Wall clock time and date at job start Tue Mar 31 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00113 * 2 1 4 4 H 1.48503 * 109.46940 * 270.00112 * 3 2 1 5 5 H 1.48495 * 109.46997 * 30.00082 * 3 2 1 6 6 H 1.48498 * 109.46964 * 150.00184 * 3 2 1 7 7 C 1.38816 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00426 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00197 * 180.02562 * 9 7 2 11 11 H 1.09008 * 112.84954 * 336.19717 * 10 9 7 12 12 C 1.53782 * 113.69374 * 107.46053 * 10 9 7 13 13 C 1.53780 * 87.08254 * 139.99395 * 12 10 9 14 14 H 1.09004 * 113.68944 * 89.12610 * 13 12 10 15 15 N 1.46497 * 113.61654 * 220.01959 * 13 12 10 16 16 C 1.34771 * 120.00079 * 252.49913 * 15 13 12 17 17 O 1.21280 * 120.00203 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00175 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.47288 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47400 * 179.97438 * 19 18 16 21 21 N 1.46499 * 109.47683 * 179.97438 * 20 19 18 22 22 C 1.34430 * 126.82358 * 124.97840 * 21 20 19 23 23 N 1.30832 * 108.07308 * 179.79414 * 22 21 20 24 24 C 1.33234 * 109.83313 * 0.40801 * 23 22 21 25 25 N 1.30720 * 108.94479 * 359.58957 * 24 23 22 26 26 C 1.53777 * 113.61997 * 204.99911 * 10 9 7 27 27 H 0.97002 * 119.99813 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00380 * 359.97438 * 9 7 2 29 29 H 1.09001 * 113.61214 * 25.44623 * 12 10 9 30 30 H 1.08998 * 113.61325 * 254.54648 * 12 10 9 31 31 H 0.97003 * 119.99681 * 72.49741 * 15 13 12 32 32 H 1.09000 * 109.46961 * 59.99824 * 18 16 15 33 33 H 1.09003 * 109.46874 * 299.99946 * 18 16 15 34 34 H 1.09000 * 109.47170 * 60.00065 * 19 18 16 35 35 H 1.09003 * 109.47211 * 299.99853 * 19 18 16 36 36 H 1.09009 * 109.47058 * 60.00005 * 20 19 18 37 37 H 1.09002 * 109.47378 * 300.00457 * 20 19 18 38 38 H 1.07997 * 125.95719 * 0.08180 * 22 21 20 39 39 H 1.08002 * 125.53021 * 179.85853 * 24 23 22 40 40 H 1.09000 * 113.61784 * 105.38222 * 26 10 9 41 41 H 1.09003 * 113.60896 * 334.48303 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0656 -3.5639 -0.4060 12 6 2.0010 -4.4032 1.3428 13 6 1.8496 -5.6981 0.5272 14 1 2.7995 -6.1644 0.2655 15 7 0.8904 -6.6447 1.1016 16 6 1.3293 -7.7723 1.6950 17 8 2.5184 -8.0037 1.7532 18 6 0.3426 -8.7458 2.2864 19 6 1.0964 -9.9312 2.8926 20 6 0.0947 -10.9193 3.4936 21 7 0.8164 -12.0546 4.0735 22 6 0.7230 -12.5091 5.3352 23 7 1.5217 -13.5384 5.4560 24 6 2.1454 -13.7645 4.3006 25 7 1.7440 -12.8837 3.4221 26 6 1.2601 -4.8288 -0.5960 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 1.1233 -4.1589 1.9411 30 1 2.9297 -4.3511 1.9110 31 1 -0.0607 -6.4599 1.0548 32 1 -0.3279 -9.1034 1.5050 33 1 -0.2377 -8.2481 3.0634 34 1 1.7672 -9.5740 3.6740 35 1 1.6764 -10.4288 2.1154 36 1 -0.5765 -11.2766 2.7125 37 1 -0.4850 -10.4214 4.2709 38 1 0.0946 -12.0993 6.1120 39 1 2.8628 -14.5510 4.1181 40 1 1.5906 -5.1203 -1.5929 41 1 0.1798 -4.7008 -0.5277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690362041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:21 Heat of formation + Delta-G solvation = 53.821092 kcal Electronic energy + Delta-G solvation = -21945.573726 eV Core-core repulsion = 18476.192552 eV Total energy + Delta-G solvation = -3469.381174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.94238 -41.08422 -39.41470 -36.48601 -35.76143 -34.27022 -33.07812 -32.14073 -31.76743 -28.38759 -26.55527 -26.31917 -24.61029 -23.25324 -22.86539 -22.02085 -21.39124 -20.66188 -19.17430 -18.48158 -17.73726 -17.41376 -17.06243 -16.45862 -16.30768 -16.12718 -15.80437 -15.26558 -15.11824 -14.96693 -14.86127 -14.35167 -13.75792 -13.67222 -13.31595 -13.27058 -13.16001 -12.84179 -12.76943 -12.56788 -12.23992 -12.18378 -12.06249 -11.82118 -11.75317 -11.51475 -11.00094 -10.90295 -10.81857 -10.76946 -10.57090 -9.96010 -8.99176 -7.96345 -5.24092 0.73434 1.47526 1.47961 1.48433 1.56982 1.67980 2.03522 2.28469 2.56668 3.35355 3.51930 3.56146 3.68220 3.74673 3.84286 3.90417 3.97250 4.13848 4.15166 4.24110 4.30865 4.36555 4.50117 4.56118 4.67813 4.78706 4.88197 4.90298 5.02310 5.14415 5.14711 5.24672 5.33188 5.39955 5.49339 5.50941 5.69401 5.98417 6.26346 6.64656 7.15009 7.32965 7.33186 8.08520 8.32446 9.26524 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.047280 B = 0.001979 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.075950 B =14145.356471 C =14182.505915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.722 5.722 10 C 0.148 3.852 11 H 0.074 0.926 12 C -0.169 4.169 13 C 0.135 3.865 14 H 0.099 0.901 15 N -0.706 5.706 16 C 0.504 3.496 17 O -0.596 6.596 18 C -0.126 4.126 19 C -0.108 4.108 20 C 0.128 3.872 21 N -0.383 5.383 22 C 0.259 3.741 23 N -0.584 5.584 24 C 0.187 3.813 25 N -0.356 5.356 26 C -0.138 4.138 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.416 0.584 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.263 0.737 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 -24.580 7.959 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.360 5.360 10 C 0.037 3.963 11 H 0.092 0.908 12 C -0.211 4.211 13 C 0.028 3.972 14 H 0.117 0.883 15 N -0.356 5.356 16 C 0.292 3.708 17 O -0.477 6.477 18 C -0.166 4.166 19 C -0.147 4.147 20 C 0.007 3.993 21 N -0.173 5.173 22 C -0.037 4.037 23 N -0.312 5.312 24 C -0.116 4.116 25 N -0.185 5.185 26 C -0.178 4.178 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.166 0.834 38 H 0.279 0.721 39 H 0.250 0.750 40 H 0.098 0.902 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.181 -24.690 7.492 26.138 hybrid contribution -0.087 1.410 -0.037 1.413 sum -4.267 -23.280 7.455 24.814 Atomic orbital electron populations 1.69789 1.06414 1.26074 1.59399 1.25522 0.96418 1.00944 1.03704 0.85184 0.77690 0.79731 0.77420 1.21395 1.22155 1.19758 1.19683 0.91510 0.85474 1.41177 0.90812 1.42471 1.05383 1.00679 1.87486 1.21671 0.95660 0.84287 0.94669 0.90771 1.24149 1.01119 0.96469 0.99354 1.22054 0.93700 0.87077 0.94321 0.88336 1.45938 1.10905 1.20868 1.57937 1.21481 0.89900 0.82251 0.77138 1.90706 1.19972 1.77071 1.59983 1.21615 0.97355 0.94019 1.03634 1.21421 0.97832 0.94998 1.00445 1.22190 0.92848 0.82475 1.01773 1.50761 1.32013 1.25009 1.09541 1.26970 0.97105 0.91344 0.88312 1.70534 1.14177 1.19293 1.27198 1.26491 0.99773 0.98801 0.86530 1.78006 1.09625 1.07583 1.23265 1.23655 1.01121 0.94823 0.98194 0.93971 0.79089 0.90680 0.93289 0.74632 0.85249 0.84877 0.93007 0.93116 0.87513 0.83404 0.72134 0.74971 0.90247 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -13.46 9.97 84.03 0.84 -12.63 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.72 -35.05 5.40 -320.44 -1.73 -36.78 16 10 C 0.15 5.57 4.48 45.52 0.20 5.77 16 11 H 0.07 2.85 8.10 -2.38 -0.02 2.83 16 12 C -0.17 -5.66 7.68 31.12 0.24 -5.42 16 13 C 0.13 3.71 4.24 45.52 0.19 3.90 16 14 H 0.10 3.00 7.46 -2.38 -0.02 2.98 16 15 N -0.71 -14.68 5.35 -440.05 -2.36 -17.04 16 16 C 0.50 11.11 7.83 87.66 0.69 11.80 16 17 O -0.60 -19.68 15.58 -3.03 -0.05 -19.73 16 18 C -0.13 -1.26 5.70 29.85 0.17 -1.09 16 19 C -0.11 -1.53 4.71 30.59 0.14 -1.39 16 20 C 0.13 0.89 6.55 86.38 0.57 1.45 16 21 N -0.38 -5.54 3.69 -352.05 -1.30 -6.84 16 22 C 0.26 3.14 12.63 180.36 2.28 5.42 16 23 N -0.58 -10.92 11.19 -204.00 -2.28 -13.20 16 24 C 0.19 3.53 13.03 180.77 2.36 5.88 16 25 N -0.36 -7.59 12.57 -61.24 -0.77 -8.36 16 26 C -0.14 -3.97 7.58 31.12 0.24 -3.73 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.38 19.24 7.92 -92.71 -0.73 18.51 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.42 6.01 8.73 -92.71 -0.81 5.20 16 32 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.15 -0.26 8.09 -2.39 -0.02 -0.28 16 38 H 0.26 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -81.98 353.33 1.70 -80.27 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.49 Total: 25.07 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 8.38 Total: 6.30 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -8.16 Total: -139.47 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.98 1.70 -80.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690362041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.096 kcal (2) G-P(sol) polarization free energy of solvation -81.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds