Wall clock time and date at job start Tue Mar 31 2020 03:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 125.96236 * 2 1 4 4 C 1.33238 * 109.83047 * 180.12002 * 3 2 1 5 5 C 1.50703 * 125.52928 * 179.85320 * 4 3 2 6 6 C 1.50702 * 109.46717 * 269.72186 * 5 4 3 7 7 O 1.21273 * 120.00445 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99376 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.65018 * 359.95742 * 8 6 5 10 10 C 1.54327 * 107.27126 * 181.09053 * 9 8 6 11 11 C 1.55155 * 102.94065 * 22.19595 * 10 9 8 12 12 H 1.09007 * 111.03795 * 82.58410 * 11 10 9 13 13 C 1.53001 * 111.00412 * 206.41899 * 11 10 9 14 14 N 1.46490 * 109.47264 * 287.19518 * 13 11 10 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47425 * 125.64832 * 179.97438 * 8 6 5 24 24 N 1.30713 * 108.94626 * 359.59212 * 4 3 2 25 25 N 1.34428 * 125.95869 * 179.66832 * 2 1 3 26 26 H 0.96994 * 126.82744 * 0.02562 * 25 2 1 27 27 H 1.09006 * 109.47592 * 270.32831 * 1 2 3 28 28 H 1.09001 * 109.47422 * 30.33315 * 1 2 3 29 29 H 1.09008 * 109.47288 * 150.32785 * 1 2 3 30 30 H 1.08991 * 109.46841 * 149.71986 * 5 4 3 31 31 H 1.09004 * 109.46641 * 29.71937 * 5 4 3 32 32 H 1.09000 * 109.88473 * 300.51310 * 9 8 6 33 33 H 1.09001 * 109.88122 * 61.52693 * 9 8 6 34 34 H 1.08996 * 110.72473 * 263.83287 * 10 9 8 35 35 H 1.09001 * 110.71926 * 140.55777 * 10 9 8 36 36 H 1.09003 * 109.46836 * 167.19226 * 13 11 10 37 37 H 1.08999 * 109.47071 * 47.20265 * 13 11 10 38 38 H 0.97000 * 120.00577 * 0.02562 * 14 13 11 39 39 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 40 40 H 1.09001 * 110.36548 * 36.99406 * 23 8 6 41 41 H 1.09001 * 110.46206 * 274.72271 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0026 5 6 4.7372 1.6236 -0.0066 6 6 5.1320 1.9280 -1.4288 7 8 4.5147 1.4341 -2.3485 8 7 6.1712 2.7491 -1.6785 9 6 7.0016 3.4134 -0.6633 10 6 8.0441 4.2696 -1.4128 11 6 7.3843 4.4846 -2.8005 12 1 6.6700 5.3075 -2.7709 13 6 8.4424 4.7194 -3.8804 14 7 9.0187 6.0562 -3.7169 15 6 9.9933 6.4913 -4.5748 16 1 10.3369 5.8490 -5.3722 17 6 10.5399 7.7578 -4.4196 18 7 10.1216 8.5404 -3.4474 19 14 11.8690 8.3515 -5.5903 20 1 12.2830 9.7267 -5.2127 21 1 13.0408 7.4428 -5.5104 22 1 11.3402 8.3566 -6.9779 23 6 6.6632 3.1303 -3.0150 24 7 3.6194 -0.6168 0.0045 25 7 2.2963 -1.0881 0.0063 26 1 2.0093 -2.0146 0.0113 27 1 -0.3634 0.0059 1.0277 28 1 -0.3634 0.8870 -0.5190 29 1 -0.3634 -0.8930 -0.5088 30 1 5.5739 1.1535 0.5101 31 1 4.4697 2.5496 0.5024 32 1 6.3799 4.0517 -0.0355 33 1 7.5046 2.6664 -0.0492 34 1 8.9860 3.7303 -1.5131 35 1 8.1963 5.2228 -0.9063 36 1 7.9806 4.6407 -4.8647 37 1 9.2290 3.9707 -3.7873 38 1 8.7105 6.6331 -3.0005 39 1 9.4312 8.2322 -2.8398 40 1 5.8291 3.2498 -3.7064 41 1 7.3624 2.3834 -3.3909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690707988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:11 Heat of formation + Delta-G solvation = 59.196029 kcal Electronic energy + Delta-G solvation = -22616.783800 eV Core-core repulsion = 19147.635701 eV Total energy + Delta-G solvation = -3469.148099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.43717 -40.03420 -37.71062 -34.92783 -33.96809 -32.66926 -32.45799 -30.56739 -29.89410 -28.87117 -27.96063 -25.09042 -23.21860 -22.55780 -21.88701 -20.98087 -20.12600 -19.19088 -18.15146 -17.42441 -17.15942 -16.43687 -15.91946 -15.36184 -15.06542 -14.48103 -14.33492 -13.89138 -13.75686 -13.69801 -13.37604 -13.31241 -13.16386 -12.87794 -12.70704 -12.52906 -12.22326 -12.07649 -11.76346 -10.99394 -10.80674 -10.66215 -10.50801 -10.44998 -10.39312 -10.30636 -10.00054 -9.96464 -9.67300 -9.17299 -8.88009 -8.66482 -7.00508 -6.10203 -3.09862 1.28420 2.29118 2.45482 2.56079 3.04337 3.52787 3.56331 3.64022 3.73678 4.19881 4.37489 4.43709 4.66537 4.68584 4.82097 4.87459 4.93862 5.03061 5.07677 5.25191 5.30511 5.35430 5.41678 5.56854 5.62991 5.85559 5.91928 5.94400 5.96392 5.96859 6.08173 6.16497 6.26284 6.36451 6.65584 6.73189 6.76513 7.45208 7.80663 7.81360 8.08007 8.76304 9.23062 10.09380 10.24180 11.38465 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.050958 B = 0.002321 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.337996 B =12063.293824 C =12107.634322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.531 5.531 4 C 0.253 3.747 5 C -0.045 4.045 6 C 0.537 3.463 7 O -0.535 6.535 8 N -0.616 5.616 9 C 0.096 3.904 10 C -0.121 4.121 11 C -0.107 4.107 12 H 0.084 0.916 13 C 0.170 3.830 14 N -0.742 5.742 15 C -0.331 4.331 16 H 0.064 0.936 17 C -0.046 4.046 18 N -0.944 5.944 19 Si 1.080 2.920 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.295 1.295 23 C 0.115 3.885 24 N -0.305 5.305 25 N -0.482 5.482 26 H 0.440 0.560 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.367 0.633 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 -18.538 11.597 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.260 5.260 4 C -0.031 4.031 5 C -0.087 4.087 6 C 0.324 3.676 7 O -0.411 6.411 8 N -0.350 5.350 9 C -0.027 4.027 10 C -0.159 4.159 11 C -0.127 4.127 12 H 0.103 0.897 13 C 0.042 3.958 14 N -0.388 5.388 15 C -0.462 4.462 16 H 0.082 0.918 17 C -0.243 4.243 18 N -0.590 5.590 19 Si 0.911 3.089 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.007 4.007 24 N -0.134 5.134 25 N -0.201 5.201 26 H 0.285 0.715 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.200 0.800 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.743 -17.746 10.578 25.974 hybrid contribution -1.400 -1.828 0.572 2.372 sum -17.143 -19.574 11.150 28.308 Atomic orbital electron populations 1.20400 0.83553 1.05161 1.04514 1.24378 0.96639 0.82737 0.95753 1.70301 1.01255 1.29591 1.24843 1.23246 0.92627 0.89707 0.97482 1.19868 0.93689 0.98924 0.96203 1.19756 0.79034 0.78314 0.90527 1.90729 1.52614 1.51305 1.46499 1.48462 1.30966 1.46738 1.08882 1.22201 0.93077 0.96051 0.91334 1.22657 0.97556 1.00183 0.95502 1.22599 0.98057 0.96160 0.95868 0.89722 1.20484 0.92273 0.88655 0.94393 1.42312 1.46406 1.13111 1.36951 1.20029 1.15025 1.01280 1.09868 0.91759 1.25785 1.03492 0.93018 1.02044 1.70892 1.31774 1.38166 1.18147 0.83234 0.75087 0.76109 0.74447 1.21041 1.22274 1.22267 1.22238 0.98400 0.95966 0.84142 1.77973 0.96742 1.12194 1.26451 1.47923 1.04232 1.10011 1.57908 0.71503 0.88946 0.88231 0.89842 0.86460 0.85948 0.91154 0.91243 0.90163 0.89624 0.95938 0.95833 0.79977 0.93448 0.90400 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.51 36.00 0.38 0.04 16 2 C 0.28 2.71 8.24 -155.70 -1.28 1.42 16 3 N -0.53 -6.97 11.19 -8.16 -0.09 -7.06 16 4 C 0.25 3.38 6.63 -156.85 -1.04 2.34 16 5 C -0.04 -0.50 5.52 -29.03 -0.16 -0.66 16 6 C 0.54 7.82 7.84 -10.98 -0.09 7.73 16 7 O -0.53 -10.03 16.29 5.56 0.09 -9.94 16 8 N -0.62 -8.26 3.33 -170.50 -0.57 -8.82 16 9 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 10 C -0.12 -1.61 6.37 -24.90 -0.16 -1.77 16 11 C -0.11 -1.68 3.05 -88.46 -0.27 -1.95 16 12 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 13 C 0.17 3.37 5.71 -4.05 -0.02 3.34 16 14 N -0.74 -18.44 5.55 -59.91 -0.33 -18.77 16 15 C -0.33 -9.36 9.99 -15.06 -0.15 -9.51 16 16 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 18 N -0.94 -29.05 13.70 55.49 0.76 -28.29 16 19 Si 1.08 25.95 29.92 -169.99 -5.09 20.86 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.30 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.12 1.69 6.38 -2.52 -0.02 1.67 16 24 N -0.30 -3.99 12.80 32.42 0.41 -3.57 16 25 N -0.48 -4.48 7.45 32.62 0.24 -4.24 16 26 H 0.44 2.27 8.96 -182.34 -1.63 0.63 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 38 H 0.37 9.21 6.50 -40.82 -0.27 8.94 16 39 H 0.25 7.65 6.77 -40.82 -0.28 7.37 16 40 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 41 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -38.60 347.20 -9.53 -48.13 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.27 Total: 4.21 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.92 Total: 2.25 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: 0.43 Total: -70.76 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.09 Total: 20.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.60 -9.53 -48.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690707988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.328 kcal (2) G-P(sol) polarization free energy of solvation -38.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds