Wall clock time and date at job start Tue Mar 31 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.34775 * 119.99673 * 179.97438 * 5 4 2 7 7 O 1.21615 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.43205 * 120.00063 * 180.02562 * 6 5 4 9 9 C 5.86722 * 153.26963 * 127.76044 * 2 1 3 10 10 C 7.21531 * 158.36855 * 130.33894 * 2 1 3 11 11 C 1.52996 * 117.50025 * 250.91793 * 10 9 8 12 12 C 1.52996 * 117.50246 * 182.25656 * 10 9 8 13 13 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 14 14 C 1.46898 * 110.99888 * 85.00162 * 13 2 1 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 2 16 16 O 1.21288 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99549 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00062 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99229 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00252 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00305 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47102 * 89.99542 * 22 20 18 24 24 H 1.48493 * 109.47421 * 209.99846 * 22 20 18 25 25 H 1.48497 * 109.46772 * 330.00472 * 22 20 18 26 26 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 28 28 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 30 30 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 31 31 H 0.96995 * 120.00227 * 359.97438 * 5 4 2 32 32 H 1.09011 * 115.55102 * 36.58487 * 10 9 8 33 33 H 1.09001 * 117.49803 * 359.97438 * 11 10 9 34 34 H 1.09000 * 117.50367 * 145.01946 * 11 10 9 35 35 H 1.08996 * 117.50619 * 214.98074 * 12 10 9 36 36 H 1.09006 * 117.49415 * 359.97438 * 12 10 9 37 37 H 1.00902 * 110.99923 * 208.96103 * 13 2 1 38 38 H 1.08995 * 109.47296 * 299.99911 * 14 13 2 39 39 H 1.08997 * 109.47334 * 60.00212 * 14 13 2 40 40 H 0.97003 * 120.00664 * 0.02562 * 17 15 14 41 41 H 0.97002 * 120.00635 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1730 -1.4285 2.1910 7 8 3.5683 -1.8841 3.1428 8 6 5.6002 -1.5309 2.1339 9 6 6.7702 -1.6160 2.0864 10 6 8.2371 -1.7217 2.0274 11 6 9.0243 -1.3336 3.2806 12 6 9.0408 -0.4201 2.0525 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5872 -0.5217 -3.5561 16 8 2.8675 -1.6986 -3.4703 17 7 2.7271 0.1204 -4.7327 18 6 3.1869 -0.5566 -5.8327 19 1 3.4365 -1.6046 -5.7563 20 6 3.3306 0.1052 -7.0459 21 7 3.7708 -0.5438 -8.1004 22 14 2.8982 1.9177 -7.1782 23 1 4.0987 2.7366 -6.8726 24 1 2.4330 2.2163 -8.5564 25 1 1.8192 2.2409 -6.2105 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7516 -0.1585 2.1369 30 1 1.6053 -1.7199 1.2950 31 1 3.9823 -0.4629 0.4315 32 1 8.6255 -2.5415 1.4228 33 1 8.4559 -0.9996 4.1486 34 1 9.9308 -1.8976 3.5004 35 1 9.9581 -0.3834 1.4648 36 1 8.4831 0.5146 2.1122 37 1 2.9172 -1.1206 -1.0288 38 1 1.0870 0.6165 -2.5525 39 1 2.7588 1.0462 -2.1182 40 1 2.5033 1.0618 -4.8013 41 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690572691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:21 Heat of formation + Delta-G solvation = 12.726478 kcal Electronic energy + Delta-G solvation = -22101.948512 eV Core-core repulsion = 18598.492591 eV Total energy + Delta-G solvation = -3503.455921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98750 -38.62504 -37.95993 -37.11217 -34.26561 -33.86966 -32.91988 -31.72575 -31.00360 -27.24654 -26.55112 -24.56611 -23.75791 -22.86266 -21.98832 -20.78352 -19.53635 -19.06953 -18.32863 -17.02810 -16.55913 -16.27075 -15.84603 -15.50236 -15.30274 -15.00528 -14.70250 -14.41504 -13.89859 -13.24206 -13.00707 -12.94569 -12.75978 -12.72406 -12.46996 -12.23507 -12.06274 -12.00593 -11.88875 -11.63287 -11.57634 -11.24026 -11.00034 -10.63062 -10.61805 -10.43314 -10.02582 -10.01001 -9.61258 -9.37854 -8.64788 -8.29048 -8.21093 -6.34440 -3.86209 1.32844 1.88452 2.78057 2.99427 3.03152 3.12147 3.29580 3.53810 3.68575 3.81680 3.97237 4.07006 4.35019 4.49719 4.50728 4.62812 4.71907 5.01620 5.10679 5.16405 5.17370 5.17992 5.38966 5.42648 5.50607 5.58172 5.62381 5.63152 5.65219 5.77677 5.86241 5.87482 6.03384 6.24083 6.96831 6.97803 7.11936 7.42555 7.54216 7.86024 8.10616 8.55741 8.91287 9.38472 9.78155 10.78617 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.003291 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.728730 B = 8505.819187 C =10279.835475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.050 0.950 4 C 0.118 3.882 5 N -0.718 5.718 6 C 0.639 3.361 7 O -0.524 6.524 8 C -0.222 4.222 9 C -0.046 4.046 10 C -0.067 4.067 11 C -0.161 4.161 12 C -0.159 4.159 13 N -0.664 5.664 14 C 0.046 3.954 15 C 0.448 3.552 16 O -0.563 6.563 17 N -0.589 5.589 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.403 0.597 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.349 0.651 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.370 0.630 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 6.453 20.046 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.068 0.932 4 C -0.005 4.005 5 N -0.370 5.370 6 C 0.426 3.574 7 O -0.401 6.401 8 C -0.225 4.225 9 C -0.048 4.048 10 C -0.084 4.084 11 C -0.198 4.198 12 C -0.196 4.196 13 N -0.300 5.300 14 C -0.086 4.086 15 C 0.234 3.766 16 O -0.445 6.445 17 N -0.229 5.229 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.239 0.761 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.170 0.830 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.203 0.797 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.492 5.076 20.380 21.291 hybrid contribution 0.647 2.139 -0.646 2.326 sum 4.139 7.215 19.734 21.415 Atomic orbital electron populations 1.21741 0.93114 1.03173 1.01629 1.21830 0.97309 0.95930 0.88830 0.93175 1.21709 0.78258 1.02572 0.97977 1.45884 1.08414 1.59426 1.23313 1.14555 0.82345 0.78013 0.82498 1.90857 1.68718 1.47382 1.33124 1.20536 0.92336 1.05251 1.04343 1.21360 0.92084 0.94696 0.96684 1.18956 0.83087 1.01838 1.04566 1.23129 1.01715 1.02930 0.92028 1.23128 1.01599 0.93638 1.01193 1.60119 1.35000 1.32158 1.02708 1.21798 1.01601 0.93890 0.91353 1.19685 0.84684 0.88235 0.84038 1.90578 1.53766 1.15805 1.84371 1.42206 1.60027 1.11094 1.09566 1.19433 1.40140 0.98043 0.85832 0.86273 1.25041 0.97448 0.98433 0.95209 1.69618 1.45034 1.36555 1.00829 0.86669 0.78978 0.85093 0.78630 1.19661 1.20141 1.19467 0.92339 0.91953 0.91320 0.90280 0.89737 0.76110 0.84309 0.88136 0.87316 0.87190 0.88117 0.82961 0.89187 0.93693 0.79694 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.41 37.16 0.35 -1.00 16 2 C 0.07 0.76 2.81 -67.71 -0.19 0.57 16 3 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 4 C 0.12 1.27 5.31 -4.04 -0.02 1.25 16 5 N -0.72 -8.26 4.98 -62.77 -0.31 -8.57 16 6 C 0.64 8.84 7.65 -14.33 -0.11 8.73 16 7 O -0.52 -8.80 17.09 5.26 0.09 -8.71 16 8 C -0.22 -2.88 13.61 -38.83 -0.53 -3.41 16 9 C -0.05 -0.52 13.47 -37.13 -0.50 -1.02 16 10 C -0.07 -0.53 6.21 -93.41 -0.58 -1.11 16 11 C -0.16 -0.98 10.21 -26.70 -0.27 -1.25 16 12 C -0.16 -0.99 10.21 -26.70 -0.27 -1.26 16 13 N -0.66 -9.67 5.92 -107.99 -0.64 -10.31 16 14 C 0.05 0.72 5.97 -4.97 -0.03 0.69 16 15 C 0.45 9.89 7.82 -10.98 -0.09 9.80 16 16 O -0.56 -14.90 15.78 5.55 0.09 -14.81 16 17 N -0.59 -13.71 5.09 -10.96 -0.06 -13.77 16 18 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 19 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 22 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.40 4.21 7.34 -40.82 -0.30 3.91 16 32 H 0.14 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.35 5.33 6.41 -39.29 -0.25 5.07 16 38 H 0.09 1.26 7.44 -51.93 -0.39 0.88 16 39 H 0.05 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -34.71 358.86 -7.60 -42.31 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.74 Total: 14.54 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.49 Total: 4.34 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.23 Total: -57.36 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.18 Total: -23.52 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.71 -7.60 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690572691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.037 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds