Wall clock time and date at job start Tue Mar 31 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99943 * 2 1 4 4 H 1.48506 * 109.46969 * 270.00147 * 3 2 1 5 5 H 1.48499 * 109.47145 * 30.00158 * 3 2 1 6 6 H 1.48504 * 109.46876 * 150.00216 * 3 2 1 7 7 C 1.38815 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99845 * 173.93684 * 9 7 2 11 11 C 1.52995 * 112.85227 * 294.82019 * 10 9 7 12 12 N 1.46499 * 109.46816 * 294.03349 * 11 10 9 13 13 C 1.34786 * 120.00042 * 176.09063 * 12 11 10 14 14 O 1.21280 * 119.99722 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00301 * 180.27752 * 13 12 11 16 16 C 1.53001 * 109.47378 * 179.72248 * 15 13 12 17 17 N 1.46501 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.35308 * 125.86768 * 124.71978 * 17 16 15 19 19 C 1.35355 * 106.17795 * 179.90149 * 18 17 16 20 20 N 1.33778 * 106.49087 * 0.35078 * 19 18 17 21 21 N 1.28631 * 108.88531 * 359.77177 * 20 19 18 22 22 C 1.53784 * 113.61496 * 66.01709 * 10 9 7 23 23 C 1.53961 * 87.01876 * 89.22526 * 22 10 9 24 24 C 1.53782 * 113.61378 * 163.62294 * 10 9 7 25 25 H 0.96998 * 119.99916 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99833 * 353.93486 * 9 7 2 27 27 H 1.08995 * 109.47328 * 174.03642 * 11 10 9 28 28 H 1.09002 * 109.47254 * 54.03086 * 11 10 9 29 29 H 0.96996 * 120.00551 * 356.08914 * 12 11 10 30 30 H 1.09006 * 109.47023 * 299.72784 * 15 13 12 31 31 H 1.09006 * 109.47340 * 59.71930 * 15 13 12 32 32 H 1.08997 * 109.47300 * 300.00178 * 16 15 13 33 33 H 1.09006 * 109.46784 * 59.99968 * 16 15 13 34 34 H 1.08003 * 126.91133 * 0.02562 * 18 17 16 35 35 H 1.07991 * 126.75336 * 180.12474 * 19 18 17 36 36 H 1.08993 * 113.61587 * 203.74793 * 22 10 9 37 37 H 1.09000 * 113.61271 * 334.65175 * 22 10 9 38 38 H 1.08999 * 113.53882 * 270.81263 * 23 22 10 39 39 H 1.09001 * 113.66128 * 139.93141 * 23 22 10 40 40 H 1.09007 * 113.61467 * 25.34794 * 24 10 9 41 41 H 1.08997 * 113.61585 * 156.24909 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0519 -3.6532 -0.1351 11 6 2.7400 -3.8017 -1.4935 12 7 1.7262 -3.8909 -2.5472 13 6 2.1015 -3.9476 -3.8405 14 8 3.2786 -3.9243 -4.1319 15 6 1.0585 -4.0331 -4.9248 16 6 1.7457 -4.0779 -6.2911 17 7 0.7316 -4.1616 -7.3452 18 6 0.6045 -3.3140 -8.3921 19 6 -0.4516 -3.7595 -9.1120 20 7 -0.9175 -4.8392 -8.4742 21 7 -0.1948 -5.0510 -7.4315 22 6 2.9702 -3.9663 1.0581 23 6 1.7609 -4.6697 1.7009 24 6 1.2263 -4.8841 0.2750 25 1 -0.4850 0.8400 0.0004 26 1 0.3597 -2.3904 0.0886 27 1 3.3474 -4.7067 -1.4961 28 1 3.3771 -2.9360 -1.6747 29 1 0.7848 -3.9093 -2.3143 30 1 0.4644 -4.9366 -4.7870 31 1 0.4085 -3.1596 -4.8734 32 1 2.3397 -3.1745 -6.4289 33 1 2.3956 -4.9515 -6.3424 34 1 1.2228 -2.4558 -8.6106 35 1 -0.8434 -3.3263 -10.0203 36 1 3.7892 -4.6424 0.8131 37 1 3.2995 -3.0797 1.6000 38 1 1.1415 -4.0062 2.3044 39 1 2.0163 -5.5962 2.2154 40 1 0.1499 -4.7375 0.1857 41 1 1.5677 -5.8117 -0.1844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673160932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:02 Heat of formation + Delta-G solvation = 70.074558 kcal Electronic energy + Delta-G solvation = -23209.750768 eV Core-core repulsion = 19741.074397 eV Total energy + Delta-G solvation = -3468.676371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.18357 -41.02557 -39.91954 -36.27941 -35.33411 -35.19693 -32.31562 -31.94431 -31.80901 -28.87294 -26.72123 -26.29099 -25.49566 -23.61835 -23.15099 -22.34229 -21.28480 -19.72604 -19.11247 -18.86633 -17.81807 -17.38998 -16.95484 -16.83061 -16.42482 -15.94888 -15.80481 -15.67559 -15.17383 -15.01305 -14.85040 -14.29611 -14.17635 -13.63521 -13.60610 -13.08887 -12.97417 -12.91700 -12.80902 -12.57398 -12.43271 -12.16396 -11.94089 -11.87649 -11.60667 -11.48909 -11.23462 -11.04944 -10.88242 -10.71888 -10.32321 -9.97116 -8.98872 -7.94591 -5.21423 0.66021 1.33660 1.44520 1.46336 1.53052 1.60343 1.64438 2.34624 2.54410 3.37698 3.39334 3.63433 3.70699 3.75265 3.79606 3.85010 3.99424 4.09430 4.21636 4.25036 4.28235 4.33847 4.45786 4.64402 4.65980 4.84002 4.87384 4.90446 4.91927 5.01957 5.12944 5.29338 5.30925 5.42376 5.49788 5.62662 5.63503 5.70959 6.29592 6.57408 7.21838 7.35922 7.52813 8.10171 8.33363 9.27842 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003828 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.443386 B = 7312.825019 C = 8488.417674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.222 4.222 8 H 0.067 0.933 9 N -0.706 5.706 10 C 0.158 3.842 11 C 0.129 3.871 12 N -0.700 5.700 13 C 0.518 3.482 14 O -0.585 6.585 15 C -0.143 4.143 16 C 0.135 3.865 17 N -0.290 5.290 18 C -0.037 4.037 19 C -0.064 4.064 20 N -0.312 5.312 21 N -0.123 5.123 22 C -0.150 4.150 23 C -0.122 4.122 24 C -0.128 4.128 25 H 0.249 0.751 26 H 0.377 0.623 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.408 0.592 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.230 0.770 35 H 0.219 0.781 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -9.531 -10.765 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.220 1.220 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.354 4.354 8 H 0.085 0.915 9 N -0.345 5.345 10 C 0.067 3.933 11 C 0.002 3.998 12 N -0.349 5.349 13 C 0.304 3.696 14 O -0.466 6.466 15 C -0.184 4.184 16 C 0.015 3.985 17 N -0.084 5.084 18 C -0.188 4.188 19 C -0.221 4.221 20 N -0.177 5.177 21 N -0.102 5.102 22 C -0.190 4.190 23 C -0.160 4.160 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.210 0.790 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.243 0.757 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.246 0.754 35 H 0.236 0.764 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.147 -10.651 -10.274 15.130 hybrid contribution 0.110 2.407 -0.076 2.411 sum 3.258 -8.244 -10.350 13.627 Atomic orbital electron populations 1.69767 1.06126 1.25702 1.59726 1.25307 0.96120 1.00194 1.04144 0.85404 0.77929 0.80904 0.77137 1.21999 1.22426 1.19918 1.19302 0.90995 0.84908 1.40165 0.91531 1.42122 1.05709 0.99927 1.86787 1.21120 0.94157 0.86856 0.91189 1.21693 0.90588 0.99888 0.87592 1.45743 1.11209 1.72476 1.05424 1.20524 0.89442 0.75585 0.84020 1.90678 1.20070 1.52603 1.83263 1.21751 0.98081 1.06917 0.91609 1.21896 0.86620 1.07545 0.82475 1.47697 1.22208 1.18705 1.19764 1.24458 1.03406 1.00661 0.90276 1.24254 0.97559 0.95988 1.04327 1.75060 1.22344 1.17464 1.02833 1.78239 0.99945 1.14885 1.17145 1.23365 0.97517 1.00060 0.98034 1.22594 0.97123 1.00155 0.96105 1.23116 0.99568 0.97105 0.96791 0.94227 0.79026 0.90886 0.94666 0.75728 0.86344 0.87696 0.85217 0.87121 0.75371 0.76426 0.88643 0.93524 0.92245 0.89685 0.91631 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.46 13.07 21.65 0.28 -55.18 16 2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.96 44.88 29.55 68.60 2.03 46.90 16 4 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.22 -11.38 9.06 84.03 0.76 -10.61 16 8 H 0.07 3.42 7.83 -2.91 -0.02 3.40 16 9 N -0.71 -31.25 5.18 -300.97 -1.56 -32.81 16 10 C 0.16 5.33 0.80 4.13 0.00 5.33 16 11 C 0.13 4.25 5.03 86.38 0.43 4.68 16 12 N -0.70 -20.71 5.45 -463.07 -2.52 -23.24 16 13 C 0.52 14.66 7.83 87.65 0.69 15.34 16 14 O -0.58 -19.94 15.98 -3.03 -0.05 -19.98 16 15 C -0.14 -3.01 5.82 29.85 0.17 -2.84 16 16 C 0.14 2.51 5.74 86.38 0.50 3.00 16 17 N -0.29 -6.00 3.44 -347.72 -1.20 -7.20 16 18 C -0.04 -0.58 11.57 83.49 0.97 0.39 16 19 C -0.06 -1.18 12.06 83.73 1.01 -0.17 16 20 N -0.31 -8.41 12.41 -58.26 -0.72 -9.14 16 21 N -0.12 -3.30 12.91 37.02 0.48 -2.82 16 22 C -0.15 -4.65 7.29 31.18 0.23 -4.42 16 23 C -0.12 -3.36 8.00 31.18 0.25 -3.11 16 24 C -0.13 -3.38 7.08 31.12 0.22 -3.16 16 25 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.38 18.04 7.87 -92.71 -0.73 17.31 16 27 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 28 H 0.03 1.41 7.85 -2.39 -0.02 1.39 16 29 H 0.41 11.30 8.30 -92.71 -0.77 10.53 16 30 H 0.12 2.31 8.12 -2.38 -0.02 2.29 16 31 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.13 2.04 8.03 -2.39 -0.02 2.03 16 33 H 0.11 2.03 8.10 -2.38 -0.02 2.01 16 34 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.22 2.31 8.06 -2.92 -0.02 2.29 16 36 H 0.10 2.45 8.04 -2.39 -0.02 2.44 16 37 H 0.05 1.71 7.86 -2.39 -0.02 1.69 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16 41 H 0.11 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -69.86 350.20 1.98 -67.88 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.45 Total: 34.21 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.70 Total: 1.37 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.24 Total: -130.38 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.86 1.98 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673160932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.952 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds