Wall clock time and date at job start Tue Mar 31 2020 03:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00113 * 2 1 4 4 H 1.48503 * 109.46940 * 270.00112 * 3 2 1 5 5 H 1.48495 * 109.46997 * 30.00082 * 3 2 1 6 6 H 1.48498 * 109.46964 * 150.00184 * 3 2 1 7 7 C 1.38816 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00426 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00197 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.84954 * 336.19717 * 10 9 7 12 12 C 1.53782 * 113.69374 * 107.46053 * 10 9 7 13 13 C 1.53780 * 87.08254 * 139.99395 * 12 10 9 14 14 H 1.09004 * 113.68944 * 89.12610 * 13 12 10 15 15 N 1.46497 * 113.61654 * 220.01959 * 13 12 10 16 16 C 1.34771 * 120.00079 * 252.49913 * 15 13 12 17 17 O 1.21280 * 120.00203 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00175 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.47288 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47400 * 179.97438 * 19 18 16 21 21 N 1.46499 * 109.47683 * 179.97438 * 20 19 18 22 22 C 1.34430 * 126.82358 * 124.97840 * 21 20 19 23 23 N 1.30832 * 108.07308 * 179.79414 * 22 21 20 24 24 C 1.33234 * 109.83313 * 0.40801 * 23 22 21 25 25 N 1.30720 * 108.94479 * 359.58957 * 24 23 22 26 26 C 1.53777 * 113.61997 * 204.99911 * 10 9 7 27 27 H 0.97002 * 119.99813 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00380 * 359.97438 * 9 7 2 29 29 H 1.09001 * 113.61214 * 25.44623 * 12 10 9 30 30 H 1.08998 * 113.61325 * 254.54648 * 12 10 9 31 31 H 0.97003 * 119.99681 * 72.49741 * 15 13 12 32 32 H 1.09000 * 109.46961 * 59.99824 * 18 16 15 33 33 H 1.09003 * 109.46874 * 299.99946 * 18 16 15 34 34 H 1.09000 * 109.47170 * 60.00065 * 19 18 16 35 35 H 1.09003 * 109.47211 * 299.99853 * 19 18 16 36 36 H 1.09009 * 109.47058 * 60.00005 * 20 19 18 37 37 H 1.09002 * 109.47378 * 300.00457 * 20 19 18 38 38 H 1.07997 * 125.95719 * 0.08180 * 22 21 20 39 39 H 1.08002 * 125.53021 * 179.85853 * 24 23 22 40 40 H 1.09000 * 113.61784 * 105.38222 * 26 10 9 41 41 H 1.09003 * 113.60896 * 334.48303 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0656 -3.5639 -0.4060 12 6 2.0010 -4.4032 1.3428 13 6 1.8496 -5.6981 0.5272 14 1 2.7995 -6.1644 0.2655 15 7 0.8904 -6.6447 1.1016 16 6 1.3293 -7.7723 1.6950 17 8 2.5184 -8.0037 1.7532 18 6 0.3426 -8.7458 2.2864 19 6 1.0964 -9.9312 2.8926 20 6 0.0947 -10.9193 3.4936 21 7 0.8164 -12.0546 4.0735 22 6 0.7230 -12.5091 5.3352 23 7 1.5217 -13.5384 5.4560 24 6 2.1454 -13.7645 4.3006 25 7 1.7440 -12.8837 3.4221 26 6 1.2601 -4.8288 -0.5960 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 1.1233 -4.1589 1.9411 30 1 2.9297 -4.3511 1.9110 31 1 -0.0607 -6.4599 1.0548 32 1 -0.3279 -9.1034 1.5050 33 1 -0.2377 -8.2481 3.0634 34 1 1.7672 -9.5740 3.6740 35 1 1.6764 -10.4288 2.1154 36 1 -0.5765 -11.2766 2.7125 37 1 -0.4850 -10.4214 4.2709 38 1 0.0946 -12.0993 6.1120 39 1 2.8628 -14.5510 4.1181 40 1 1.5906 -5.1203 -1.5929 41 1 0.1798 -4.7008 -0.5277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690362041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:23 Heat of formation + Delta-G solvation = 78.450591 kcal Electronic energy + Delta-G solvation = -21944.505711 eV Core-core repulsion = 18476.192552 eV Total energy + Delta-G solvation = -3468.313159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36018 -39.99844 -38.13541 -35.88016 -34.13099 -32.90178 -32.30108 -31.51718 -29.93781 -27.72590 -25.17190 -24.67549 -23.56000 -22.34075 -22.06518 -21.32747 -20.39962 -19.29862 -17.86338 -17.18864 -16.85280 -16.48014 -16.15558 -15.72286 -15.24339 -14.73613 -14.55548 -14.47639 -14.23589 -13.83235 -13.29583 -13.08390 -12.91871 -12.79546 -12.19665 -12.13081 -11.98324 -11.96539 -11.30750 -11.25143 -10.96066 -10.68692 -10.53513 -10.38067 -10.34885 -10.13252 -10.09334 -10.04639 -9.80479 -9.61182 -8.95346 -8.80524 -7.02954 -5.84335 -3.13226 1.29939 1.93618 2.60361 2.65139 3.19137 3.39776 3.45527 3.46874 3.97711 4.00468 4.34808 4.41843 4.55043 4.60677 4.71871 4.80082 4.90073 5.00120 5.05722 5.18265 5.19453 5.33462 5.43257 5.59793 5.82035 5.86322 5.89385 5.91265 6.07803 6.09948 6.20403 6.25830 6.43785 6.45712 6.56264 6.70271 7.01120 7.56572 7.65237 7.74356 8.23471 8.34179 9.45665 10.01908 10.36519 11.38007 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.047280 B = 0.001979 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.075950 B =14145.356471 C =14182.505915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.108 0.892 15 N -0.714 5.714 16 C 0.510 3.490 17 O -0.544 6.544 18 C -0.140 4.140 19 C -0.115 4.115 20 C 0.128 3.872 21 N -0.377 5.377 22 C 0.252 3.748 23 N -0.550 5.550 24 C 0.195 3.805 25 N -0.314 5.314 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.400 0.600 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -23.823 7.274 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.364 5.364 16 C 0.296 3.704 17 O -0.422 6.422 18 C -0.181 4.181 19 C -0.154 4.154 20 C 0.006 3.994 21 N -0.168 5.168 22 C -0.045 4.045 23 N -0.277 5.277 24 C -0.108 4.108 25 N -0.142 5.142 26 C -0.199 4.199 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.234 0.766 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.235 0.765 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.649 -23.897 6.814 24.991 hybrid contribution -0.609 1.234 0.154 1.385 sum -3.258 -22.663 6.968 23.933 Atomic orbital electron populations 1.69654 1.05153 1.25798 1.57494 1.24770 0.95554 0.97839 1.02721 0.86170 0.78704 0.83642 0.77563 1.21638 1.21748 1.20677 1.19322 0.91172 0.84144 1.42959 0.90969 1.42348 1.05664 0.99764 1.87004 1.21349 0.95503 0.84946 0.92628 0.90238 1.24327 1.01793 0.95183 1.00531 1.22499 0.93313 0.87465 0.95551 0.87365 1.46073 1.10524 1.21433 1.58379 1.20507 0.89671 0.82021 0.78185 1.90718 1.17314 1.76010 1.58115 1.21588 0.98586 0.95862 1.02032 1.21571 0.97530 0.94118 1.02179 1.21923 0.93817 0.83782 0.99879 1.50578 1.32278 1.24724 1.09204 1.26099 0.97972 0.92446 0.87973 1.70534 1.12866 1.17593 1.26729 1.26035 0.99590 0.98566 0.86593 1.78086 1.07959 1.06406 1.21715 1.23862 1.01168 0.97344 0.97479 0.93444 0.78110 0.90237 0.92294 0.76608 0.88501 0.88504 0.90436 0.89485 0.89055 0.87818 0.76515 0.76729 0.91515 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.19 5.40 -52.64 -0.28 -17.47 16 10 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 11 H 0.08 1.52 8.10 -51.92 -0.42 1.10 16 12 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 13 C 0.12 1.68 4.24 -67.12 -0.28 1.39 16 14 H 0.11 1.67 7.46 -51.93 -0.39 1.29 16 15 N -0.71 -8.25 5.35 -53.02 -0.28 -8.54 16 16 C 0.51 6.08 7.83 -10.99 -0.09 5.99 16 17 O -0.54 -8.96 15.58 5.56 0.09 -8.88 16 18 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 19 C -0.12 -0.91 4.71 -26.73 -0.13 -1.03 16 20 C 0.13 0.65 6.55 -4.04 -0.03 0.62 16 21 N -0.38 -3.06 3.69 -62.63 -0.23 -3.29 16 22 C 0.25 1.82 12.63 -90.65 -1.14 0.67 16 23 N -0.55 -5.39 11.19 -15.83 -0.18 -5.57 16 24 C 0.20 1.84 13.03 -91.81 -1.20 0.64 16 25 N -0.31 -3.35 12.57 29.29 0.37 -2.99 16 26 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.38 9.79 7.92 -40.82 -0.32 9.46 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.40 3.57 8.73 -40.82 -0.36 3.21 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.09 0.93 8.10 -51.93 -0.42 0.50 16 36 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.10 0.19 8.09 -51.93 -0.42 -0.23 16 38 H 0.22 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -36.13 353.33 -9.56 -45.69 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.10 Total: 8.45 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.97 Total: -2.97 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 0.12 Total: -64.65 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.13 -9.56 -45.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690362041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.143 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds