Wall clock time and date at job start Tue Mar 31 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46504 * 109.46822 * 184.99666 * 4 2 1 6 6 C 1.34773 * 119.99935 * 179.97438 * 5 4 2 7 7 O 1.21618 * 120.00144 * 0.02562 * 6 5 4 8 8 C 1.43204 * 120.00203 * 180.02562 * 6 5 4 9 9 C 5.86717 * 153.26753 * 232.25001 * 2 1 3 10 10 C 7.21536 * 158.36726 * 229.67304 * 2 1 3 11 11 C 1.53004 * 117.49829 * 292.60646 * 10 9 8 12 12 C 1.53002 * 117.49976 * 223.94976 * 10 9 8 13 13 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 14 14 C 1.46897 * 111.00133 * 275.00091 * 13 2 1 15 15 C 1.50705 * 109.47250 * 180.02562 * 14 13 2 16 16 O 1.21290 * 119.99690 * 359.97438 * 15 14 13 17 17 N 1.34770 * 119.99724 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99768 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00079 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00393 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99836 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00366 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47556 * 59.99993 * 22 20 18 24 24 H 1.48497 * 109.47459 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47105 * 300.00118 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 30 30 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 31 31 H 0.96995 * 120.00028 * 0.02562 * 5 4 2 32 32 H 1.08996 * 115.55116 * 78.27741 * 10 9 8 33 33 H 1.09001 * 117.50144 * 0.02562 * 11 10 9 34 34 H 1.09005 * 117.49687 * 145.01672 * 11 10 9 35 35 H 1.08999 * 117.49661 * 214.97852 * 12 10 9 36 36 H 1.09005 * 117.49573 * 359.97438 * 12 10 9 37 37 H 1.00901 * 110.99931 * 151.04418 * 13 2 1 38 38 H 1.09003 * 109.46826 * 299.99875 * 14 13 2 39 39 H 1.08993 * 109.47326 * 59.99934 * 14 13 2 40 40 H 0.96996 * 120.00663 * 359.97438 * 17 15 14 41 41 H 0.97000 * 120.00384 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1729 -1.4292 -2.1908 7 8 3.5681 -1.8855 -3.1421 8 6 5.6001 -1.5324 -2.1333 9 6 6.7701 -1.6158 -2.0868 10 6 8.2372 -1.7214 -2.0279 11 6 8.8538 -2.2889 -0.7477 12 6 8.9739 -0.7948 -1.0585 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5886 -0.5216 3.5557 16 8 2.8689 -1.6985 3.4699 17 7 2.7297 0.1208 4.7321 18 6 3.1896 -0.5563 5.8319 19 1 3.4392 -1.6044 5.7556 20 6 3.3356 0.1059 7.0447 21 7 3.0324 1.3813 7.1376 22 14 3.9629 -0.8164 8.5430 23 1 5.3185 -1.3533 8.2622 24 1 4.0269 0.1087 9.7028 25 1 3.0412 -1.9381 8.8555 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7516 -0.1584 -2.1370 31 1 3.9824 -0.4628 -0.4317 32 1 8.7298 -1.9572 -2.9711 33 1 8.1731 -2.5844 0.0507 34 1 9.7523 -2.8977 -0.8488 35 1 9.9513 -0.4214 -1.3639 36 1 8.3722 -0.1067 -0.4646 37 1 2.9174 -1.1205 1.0287 38 1 2.7589 1.0461 2.1182 39 1 1.0872 0.6162 2.5525 40 1 2.5059 1.0620 4.8007 41 1 3.1339 1.8436 7.9842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690572692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:23 Heat of formation + Delta-G solvation = -19.160103 kcal Electronic energy + Delta-G solvation = -22185.107727 eV Core-core repulsion = 18680.269100 eV Total energy + Delta-G solvation = -3504.838627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03764 -40.16963 -38.55444 -38.24838 -35.99570 -35.14115 -33.82901 -33.27486 -32.03564 -28.24224 -27.86987 -25.87583 -25.12906 -23.33258 -22.85013 -21.72773 -21.16073 -20.09365 -19.82375 -17.95774 -17.59237 -17.41931 -16.99677 -16.84923 -16.39728 -16.09394 -15.95681 -15.58204 -15.51366 -15.01068 -14.32795 -13.81345 -13.71787 -13.56813 -13.48756 -13.30569 -13.09579 -12.94098 -12.83313 -12.61221 -12.46022 -12.43091 -12.40242 -12.12442 -11.90903 -11.63443 -11.50494 -11.13519 -10.82311 -10.36152 -10.33113 -10.01881 -9.40294 -8.46850 -5.95578 0.30840 1.09386 1.39627 1.42192 1.52639 1.89520 2.04854 2.19788 2.28777 2.82529 2.99180 3.06487 3.20614 3.46554 3.63508 3.79343 3.96994 3.98716 4.14365 4.23611 4.35486 4.39930 4.44614 4.58012 4.59762 4.74644 4.77306 4.93670 4.93694 5.03983 5.06020 5.10720 5.18187 5.40582 5.44132 5.86334 6.06421 6.07393 6.15021 6.30028 6.59836 6.84672 7.12455 7.55946 8.11409 8.70159 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.003548 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.258552 B = 7889.503958 C =10107.944374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.707 5.707 6 C 0.638 3.362 7 O -0.564 6.564 8 C -0.271 4.271 9 C -0.025 4.025 10 C -0.086 4.086 11 C -0.157 4.157 12 C -0.149 4.149 13 N -0.681 5.681 14 C 0.064 3.936 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.571 5.571 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.409 0.591 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.341 0.659 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.397 0.603 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.062 2.619 -16.149 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 H 0.089 0.911 4 C -0.002 4.002 5 N -0.359 5.359 6 C 0.426 3.574 7 O -0.444 6.444 8 C -0.273 4.273 9 C -0.027 4.027 10 C -0.103 4.103 11 C -0.194 4.194 12 C -0.185 4.185 13 N -0.316 5.316 14 C -0.068 4.068 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.208 5.208 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.210 4.210 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.245 0.755 32 H 0.178 0.822 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.161 0.839 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.231 0.769 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.149 1.434 -16.526 17.691 hybrid contribution 0.846 0.600 1.048 1.475 sum 6.995 2.035 -15.477 17.106 Atomic orbital electron populations 1.21750 0.92191 1.02689 1.02847 1.21893 0.97850 0.96472 0.86937 0.91064 1.21749 0.77633 1.02086 0.98752 1.45843 1.08790 1.58422 1.22807 1.14713 0.82832 0.77556 0.82286 1.90818 1.69559 1.49402 1.34649 1.20615 0.92689 1.08205 1.05830 1.22196 0.92999 0.92447 0.95092 1.19332 0.82201 1.09967 0.98837 1.23248 1.03114 0.97566 0.95467 1.23258 1.02379 0.93249 0.99659 1.60137 1.34671 1.32981 1.03844 1.21628 1.02721 0.93619 0.88859 1.20891 0.83304 0.87982 0.85495 1.90504 1.56727 1.18275 1.85608 1.41906 1.58168 1.12566 1.08162 1.19623 1.42284 0.95941 0.88678 0.90419 1.25999 0.97169 0.96582 1.01265 1.69658 1.48467 1.09624 1.28223 0.85023 0.78751 0.77847 0.76946 1.19611 1.19448 1.19900 0.92098 0.89758 0.92651 0.91219 0.88671 0.75491 0.82226 0.89521 0.84818 0.84634 0.88957 0.83887 0.90986 0.87467 0.76908 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.42 71.98 0.68 -1.91 16 2 C 0.08 1.63 2.81 44.92 0.13 1.76 16 3 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 4 C 0.12 2.64 5.31 86.38 0.46 3.10 16 5 N -0.71 -16.93 4.98 -470.74 -2.34 -19.27 16 6 C 0.64 18.66 7.65 85.49 0.65 19.32 16 7 O -0.56 -20.01 17.09 -4.09 -0.07 -20.08 16 8 C -0.27 -7.35 13.61 30.02 0.41 -6.94 16 9 C -0.02 -0.57 13.47 31.13 0.42 -0.15 16 10 C -0.09 -1.24 6.21 -12.60 -0.08 -1.32 16 11 C -0.16 -2.01 10.21 30.62 0.31 -1.70 16 12 C -0.15 -1.72 10.21 30.62 0.31 -1.41 16 13 N -0.68 -20.20 5.93 -495.57 -2.94 -23.14 16 14 C 0.06 2.04 5.97 85.56 0.51 2.55 16 15 C 0.44 20.12 7.82 87.66 0.69 20.81 16 16 O -0.62 -34.15 15.78 -3.06 -0.05 -34.19 16 17 N -0.57 -28.54 5.29 -306.98 -1.62 -30.16 16 18 C -0.34 -18.79 9.68 84.04 0.81 -17.97 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 21 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 22 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.41 8.87 7.34 -92.71 -0.68 8.19 16 32 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.34 10.79 6.41 -89.69 -0.58 10.22 16 38 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 39 H 0.11 3.08 7.44 -2.39 -0.02 3.06 16 40 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 41 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -73.38 361.99 0.15 -73.23 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.91 Total: 41.61 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.77 Total: 16.07 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -6.62 Total: -120.93 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.12 Total: -54.27 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -73.38 0.15 -73.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690572692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.065 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds