Wall clock time and date at job start Tue Mar 31 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48506 * 109.46969 * 270.00147 * 3 2 1 5 5 H 1.48499 * 109.47145 * 30.00158 * 3 2 1 6 6 H 1.48504 * 109.46876 * 150.00216 * 3 2 1 7 7 C 1.38815 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99845 * 173.93684 * 9 7 2 11 11 C 1.52995 * 112.85227 * 294.82019 * 10 9 7 12 12 N 1.46499 * 109.46816 * 294.03349 * 11 10 9 13 13 C 1.34786 * 120.00042 * 176.09063 * 12 11 10 14 14 O 1.21280 * 119.99722 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00301 * 180.27752 * 13 12 11 16 16 C 1.53001 * 109.47378 * 179.72248 * 15 13 12 17 17 N 1.46501 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.35308 * 125.86768 * 124.71978 * 17 16 15 19 19 C 1.35355 * 106.17795 * 179.90149 * 18 17 16 20 20 N 1.33778 * 106.49087 * 0.35078 * 19 18 17 21 21 N 1.28631 * 108.88531 * 359.77177 * 20 19 18 22 22 C 1.53784 * 113.61496 * 66.01709 * 10 9 7 23 23 C 1.53961 * 87.01876 * 89.22526 * 22 10 9 24 24 C 1.53782 * 113.61378 * 163.62294 * 10 9 7 25 25 H 0.96998 * 119.99916 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99833 * 353.93486 * 9 7 2 27 27 H 1.08995 * 109.47328 * 174.03642 * 11 10 9 28 28 H 1.09002 * 109.47254 * 54.03086 * 11 10 9 29 29 H 0.96996 * 120.00551 * 356.08914 * 12 11 10 30 30 H 1.09006 * 109.47023 * 299.72784 * 15 13 12 31 31 H 1.09006 * 109.47340 * 59.71930 * 15 13 12 32 32 H 1.08997 * 109.47300 * 300.00178 * 16 15 13 33 33 H 1.09006 * 109.46784 * 59.99968 * 16 15 13 34 34 H 1.08003 * 126.91133 * 0.02562 * 18 17 16 35 35 H 1.07991 * 126.75336 * 180.12474 * 19 18 17 36 36 H 1.08993 * 113.61587 * 203.74793 * 22 10 9 37 37 H 1.09000 * 113.61271 * 334.65175 * 22 10 9 38 38 H 1.08999 * 113.53882 * 270.81263 * 23 22 10 39 39 H 1.09001 * 113.66128 * 139.93141 * 23 22 10 40 40 H 1.09007 * 113.61467 * 25.34794 * 24 10 9 41 41 H 1.08997 * 113.61585 * 156.24909 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0519 -3.6532 -0.1351 11 6 2.7400 -3.8017 -1.4935 12 7 1.7262 -3.8909 -2.5472 13 6 2.1015 -3.9476 -3.8405 14 8 3.2786 -3.9243 -4.1319 15 6 1.0585 -4.0331 -4.9248 16 6 1.7457 -4.0779 -6.2911 17 7 0.7316 -4.1616 -7.3452 18 6 0.6045 -3.3140 -8.3921 19 6 -0.4516 -3.7595 -9.1120 20 7 -0.9175 -4.8392 -8.4742 21 7 -0.1948 -5.0510 -7.4315 22 6 2.9702 -3.9663 1.0581 23 6 1.7609 -4.6697 1.7009 24 6 1.2263 -4.8841 0.2750 25 1 -0.4850 0.8400 0.0004 26 1 0.3597 -2.3904 0.0886 27 1 3.3474 -4.7067 -1.4961 28 1 3.3771 -2.9360 -1.6747 29 1 0.7848 -3.9093 -2.3143 30 1 0.4644 -4.9366 -4.7870 31 1 0.4085 -3.1596 -4.8734 32 1 2.3397 -3.1745 -6.4289 33 1 2.3956 -4.9515 -6.3424 34 1 1.2228 -2.4558 -8.6106 35 1 -0.8434 -3.3263 -10.0203 36 1 3.7892 -4.6424 0.8131 37 1 3.2995 -3.0797 1.6000 38 1 1.1415 -4.0062 2.3044 39 1 2.0163 -5.5962 2.2154 40 1 0.1499 -4.7375 0.1857 41 1 1.5677 -5.8117 -0.1844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673160932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:03 Heat of formation + Delta-G solvation = 92.928264 kcal Electronic energy + Delta-G solvation = -23208.759757 eV Core-core repulsion = 19741.074397 eV Total energy + Delta-G solvation = -3467.685360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.35589 -39.75378 -38.60532 -35.38600 -34.03989 -33.33364 -31.34643 -31.08068 -30.07193 -27.56241 -25.37886 -25.15627 -23.80392 -22.81228 -21.93300 -21.36085 -20.11078 -18.33073 -17.93358 -17.21980 -16.78783 -16.39047 -15.72462 -15.63810 -15.04903 -15.00748 -14.54690 -14.28248 -13.94157 -13.76040 -13.31502 -13.15797 -12.82495 -12.63339 -12.22408 -11.93544 -11.82534 -11.53888 -11.30961 -11.07533 -11.03362 -10.92258 -10.42257 -10.31014 -10.29522 -10.18415 -9.81771 -9.72951 -9.54148 -9.51745 -8.96197 -8.65064 -7.11963 -5.89883 -3.20001 1.46214 2.14361 2.45774 2.78988 3.35539 3.42177 3.42680 3.49212 4.20516 4.40572 4.47013 4.52350 4.82045 4.91796 5.07448 5.10573 5.11508 5.20243 5.24535 5.26987 5.36854 5.45480 5.50883 5.65899 5.70850 5.95553 6.01384 6.06456 6.12938 6.26914 6.31143 6.40495 6.43948 6.63539 6.78723 6.89031 6.97707 7.62613 7.79102 8.28729 8.37858 8.42173 9.40130 9.93478 10.28639 11.32038 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003828 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.443386 B = 7312.825019 C = 8488.417674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.173 3.827 11 C 0.119 3.881 12 N -0.698 5.698 13 C 0.518 3.482 14 O -0.557 6.557 15 C -0.156 4.156 16 C 0.132 3.868 17 N -0.289 5.289 18 C -0.047 4.047 19 C -0.056 4.056 20 N -0.275 5.275 21 N -0.086 5.086 22 C -0.151 4.151 23 C -0.128 4.128 24 C -0.145 4.145 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.402 0.598 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.191 0.809 35 H 0.189 0.811 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -8.680 -9.972 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.007 4.007 12 N -0.347 5.347 13 C 0.302 3.698 14 O -0.436 6.436 15 C -0.197 4.197 16 C 0.011 3.989 17 N -0.082 5.082 18 C -0.198 4.198 19 C -0.213 4.213 20 N -0.141 5.141 21 N -0.066 5.066 22 C -0.191 4.191 23 C -0.166 4.166 24 C -0.183 4.183 25 H 0.066 0.934 26 H 0.221 0.779 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.237 0.763 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.208 0.792 35 H 0.206 0.794 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.362 -9.750 -9.491 13.809 hybrid contribution 0.267 2.188 -0.297 2.224 sum 2.628 -7.562 -9.787 12.644 Atomic orbital electron populations 1.69648 1.05086 1.25816 1.57264 1.24723 0.95454 0.97639 1.02561 0.86237 0.78801 0.83880 0.77556 1.21733 1.21763 1.20654 1.19097 0.91064 0.83622 1.43038 0.91140 1.42067 1.06086 0.99034 1.86833 1.20822 0.93044 0.87477 0.90656 1.21902 0.90572 1.00655 0.87522 1.45723 1.11257 1.72407 1.05289 1.20023 0.89210 0.76761 0.83783 1.90693 1.18623 1.51422 1.82891 1.21868 0.99189 1.06438 0.92200 1.21877 0.86953 1.06728 0.83304 1.47603 1.22604 1.18743 1.19280 1.23766 1.03756 1.00590 0.91690 1.23627 0.97407 0.96883 1.03431 1.75115 1.21289 1.15640 1.02069 1.78282 0.98627 1.13358 1.16309 1.23341 0.96356 1.00394 0.99006 1.22661 0.98482 0.99552 0.95885 1.23157 0.99945 0.97785 0.97444 0.93442 0.77902 0.92728 0.91069 0.76324 0.87275 0.87848 0.86599 0.87295 0.79210 0.79415 0.91306 0.90687 0.90033 0.92681 0.91620 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.35 13.07 55.49 0.73 -25.62 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.04 9.06 -15.06 -0.14 -6.17 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.70 -15.44 5.18 -46.48 -0.24 -15.68 16 10 C 0.17 3.01 0.80 -131.01 -0.10 2.91 16 11 C 0.12 2.04 5.03 -4.04 -0.02 2.02 16 12 N -0.70 -10.72 5.45 -60.30 -0.33 -11.05 16 13 C 0.52 7.62 7.83 -10.99 -0.09 7.54 16 14 O -0.56 -9.77 15.98 5.56 0.09 -9.68 16 15 C -0.16 -1.75 5.82 -27.89 -0.16 -1.92 16 16 C 0.13 1.34 5.74 -4.04 -0.02 1.32 16 17 N -0.29 -3.23 3.44 -61.26 -0.21 -3.44 16 18 C -0.05 -0.43 11.57 -17.05 -0.20 -0.63 16 19 C -0.06 -0.57 12.06 -17.73 -0.21 -0.79 16 20 N -0.28 -3.81 12.41 30.24 0.38 -3.44 16 21 N -0.09 -1.18 12.91 60.35 0.78 -0.40 16 22 C -0.15 -2.46 7.29 -25.82 -0.19 -2.65 16 23 C -0.13 -1.91 8.00 -25.82 -0.21 -2.11 16 24 C -0.15 -2.10 7.08 -25.92 -0.18 -2.29 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.39 9.16 7.87 -40.82 -0.32 8.84 16 27 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 28 H 0.07 1.43 7.85 -51.93 -0.41 1.02 16 29 H 0.40 5.80 8.30 -40.82 -0.34 5.46 16 30 H 0.11 1.14 8.12 -51.93 -0.42 0.72 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.12 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.19 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 37 H 0.07 1.39 7.86 -51.93 -0.41 0.98 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -31.74 350.20 -6.25 -37.99 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.07 Total: 12.56 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.62 Total: -3.06 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 1.10 Total: -59.63 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.74 -6.25 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673160932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.917 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds