Wall clock time and date at job start Tue Mar 31 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48498 * 109.47304 * 240.00285 * 3 2 1 5 5 H 1.48503 * 109.46636 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47278 * 119.99780 * 3 2 1 7 7 C 1.38813 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00446 * 160.28425 * 7 2 1 9 9 N 1.36941 * 120.00054 * 340.28398 * 7 2 1 10 10 C 1.46496 * 119.99916 * 320.54146 * 9 7 2 11 11 C 1.53002 * 109.46807 * 269.99471 * 10 9 7 12 12 C 1.53005 * 109.47450 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47500 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00343 * 180.02562 * 13 12 11 15 15 O 1.21288 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00239 * 180.02562 * 14 13 12 17 17 N 1.46501 * 109.47206 * 179.97438 * 16 14 13 18 18 C 1.34428 * 126.82663 * 124.99372 * 17 16 14 19 19 N 1.30831 * 108.07759 * 179.97438 * 18 17 16 20 20 C 1.33243 * 109.83234 * 0.02562 * 19 18 17 21 21 N 1.30712 * 108.94237 * 0.25619 * 20 19 18 22 22 C 1.46503 * 119.99895 * 140.52968 * 9 7 2 23 23 C 1.52991 * 117.49984 * 3.29511 * 22 9 7 24 24 C 1.52990 * 60.00104 * 252.50733 * 23 22 9 25 25 H 0.97000 * 119.99919 * 355.01058 * 1 2 3 26 26 H 1.08998 * 109.47594 * 149.99808 * 10 9 7 27 27 H 1.08995 * 109.47653 * 29.99370 * 10 9 7 28 28 H 1.09005 * 109.47176 * 59.99825 * 11 10 9 29 29 H 1.09002 * 109.46983 * 299.99947 * 11 10 9 30 30 H 1.08997 * 109.47076 * 59.99364 * 12 11 10 31 31 H 1.09004 * 109.46794 * 300.00435 * 12 11 10 32 32 H 0.97005 * 119.99567 * 359.97438 * 13 12 11 33 33 H 1.08989 * 109.47385 * 59.99797 * 16 14 13 34 34 H 1.09002 * 109.46812 * 299.99438 * 16 14 13 35 35 H 1.07995 * 125.95996 * 359.97438 * 18 17 16 36 36 H 1.07997 * 125.52983 * 180.02562 * 20 19 18 37 37 H 1.09001 * 115.54243 * 149.00244 * 22 9 7 38 38 H 1.09001 * 117.49878 * 359.97438 * 23 22 9 39 39 H 1.09010 * 117.49816 * 145.01347 * 23 22 9 40 40 H 1.09008 * 117.49923 * 252.51469 * 24 23 22 41 41 H 1.09001 * 117.51942 * 107.48033 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2295 -0.3161 9 7 1.3858 -2.3535 0.3990 10 6 0.4639 -2.3297 1.5373 11 6 1.2390 -2.6058 2.8272 12 6 0.2762 -2.5816 4.0161 13 7 1.0185 -2.8454 5.2512 14 6 0.3717 -2.8733 6.4332 15 8 -0.8249 -2.6796 6.4745 16 6 1.1354 -3.1441 7.7038 17 7 0.2134 -3.1210 8.8421 18 6 0.0324 -4.0936 9.7522 19 7 -0.8743 -3.6888 10.6041 20 6 -1.2939 -2.4686 10.2719 21 7 -0.6611 -2.0805 9.1960 22 6 1.6395 -3.6091 -0.3120 23 6 2.6699 -3.5849 -1.4426 24 6 1.1797 -3.7017 -1.7682 25 1 -0.4850 0.8369 0.0731 26 1 -0.3005 -3.0948 1.4019 27 1 -0.0099 -1.3501 1.6008 28 1 2.0035 -1.8406 2.9626 29 1 1.7128 -3.5855 2.7637 30 1 -0.4879 -3.3469 3.8804 31 1 -0.1980 -1.6021 4.0796 32 1 1.9754 -3.0007 5.2181 33 1 1.8986 -2.3779 7.8393 34 1 1.6105 -4.1231 7.6405 35 1 0.5458 -5.0434 9.7760 36 1 -2.0390 -1.8949 10.8030 37 1 1.5776 -4.5131 0.2939 38 1 3.1588 -2.6347 -1.6577 39 1 3.2865 -4.4732 -1.5807 40 1 0.8156 -4.6669 -2.1206 41 1 0.6879 -2.8286 -2.1972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690014264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:19 Heat of formation + Delta-G solvation = 106.573113 kcal Electronic energy + Delta-G solvation = -22671.331825 eV Core-core repulsion = 19204.238151 eV Total energy + Delta-G solvation = -3467.093674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.22413 -39.63755 -37.17483 -35.45030 -34.19824 -33.61569 -31.72863 -31.34513 -29.77197 -28.14772 -25.31588 -23.63755 -22.33165 -22.15097 -21.46684 -21.09392 -20.46591 -19.66725 -17.66223 -17.40949 -16.45059 -16.05233 -15.72218 -15.45027 -15.19712 -14.85162 -14.64423 -14.39231 -14.13055 -13.73735 -13.59584 -12.92606 -12.68916 -12.26226 -12.06018 -11.94028 -11.56793 -11.06812 -10.87511 -10.81216 -10.71270 -10.45312 -10.25388 -10.20063 -10.12204 -9.92655 -9.72706 -9.62144 -9.60962 -9.29649 -9.02181 -8.52574 -6.58747 -5.84004 -3.51624 1.44120 1.97685 2.44473 2.82892 3.07751 3.30583 3.37920 3.38226 4.10432 4.17818 4.38201 4.48179 4.63899 4.69051 4.90387 5.06601 5.10961 5.27466 5.54896 5.65487 5.87471 5.91711 6.00635 6.08054 6.22747 6.23899 6.27022 6.30474 6.46328 6.50992 6.59536 6.59832 6.66921 6.99688 7.03623 7.21234 7.41608 7.56090 7.73683 7.90074 8.10237 8.44008 9.09542 9.70347 10.29042 11.10811 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.002931 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.942851 B = 9549.824632 C =10380.625448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.016 3.984 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.154 3.846 11 C -0.145 4.145 12 C 0.122 3.878 13 N -0.722 5.722 14 C 0.494 3.506 15 O -0.514 6.514 16 C 0.110 3.890 17 N -0.369 5.369 18 C 0.252 3.748 19 N -0.546 5.546 20 C 0.190 3.810 21 N -0.287 5.287 22 C 0.120 3.880 23 C -0.196 4.196 24 C -0.221 4.221 25 H 0.256 0.744 26 H 0.029 0.971 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.219 0.781 36 H 0.216 0.784 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -9.067 14.779 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.185 4.185 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.001 4.001 13 N -0.374 5.374 14 C 0.277 3.723 15 O -0.388 6.388 16 C -0.017 4.017 17 N -0.160 5.160 18 C -0.044 4.044 19 N -0.273 5.273 20 C -0.113 4.113 21 N -0.113 5.113 22 C 0.011 3.989 23 C -0.234 4.234 24 C -0.262 4.262 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.235 0.765 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.644 -8.232 14.600 17.153 hybrid contribution 1.098 0.601 -0.290 1.285 sum 4.742 -7.631 14.310 16.896 Atomic orbital electron populations 1.70040 1.05530 1.26441 1.50233 1.25256 0.94998 0.98837 0.99408 0.86495 0.79258 0.83441 0.78327 1.20619 1.21510 1.20815 1.18965 0.93272 0.85024 1.42054 0.91945 1.43337 1.50925 1.03154 1.29367 1.20749 0.90520 1.02735 0.83234 1.22472 0.99227 1.01316 0.95566 1.21497 0.95122 1.01527 0.81933 1.46085 1.12226 1.72405 1.06684 1.20377 0.88514 0.78581 0.84869 1.90814 1.14398 1.47291 1.86293 1.21624 0.90756 1.06330 0.82982 1.49998 1.30962 1.13166 1.21878 1.26058 0.95923 0.95712 0.86746 1.70515 1.14514 1.13131 1.29182 1.26030 1.00096 0.92134 0.93047 1.78237 1.06564 1.10649 1.15854 1.21227 1.00624 0.90585 0.86414 1.23016 0.92206 1.01758 1.06435 1.23345 0.96805 1.00953 1.05144 0.93363 0.95286 0.88690 0.91430 0.93062 0.91839 0.91313 0.76581 0.86308 0.85199 0.76489 0.76740 0.89732 0.88505 0.90871 0.91315 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.43 11.50 55.49 0.64 -23.79 16 2 C 0.02 0.43 4.98 -17.43 -0.09 0.34 16 3 Si 0.90 20.76 29.60 -169.99 -5.03 15.73 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.26 -6.75 8.47 -15.06 -0.13 -6.88 16 8 H 0.06 1.61 6.75 -52.48 -0.35 1.25 16 9 N -0.55 -12.84 2.75 -165.67 -0.46 -13.30 16 10 C 0.15 3.31 5.33 -4.04 -0.02 3.29 16 11 C -0.15 -2.43 5.65 -26.73 -0.15 -2.58 16 12 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 13 N -0.72 -8.34 5.56 -60.30 -0.33 -8.67 16 14 C 0.49 6.21 7.87 -10.99 -0.09 6.12 16 15 O -0.51 -9.24 15.73 5.55 0.09 -9.15 16 16 C 0.11 0.84 7.03 -5.19 -0.04 0.80 16 17 N -0.37 -4.01 3.41 -63.82 -0.22 -4.22 16 18 C 0.25 2.30 12.63 -90.66 -1.14 1.15 16 19 N -0.55 -6.42 11.19 -15.83 -0.18 -6.59 16 20 C 0.19 2.28 13.03 -91.81 -1.20 1.08 16 21 N -0.29 -4.03 11.80 29.29 0.35 -3.68 16 22 C 0.12 2.47 6.56 -67.94 -0.45 2.02 16 23 C -0.20 -3.75 9.80 -26.74 -0.26 -4.01 16 24 C -0.22 -4.45 10.36 -26.74 -0.28 -4.73 16 25 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 26 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 27 H 0.10 2.35 5.59 -51.93 -0.29 2.06 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 3.28 8.47 -40.82 -0.35 2.94 16 33 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.13 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.22 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.22 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.10 2.03 6.46 -51.93 -0.34 1.70 16 39 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 41 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -35.19 351.38 -9.66 -44.85 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.95 Total: 5.10 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.86 Total: -1.55 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.20 Total: -60.27 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.19 -9.66 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690014264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.423 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds