Wall clock time and date at job start Tue Mar 31 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 6 6 O 1.42904 * 109.46767 * 299.99455 * 4 3 2 7 7 C 1.52998 * 109.46920 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.46877 * 184.99533 * 7 4 3 9 9 C 1.36938 * 120.00219 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99918 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00223 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99765 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99982 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47200 * 60.00464 * 13 11 9 15 15 H 1.48506 * 109.46943 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47099 * 299.99884 * 13 11 9 17 17 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00463 * 179.97438 * 17 2 1 19 19 C 1.50700 * 119.99675 * 359.72090 * 17 2 1 20 20 C 1.50703 * 109.47148 * 180.28037 * 19 17 2 21 21 C 1.38674 * 120.41549 * 269.72087 * 20 19 17 22 22 C 1.38623 * 118.42058 * 179.78213 * 21 20 19 23 23 C 1.38234 * 119.15980 * 0.51280 * 22 21 20 24 24 N 1.31845 * 120.76246 * 359.72678 * 23 22 21 25 25 C 1.31889 * 121.72658 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 27 27 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 28 28 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 29 29 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 30 30 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 31 31 H 0.96701 * 113.99803 * 300.00100 * 6 4 3 32 32 H 1.08994 * 109.47457 * 304.99409 * 7 4 3 33 33 H 1.09004 * 109.47090 * 65.00272 * 7 4 3 34 34 H 0.97004 * 119.99744 * 0.02562 * 8 7 4 35 35 H 0.97002 * 119.99389 * 180.02562 * 12 11 9 36 36 H 1.09009 * 109.47352 * 300.27556 * 19 17 2 37 37 H 1.08998 * 109.47585 * 60.27844 * 19 17 2 38 38 H 1.07998 * 120.79073 * 0.02562 * 21 20 19 39 39 H 1.08003 * 120.42363 * 180.22048 * 22 21 20 40 40 H 1.07998 * 119.61444 * 179.74897 * 23 22 21 41 41 H 1.08002 * 119.61626 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 1 1.5000 1.8408 -1.9563 6 8 3.2248 0.7146 -2.1162 7 6 3.2169 3.0358 -1.4425 8 7 3.3568 3.5188 -2.8185 9 6 4.0101 4.6962 -3.0677 10 1 4.4227 5.2684 -2.2500 11 6 4.1422 5.1542 -4.3714 12 7 3.6390 4.4570 -5.3680 13 14 5.0341 6.7599 -4.7114 14 1 6.4327 6.6625 -4.2221 15 1 5.0378 7.0243 -6.1728 16 1 4.3403 7.8697 -4.0099 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 0.0053 20 6 2.3648 -3.6177 0.0104 21 6 2.8166 -4.1604 -1.1831 22 6 3.7205 -5.2100 -1.1302 23 6 4.1304 -5.6845 0.1018 24 7 3.6758 -5.1471 1.2166 25 6 2.8190 -4.1445 1.2042 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1384 0.5137 31 1 4.0872 0.5461 -1.7127 32 1 2.6692 3.7711 -0.8532 33 1 4.2052 2.8851 -1.0081 34 1 2.9859 3.0050 -3.5529 35 1 3.7317 4.7769 -6.2790 36 1 0.7588 -2.5261 0.8956 37 1 0.7587 -2.5340 -0.8844 38 1 2.4754 -3.7720 -2.1313 39 1 4.0963 -5.6546 -2.0400 40 1 4.8313 -6.5046 0.1515 41 1 2.4691 -3.7299 2.1381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677070649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:16 Heat of formation + Delta-G solvation = -61.999087 kcal Electronic energy + Delta-G solvation = -23114.827100 eV Core-core repulsion = 19608.130836 eV Total energy + Delta-G solvation = -3506.696265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45381 -40.52779 -38.65350 -36.36734 -35.85713 -34.52736 -33.22882 -32.82391 -31.11745 -28.99500 -27.88957 -26.56623 -24.64439 -24.48926 -23.22303 -22.54956 -20.19612 -19.25011 -18.20137 -18.02295 -17.71460 -17.45995 -16.83286 -16.63241 -16.38686 -16.23813 -15.68014 -15.33548 -14.99617 -14.76099 -14.34886 -14.22192 -14.06224 -13.94422 -13.87519 -13.66220 -13.23887 -13.04727 -12.93044 -12.75686 -12.64446 -12.38119 -12.21927 -12.03840 -11.83172 -11.16276 -10.98522 -10.92439 -10.62967 -10.40334 -9.87427 -9.50956 -9.03633 -7.96543 -5.26707 0.17209 0.37391 1.45224 1.49223 1.55337 1.71328 2.08083 2.54424 2.90077 3.34549 3.49103 3.52484 3.70984 3.76864 3.84890 3.93340 4.08419 4.09781 4.12615 4.22472 4.35544 4.47697 4.48501 4.53941 4.57659 4.70350 4.76150 4.84084 4.89229 4.90260 5.01912 5.20734 5.23295 5.33448 5.44176 5.52964 5.80078 6.24197 6.45838 6.76795 7.03846 7.27113 7.30540 8.06424 8.29580 9.26678 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.002962 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.900034 B = 9451.995063 C =10056.727918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.610 5.610 3 C 0.096 3.904 4 C 0.097 3.903 5 H 0.091 0.909 6 O -0.565 6.565 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.251 4.251 10 H 0.077 0.923 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.274 1.274 17 C 0.512 3.488 18 O -0.576 6.576 19 C -0.088 4.088 20 C -0.122 4.122 21 C -0.076 4.076 22 C -0.173 4.173 23 C 0.081 3.919 24 N -0.514 5.514 25 C 0.095 3.905 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.374 0.626 32 H 0.041 0.959 33 H 0.018 0.982 34 H 0.374 0.626 35 H 0.252 0.748 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -18.290 14.331 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C -0.029 4.029 4 C 0.036 3.964 5 H 0.109 0.891 6 O -0.371 6.371 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.383 4.383 10 H 0.094 0.906 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.199 1.199 17 C 0.302 3.698 18 O -0.455 6.455 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.102 4.102 22 C -0.193 4.193 23 C -0.076 4.076 24 N -0.223 5.223 25 C -0.062 4.062 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.193 0.807 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.459 -18.485 14.821 25.511 hybrid contribution 0.767 1.260 -1.314 1.975 sum -8.692 -17.225 13.507 23.552 Atomic orbital electron populations 1.22151 0.76877 1.04748 1.03710 1.47805 1.08437 1.04910 1.73035 1.22004 0.98821 0.86363 0.95666 1.22414 0.94334 0.86165 0.93444 0.89090 1.86497 1.33379 1.59389 1.57808 1.21452 0.97397 0.94730 0.86856 1.42460 1.67876 1.24674 1.03378 1.19633 1.27574 0.98517 0.92532 0.90551 1.25649 1.02995 1.02773 0.95522 1.69847 1.52196 1.41216 0.98749 0.85155 0.78491 0.79413 0.76348 1.20524 1.22055 1.19945 1.20997 0.87738 0.86060 0.75029 1.90680 1.16032 1.87808 1.50968 1.20675 0.96899 0.87371 1.07801 1.20516 0.99866 0.97630 0.94453 1.21781 0.95068 0.94625 0.98726 1.22428 0.98478 0.97949 1.00440 1.23182 0.97698 0.98923 0.87775 1.67665 1.11011 1.10902 1.32692 1.22860 0.92945 0.92208 0.98151 0.89922 0.90623 0.89038 0.86858 0.90776 0.77830 0.94131 0.96421 0.79417 0.93968 0.84562 0.85697 0.84098 0.82511 0.80719 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.24 127.77 1.31 2.03 16 2 N -0.61 -12.14 2.83 -846.76 -2.39 -14.53 16 3 C 0.10 2.29 5.15 86.38 0.44 2.73 16 4 C 0.10 3.15 3.27 30.60 0.10 3.25 16 5 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 6 O -0.57 -21.51 12.09 -140.57 -1.70 -23.21 16 7 C 0.12 4.91 5.90 86.38 0.51 5.42 16 8 N -0.74 -39.15 5.55 -343.46 -1.91 -41.06 16 9 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 10 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 11 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 12 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 13 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 17 C 0.51 11.85 7.18 87.66 0.63 12.48 16 18 O -0.58 -18.71 14.40 5.37 0.08 -18.63 16 19 C -0.09 -1.28 4.41 29.10 0.13 -1.15 16 20 C -0.12 -2.42 4.39 -19.77 -0.09 -2.50 16 21 C -0.08 -1.52 9.86 22.47 0.22 -1.30 16 22 C -0.17 -3.18 10.11 22.36 0.23 -2.95 16 23 C 0.08 1.60 11.18 84.69 0.95 2.54 16 24 N -0.51 -12.25 10.36 -195.85 -2.03 -14.28 16 25 C 0.09 2.03 10.86 84.67 0.92 2.94 16 26 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.86 8.07 -2.39 -0.02 0.84 16 28 H 0.09 0.64 6.45 -2.39 -0.02 0.62 16 29 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.07 2.00 7.42 -2.39 -0.02 1.98 16 31 H 0.37 13.98 8.45 -74.06 -0.63 13.36 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.37 21.52 7.67 -92.71 -0.71 20.81 16 35 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.14 1.06 8.06 -2.38 -0.02 1.04 16 37 H 0.13 1.33 7.36 -2.39 -0.02 1.31 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -80.00 349.68 0.72 -79.27 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.29 Total: 38.54 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.65 Total: 5.84 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -6.05 Total: -130.77 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.62 Total: -41.83 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -80.00 0.72 -79.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677070649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.275 kcal (2) G-P(sol) polarization free energy of solvation -79.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds