0.94718 0.96236 0.91933 0.90802 0.88560 0.89912 0.88576 0.88829 0.83629 0.84111 0.71183 0.92154 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.49 13.97 21.65 0.30 -63.18 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 45.67 27.74 68.60 1.90 47.58 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 7 C -0.24 -13.49 10.47 84.03 0.88 -12.61 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.76 -35.42 5.41 -343.44 -1.86 -37.28 16 10 C 0.16 5.53 6.16 86.38 0.53 6.07 16 11 C -0.11 -2.83 4.84 30.60 0.15 -2.68 16 12 C -0.09 -1.79 3.01 -9.40 -0.03 -1.82 16 13 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 14 C -0.13 -1.97 5.90 31.79 0.19 -1.78 16 15 C 0.10 1.18 6.49 86.73 0.56 1.75 16 16 N -0.62 -12.31 3.33 -811.76 -2.70 -15.01 16 17 C 0.53 12.81 7.84 87.66 0.69 13.49 16 18 O -0.59 -20.08 16.29 -3.04 -0.05 -20.13 16 19 C -0.04 -0.65 5.52 29.10 0.16 -0.49 16 20 C 0.23 5.09 6.63 138.63 0.92 6.01 16 21 N -0.58 -11.94 11.19 -191.80 -2.15 -14.09 16 22 C 0.27 3.21 13.13 180.36 2.37 5.57 16 23 N -0.48 -6.08 7.45 -60.49 -0.45 -6.53 16 24 H 0.46 2.11 8.96 -213.10 -1.91 0.20 16 25 N -0.34 -7.51 12.80 -51.33 -0.66 -8.16 16 26 C 0.11 2.49 6.37 86.85 0.55 3.04 16 27 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.37 16.15 5.53 -92.71 -0.51 15.64 16 29 H 0.03 1.21 7.75 -2.39 -0.02 1.19 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.86 7.97 -2.39 -0.02 1.84 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.31 7.91 -2.39 -0.02 1.29 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.27 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 41 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -88.11 344.52 0.36 -87.75 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -1.43 Total: 16.07 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 7.44 Total: 12.98 kcal Atomic # 7 Polarization: -136.75 SS G_CDS: -7.51 Total: -144.25 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Total: -88.11 0.36 -87.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672897664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.948 kcal (2) G-P(sol) polarization free energy of solvation -88.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds