Wall clock time and date at job start Tue Mar 31 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 N 1.46498 * 109.47043 * 174.99892 * 4 2 1 6 6 C 1.34775 * 119.99673 * 179.97438 * 5 4 2 7 7 O 1.21615 * 120.00340 * 359.97438 * 6 5 4 8 8 C 1.43205 * 120.00063 * 180.02562 * 6 5 4 9 9 C 5.86722 * 153.26963 * 127.76044 * 2 1 3 10 10 C 7.21531 * 158.36855 * 130.33894 * 2 1 3 11 11 C 1.52996 * 117.50025 * 250.91793 * 10 9 8 12 12 C 1.52996 * 117.50246 * 182.25656 * 10 9 8 13 13 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 14 14 C 1.46898 * 110.99888 * 85.00162 * 13 2 1 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 2 16 16 O 1.21288 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99549 * 179.97438 * 15 14 13 18 18 C 1.37103 * 120.00062 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99229 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00252 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00305 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47102 * 89.99542 * 22 20 18 24 24 H 1.48493 * 109.47421 * 209.99846 * 22 20 18 25 25 H 1.48497 * 109.46772 * 330.00472 * 22 20 18 26 26 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 28 28 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 30 30 H 1.08999 * 109.47502 * 54.99555 * 4 2 1 31 31 H 0.96995 * 120.00227 * 359.97438 * 5 4 2 32 32 H 1.09011 * 115.55102 * 36.58487 * 10 9 8 33 33 H 1.09001 * 117.49803 * 359.97438 * 11 10 9 34 34 H 1.09000 * 117.50367 * 145.01946 * 11 10 9 35 35 H 1.08996 * 117.50619 * 214.98074 * 12 10 9 36 36 H 1.09006 * 117.49415 * 359.97438 * 12 10 9 37 37 H 1.00902 * 110.99923 * 208.96103 * 13 2 1 38 38 H 1.08995 * 109.47296 * 299.99911 * 14 13 2 39 39 H 1.08997 * 109.47334 * 60.00212 * 14 13 2 40 40 H 0.97003 * 120.00664 * 0.02562 * 17 15 14 41 41 H 0.97002 * 120.00635 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1730 -1.4285 2.1910 7 8 3.5683 -1.8841 3.1428 8 6 5.6002 -1.5309 2.1339 9 6 6.7702 -1.6160 2.0864 10 6 8.2371 -1.7217 2.0274 11 6 9.0243 -1.3336 3.2806 12 6 9.0408 -0.4201 2.0525 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5872 -0.5217 -3.5561 16 8 2.8675 -1.6986 -3.4703 17 7 2.7271 0.1204 -4.7327 18 6 3.1869 -0.5566 -5.8327 19 1 3.4365 -1.6046 -5.7563 20 6 3.3306 0.1052 -7.0459 21 7 3.7708 -0.5438 -8.1004 22 14 2.8982 1.9177 -7.1782 23 1 4.0987 2.7366 -6.8726 24 1 2.4330 2.2163 -8.5564 25 1 1.8192 2.2409 -6.2105 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7516 -0.1585 2.1369 30 1 1.6053 -1.7199 1.2950 31 1 3.9823 -0.4629 0.4315 32 1 8.6255 -2.5415 1.4228 33 1 8.4559 -0.9996 4.1486 34 1 9.9308 -1.8976 3.5004 35 1 9.9581 -0.3834 1.4648 36 1 8.4831 0.5146 2.1122 37 1 2.9172 -1.1206 -1.0288 38 1 1.0870 0.6165 -2.5525 39 1 2.7588 1.0462 -2.1182 40 1 2.5033 1.0618 -4.8013 41 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690572691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:21 Heat of formation + Delta-G solvation = -14.538920 kcal Electronic energy + Delta-G solvation = -22103.130828 eV Core-core repulsion = 18598.492591 eV Total energy + Delta-G solvation = -3504.638237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04404 -40.30253 -38.55627 -38.26673 -36.03619 -35.15615 -33.85378 -33.72280 -32.07821 -28.32592 -27.91244 -25.71986 -25.08844 -23.32726 -22.84584 -21.70973 -21.32149 -20.42759 -19.88415 -17.92061 -17.68894 -17.35687 -16.99277 -16.98155 -16.55261 -16.00417 -15.92062 -15.58975 -15.33794 -14.91786 -14.47563 -14.23814 -13.73098 -13.67149 -13.54983 -13.35052 -13.26165 -12.97017 -12.81940 -12.57412 -12.45409 -12.41042 -12.32467 -11.98207 -11.91251 -11.67189 -11.51080 -11.16195 -10.75629 -10.44643 -10.35114 -10.25167 -9.39894 -8.41125 -6.02472 0.34773 1.01678 1.31030 1.36156 1.45594 1.87026 1.95518 2.23571 2.32178 2.66702 2.92606 3.06070 3.15463 3.34054 3.64073 3.78954 3.95783 3.99930 4.09483 4.17501 4.32549 4.39475 4.43439 4.55643 4.59148 4.73434 4.78475 4.93913 4.94518 5.04877 5.05082 5.11577 5.18291 5.45687 5.52937 5.89104 6.01887 6.06534 6.15627 6.28620 6.59510 6.85149 6.88137 7.39619 7.96459 8.76600 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.003291 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.728730 B = 8505.819187 C =10279.835475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.077 0.923 4 C 0.119 3.881 5 N -0.707 5.707 6 C 0.638 3.362 7 O -0.563 6.563 8 C -0.270 4.270 9 C -0.024 4.024 10 C -0.095 4.095 11 C -0.150 4.150 12 C -0.149 4.149 13 N -0.686 5.686 14 C 0.060 3.940 15 C 0.447 3.553 16 O -0.616 6.616 17 N -0.589 5.589 18 C -0.329 4.329 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.229 1.229 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.410 0.590 32 H 0.154 0.846 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.341 0.659 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.390 0.610 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 10.122 21.278 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.004 4.004 5 N -0.358 5.358 6 C 0.426 3.574 7 O -0.444 6.444 8 C -0.273 4.273 9 C -0.027 4.027 10 C -0.112 4.112 11 C -0.186 4.186 12 C -0.186 4.186 13 N -0.322 5.322 14 C -0.072 4.072 15 C 0.235 3.765 16 O -0.500 6.500 17 N -0.231 5.231 18 C -0.459 4.459 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.153 1.153 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.171 0.829 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.226 0.774 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.420 8.775 21.622 23.584 hybrid contribution 0.746 0.852 -0.999 1.511 sum 4.166 9.628 20.622 23.137 Atomic orbital electron populations 1.21761 0.92184 1.02631 1.02988 1.21893 0.97810 0.96607 0.86688 0.90527 1.21767 0.77603 1.02066 0.98936 1.45842 1.08798 1.58388 1.22759 1.14711 0.82788 0.77573 0.82323 1.90819 1.69580 1.49328 1.34677 1.20624 0.92691 1.07421 1.06599 1.22166 0.92994 0.92709 0.94802 1.19325 0.81235 1.03772 1.06884 1.23251 1.01732 1.02448 0.91216 1.23251 1.01586 0.92509 1.01250 1.60126 1.34842 1.33156 1.04039 1.21736 1.03434 0.93724 0.88265 1.21019 0.82319 0.87923 0.85287 1.90559 1.55360 1.18663 1.85436 1.42019 1.60473 1.11851 1.08767 1.18999 1.42328 0.96070 0.88468 0.92840 1.26139 0.96364 1.05120 0.93791 1.69807 1.46314 1.39649 1.01823 0.85350 0.80276 0.76365 0.79431 1.17981 1.20234 1.15269 0.89802 0.91737 0.92891 0.88651 0.91432 0.75379 0.82851 0.88719 0.85022 0.85186 0.88523 0.83846 0.86516 0.89794 0.77383 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.41 71.98 0.68 -1.61 16 2 C 0.08 1.47 2.81 44.91 0.13 1.60 16 3 H 0.08 1.09 7.80 -2.39 -0.02 1.07 16 4 C 0.12 2.42 5.31 86.38 0.46 2.88 16 5 N -0.71 -15.97 4.98 -470.74 -2.34 -18.31 16 6 C 0.64 18.12 7.65 85.49 0.65 18.77 16 7 O -0.56 -19.59 17.09 -4.08 -0.07 -19.66 16 8 C -0.27 -7.19 13.61 30.02 0.41 -6.78 16 9 C -0.02 -0.54 13.47 31.12 0.42 -0.13 16 10 C -0.09 -1.38 6.21 -12.60 -0.08 -1.45 16 11 C -0.15 -1.51 10.21 30.62 0.31 -1.20 16 12 C -0.15 -1.54 10.21 30.62 0.31 -1.22 16 13 N -0.69 -18.76 5.92 -495.58 -2.94 -21.70 16 14 C 0.06 1.69 5.97 85.56 0.51 2.20 16 15 C 0.45 19.49 7.82 87.66 0.69 20.18 16 16 O -0.62 -33.74 15.78 -3.05 -0.05 -33.79 16 17 N -0.59 -26.96 5.09 -306.99 -1.56 -28.52 16 18 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 19 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 20 C -0.02 -0.85 5.50 84.92 0.47 -0.39 16 21 N -0.94 -55.99 13.96 21.66 0.30 -55.69 16 22 Si 0.97 37.76 27.74 68.60 1.90 39.66 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.06 7.45 -2.39 -0.02 1.05 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.41 8.22 7.34 -92.71 -0.68 7.54 16 32 H 0.15 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.34 10.20 6.41 -89.69 -0.58 9.63 16 38 H 0.12 2.73 7.44 -2.39 -0.02 2.71 16 39 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 40 H 0.39 14.53 5.76 -92.71 -0.53 14.00 16 41 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.69 358.86 0.28 -82.40 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.77 Total: 40.97 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.81 Total: 14.63 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.54 Total: -124.22 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.12 Total: -53.45 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.90 Total: 39.66 kcal Total: -82.69 0.28 -82.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690572691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.863 kcal (2) G-P(sol) polarization free energy of solvation -82.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds