Wall clock time and date at job start Tue Mar 31 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.89214 * 57.42578 * 12 11 10 14 14 C 1.55166 * 111.00420 * 293.54388 * 12 11 10 15 15 C 1.54320 * 102.94209 * 206.42346 * 14 12 11 16 16 N 1.47019 * 107.27236 * 22.19556 * 15 14 12 17 17 C 1.34781 * 125.64943 * 181.01219 * 16 15 14 18 18 O 1.21275 * 120.00079 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99777 * 0.02562 * 17 16 15 20 20 C 1.50695 * 109.47082 * 179.97438 * 19 17 16 21 21 N 1.33243 * 125.52959 * 90.00194 * 20 19 17 22 22 C 1.30829 * 109.83227 * 180.02562 * 21 20 19 23 23 N 1.34425 * 108.07781 * 0.02562 * 22 21 20 24 24 H 0.97004 * 126.82227 * 179.97438 * 23 22 21 25 25 N 1.30714 * 125.52673 * 269.69418 * 20 19 17 26 26 C 1.47425 * 108.70568 * 1.05816 * 16 15 14 27 27 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 28 28 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 31 31 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 32 32 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 33 33 H 1.08998 * 110.71462 * 324.78883 * 14 12 11 34 34 H 1.09002 * 110.71671 * 88.05885 * 14 12 11 35 35 H 1.08998 * 109.87839 * 141.60945 * 15 14 12 36 36 H 1.08994 * 109.88512 * 262.77365 * 15 14 12 37 37 H 1.08994 * 109.47327 * 300.00120 * 19 17 16 38 38 H 1.09001 * 109.47048 * 60.00030 * 19 17 16 39 39 H 1.08002 * 125.95646 * 179.97438 * 22 21 20 40 40 H 1.09002 * 110.36455 * 217.03784 * 26 16 15 41 41 H 1.08993 * 110.36942 * 94.70992 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.4971 -6.2110 0.8302 14 6 2.6088 -6.3312 -1.3564 15 6 2.7127 -7.8656 -1.4836 16 7 1.6338 -8.4451 -0.6702 17 6 1.3962 -9.7613 -0.5032 18 8 0.4734 -10.1273 0.1933 19 6 2.2774 -10.7780 -1.1821 20 6 1.8027 -12.1656 -0.8352 21 7 0.9032 -12.8701 -1.5205 22 6 0.7201 -14.0323 -0.9483 23 7 1.5139 -14.0937 0.1348 24 1 1.5930 -14.8342 0.7564 25 7 2.2109 -12.8753 0.1838 26 6 0.8541 -7.3482 -0.0683 27 1 -0.4850 0.8401 0.0041 28 1 0.3555 -2.3880 -0.0113 29 1 2.6846 -3.7106 -0.9072 30 1 2.6847 -3.7186 0.8727 31 1 0.4367 -4.7660 0.8672 32 1 0.4374 -4.7577 -0.9127 33 1 2.0508 -5.9116 -2.1934 34 1 3.5995 -5.8818 -1.2880 35 1 2.5902 -8.1602 -2.5259 36 1 3.6798 -8.2038 -1.1119 37 1 2.2300 -10.6368 -2.2618 38 1 3.3058 -10.6511 -0.8439 39 1 0.0477 -14.8069 -1.2867 40 1 0.5397 -7.6155 0.9406 41 1 -0.0121 -7.1145 -0.6871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672897667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:15 Heat of formation + Delta-G solvation = 58.994178 kcal Electronic energy + Delta-G solvation = -22367.549557 eV Core-core repulsion = 18898.392705 eV Total energy + Delta-G solvation = -3469.156852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43912 -40.14222 -37.86881 -35.13364 -33.68495 -32.97475 -32.01574 -30.95021 -29.65214 -29.35668 -27.11307 -24.05681 -23.19620 -22.99452 -21.70339 -20.93553 -20.11474 -19.26142 -18.61335 -17.42905 -17.09152 -16.27871 -15.97477 -15.62456 -15.09191 -14.69676 -14.62605 -14.11775 -13.84770 -13.55335 -13.33438 -13.17842 -12.89555 -12.71053 -12.47745 -12.31104 -12.09953 -11.62492 -11.28542 -11.04626 -10.81366 -10.63294 -10.53627 -10.45346 -10.38846 -10.30701 -10.19318 -10.00504 -9.84038 -9.66009 -8.85010 -8.75883 -6.89693 -5.74449 -3.03087 1.26272 2.27285 2.43247 2.48214 2.97330 3.44915 3.49677 3.51656 3.72817 4.24490 4.29550 4.51719 4.55923 4.60796 4.76076 4.84616 5.00851 5.10126 5.16703 5.30332 5.42984 5.56634 5.64139 5.70401 5.81911 5.84255 5.87938 5.93454 6.00987 6.13237 6.15176 6.27963 6.38362 6.42549 6.66419 6.86386 6.91208 7.35715 7.71432 7.72374 7.99915 8.44720 9.55463 10.14546 10.48617 11.48533 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.061098 B = 0.002128 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.170034 B =13153.149069 C =13335.978368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.127 4.127 15 C 0.096 3.904 16 N -0.617 5.617 17 C 0.537 3.463 18 O -0.534 6.534 19 C -0.044 4.044 20 C 0.249 3.751 21 N -0.535 5.535 22 C 0.263 3.737 23 N -0.484 5.484 24 H 0.442 0.558 25 N -0.304 5.304 26 C 0.111 3.889 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.224 0.776 40 H 0.077 0.923 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 -29.251 -3.900 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.165 4.165 15 C -0.027 4.027 16 N -0.352 5.352 17 C 0.323 3.677 18 O -0.410 6.410 19 C -0.087 4.087 20 C -0.034 4.034 21 N -0.262 5.262 22 C -0.036 4.036 23 N -0.202 5.202 24 H 0.287 0.713 25 N -0.133 5.133 26 C -0.011 4.011 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.363 -29.019 -3.352 29.700 hybrid contribution 0.010 0.221 0.351 0.415 sum 5.373 -28.798 -3.001 29.448 Atomic orbital electron populations 1.69667 1.05108 1.25622 1.57854 1.24761 0.95553 0.97740 1.03146 0.86178 0.78617 0.83832 0.77499 1.21755 1.20771 1.21777 1.19232 0.91020 0.84220 1.42526 0.91201 1.42382 1.05924 1.00111 1.89496 1.20623 0.93478 0.85429 0.97738 1.21667 0.98665 0.92532 1.02548 1.22339 0.96877 0.94091 0.98079 0.89687 1.22743 1.02188 0.92988 0.98568 1.22181 0.90282 0.95000 0.95216 1.48463 1.32290 1.04794 1.49666 1.19775 0.85000 0.81481 0.81404 1.90738 1.31512 1.79280 1.39468 1.19860 1.00285 0.85137 1.03387 1.23301 0.93485 0.96544 0.90104 1.70357 1.19560 1.04174 1.32158 1.26080 0.94929 0.96810 0.85793 1.48077 1.32666 1.15495 1.23929 0.71267 1.77982 1.20034 0.93232 1.22070 1.22361 0.94502 0.85192 0.99089 0.93530 0.78309 0.96226 0.96548 0.91543 0.91537 0.89947 0.89500 0.91107 0.91191 0.85972 0.86459 0.76028 0.90435 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.74 -18.73 5.60 -59.91 -0.34 -19.07 16 10 C 0.15 3.01 6.11 -4.04 -0.02 2.99 16 11 C -0.12 -1.77 4.84 -26.73 -0.13 -1.90 16 12 C -0.09 -1.13 3.07 -88.47 -0.27 -1.41 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.13 -1.27 5.59 -24.89 -0.14 -1.41 16 15 C 0.10 0.81 6.49 -3.07 -0.02 0.79 16 16 N -0.62 -7.07 3.33 -170.53 -0.57 -7.64 16 17 C 0.54 6.95 7.84 -10.98 -0.09 6.87 16 18 O -0.53 -9.25 16.29 5.56 0.09 -9.16 16 19 C -0.04 -0.43 5.52 -29.04 -0.16 -0.59 16 20 C 0.25 2.94 6.63 -156.85 -1.04 1.90 16 21 N -0.53 -6.03 11.19 -11.98 -0.13 -6.17 16 22 C 0.26 1.87 13.13 -90.66 -1.19 0.68 16 23 N -0.48 -3.54 7.45 29.53 0.22 -3.32 16 24 H 0.44 1.45 8.96 -182.33 -1.63 -0.19 16 25 N -0.30 -3.52 12.80 32.42 0.41 -3.10 16 26 C 0.11 1.38 6.38 -2.53 -0.02 1.36 16 27 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 29 H 0.02 0.38 7.51 -51.93 -0.39 -0.01 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.22 0.37 8.06 -52.49 -0.42 -0.06 16 40 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 41 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -38.57 347.33 -10.06 -48.63 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.36 Total: 3.08 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -3.32 Total: 1.82 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: 0.32 Total: -67.09 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.57 -10.06 -48.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672897667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.624 kcal (2) G-P(sol) polarization free energy of solvation -38.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds