Wall clock time and date at job start Tue Mar 31 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 125.96236 * 2 1 4 4 C 1.33238 * 109.83047 * 180.12002 * 3 2 1 5 5 C 1.50703 * 125.52928 * 179.85320 * 4 3 2 6 6 C 1.50702 * 109.46717 * 269.72186 * 5 4 3 7 7 O 1.21273 * 120.00445 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99376 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.65018 * 359.95742 * 8 6 5 10 10 C 1.54327 * 107.27126 * 181.09053 * 9 8 6 11 11 C 1.55155 * 102.94065 * 22.19595 * 10 9 8 12 12 H 1.09007 * 111.03795 * 82.58410 * 11 10 9 13 13 C 1.53001 * 111.00412 * 206.41899 * 11 10 9 14 14 N 1.46490 * 109.47264 * 287.19518 * 13 11 10 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47425 * 125.64832 * 179.97438 * 8 6 5 24 24 N 1.30713 * 108.94626 * 359.59212 * 4 3 2 25 25 N 1.34428 * 125.95869 * 179.66832 * 2 1 3 26 26 H 0.96994 * 126.82744 * 0.02562 * 25 2 1 27 27 H 1.09006 * 109.47592 * 270.32831 * 1 2 3 28 28 H 1.09001 * 109.47422 * 30.33315 * 1 2 3 29 29 H 1.09008 * 109.47288 * 150.32785 * 1 2 3 30 30 H 1.08991 * 109.46841 * 149.71986 * 5 4 3 31 31 H 1.09004 * 109.46641 * 29.71937 * 5 4 3 32 32 H 1.09000 * 109.88473 * 300.51310 * 9 8 6 33 33 H 1.09001 * 109.88122 * 61.52693 * 9 8 6 34 34 H 1.08996 * 110.72473 * 263.83287 * 10 9 8 35 35 H 1.09001 * 110.71926 * 140.55777 * 10 9 8 36 36 H 1.09003 * 109.46836 * 167.19226 * 13 11 10 37 37 H 1.08999 * 109.47071 * 47.20265 * 13 11 10 38 38 H 0.97000 * 120.00577 * 0.02562 * 14 13 11 39 39 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 40 40 H 1.09001 * 110.36548 * 36.99406 * 23 8 6 41 41 H 1.09001 * 110.46206 * 274.72271 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0026 5 6 4.7372 1.6236 -0.0066 6 6 5.1320 1.9280 -1.4288 7 8 4.5147 1.4341 -2.3485 8 7 6.1712 2.7491 -1.6785 9 6 7.0016 3.4134 -0.6633 10 6 8.0441 4.2696 -1.4128 11 6 7.3843 4.4846 -2.8005 12 1 6.6700 5.3075 -2.7709 13 6 8.4424 4.7194 -3.8804 14 7 9.0187 6.0562 -3.7169 15 6 9.9933 6.4913 -4.5748 16 1 10.3369 5.8490 -5.3722 17 6 10.5399 7.7578 -4.4196 18 7 10.1216 8.5404 -3.4474 19 14 11.8690 8.3515 -5.5903 20 1 12.2830 9.7267 -5.2127 21 1 13.0408 7.4428 -5.5104 22 1 11.3402 8.3566 -6.9779 23 6 6.6632 3.1303 -3.0150 24 7 3.6194 -0.6168 0.0045 25 7 2.2963 -1.0881 0.0063 26 1 2.0093 -2.0146 0.0113 27 1 -0.3634 0.0059 1.0277 28 1 -0.3634 0.8870 -0.5190 29 1 -0.3634 -0.8930 -0.5088 30 1 5.5739 1.1535 0.5101 31 1 4.4697 2.5496 0.5024 32 1 6.3799 4.0517 -0.0355 33 1 7.5046 2.6664 -0.0492 34 1 8.9860 3.7303 -1.5131 35 1 8.1963 5.2228 -0.9063 36 1 7.9806 4.6407 -4.8647 37 1 9.2290 3.9707 -3.7873 38 1 8.7105 6.6331 -3.0005 39 1 9.4312 8.2322 -2.8398 40 1 5.8291 3.2498 -3.7064 41 1 7.3624 2.3834 -3.3909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690707988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:10 Heat of formation + Delta-G solvation = 30.935191 kcal Electronic energy + Delta-G solvation = -22618.009281 eV Core-core repulsion = 19147.635701 eV Total energy + Delta-G solvation = -3470.373581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.22485 -41.16156 -38.96439 -36.74994 -34.78693 -34.05383 -33.40342 -32.00776 -30.89270 -30.09144 -28.69691 -26.76567 -24.80495 -24.04342 -22.69081 -21.84122 -21.44111 -20.20169 -19.36639 -18.91023 -18.37393 -17.65459 -16.80262 -16.50180 -16.39500 -15.86168 -15.60495 -15.34714 -15.08448 -14.84205 -14.64063 -14.13980 -13.94765 -13.86351 -13.67548 -13.59222 -13.18274 -13.05613 -12.78395 -12.76041 -12.57493 -12.21332 -11.89070 -11.85360 -11.69355 -11.37781 -11.25345 -11.16100 -11.00313 -10.91699 -10.51542 -9.75972 -9.10463 -8.38907 -5.32856 0.50684 1.47697 1.51421 1.60210 1.69556 1.69789 1.86367 2.07308 2.72008 2.95347 3.29195 3.40818 3.48186 3.58331 3.65497 3.81906 3.86017 4.13800 4.25229 4.31504 4.32141 4.36817 4.49533 4.56303 4.68641 4.70960 4.74764 4.78147 4.92788 5.00655 5.02983 5.15325 5.17686 5.20211 5.29403 5.33514 5.59288 6.17161 6.39572 6.51848 6.98713 7.01677 7.10464 8.00770 8.11371 9.13451 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.050958 B = 0.002321 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.337996 B =12063.293824 C =12107.634322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.286 3.714 3 N -0.571 5.571 4 C 0.235 3.765 5 C -0.038 4.038 6 C 0.535 3.465 7 O -0.585 6.585 8 N -0.614 5.614 9 C 0.100 3.900 10 C -0.117 4.117 11 C -0.098 4.098 12 H 0.076 0.924 13 C 0.170 3.830 14 N -0.753 5.753 15 C -0.337 4.337 16 H 0.064 0.936 17 C -0.103 4.103 18 N -0.973 5.973 19 Si 1.128 2.872 20 H -0.292 1.292 21 H -0.277 1.277 22 H -0.280 1.280 23 C 0.121 3.879 24 N -0.337 5.337 25 N -0.474 5.474 26 H 0.456 0.544 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.014 0.986 37 H 0.027 0.973 38 H 0.364 0.636 39 H 0.246 0.754 40 H 0.063 0.937 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.509 -19.665 12.687 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.301 5.301 4 C -0.049 4.049 5 C -0.080 4.080 6 C 0.323 3.677 7 O -0.466 6.466 8 N -0.347 5.347 9 C -0.021 4.021 10 C -0.155 4.155 11 C -0.118 4.118 12 H 0.095 0.905 13 C 0.043 3.957 14 N -0.397 5.397 15 C -0.468 4.468 16 H 0.082 0.918 17 C -0.294 4.294 18 N -0.621 5.621 19 Si 0.952 3.048 20 H -0.218 1.218 21 H -0.203 1.203 22 H -0.206 1.206 23 C -0.003 4.003 24 N -0.167 5.167 25 N -0.194 5.194 26 H 0.304 0.696 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.196 0.804 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.252 -18.933 11.689 27.554 hybrid contribution -1.332 -1.561 0.208 2.062 sum -17.584 -20.494 11.897 29.508 Atomic orbital electron populations 1.20656 0.79998 1.06360 1.06309 1.25260 0.98348 0.81981 0.93563 1.70297 1.01687 1.31457 1.26682 1.23631 0.93404 0.90117 0.97724 1.19967 0.94155 0.99966 0.93880 1.20359 0.78331 0.77462 0.91507 1.90701 1.54287 1.53296 1.48275 1.48503 1.30959 1.46452 1.08796 1.22359 0.92492 0.96689 0.90584 1.22614 0.98096 1.00692 0.94126 1.22364 0.96887 0.96399 0.96101 0.90516 1.20574 0.93185 0.86367 0.95554 1.42470 1.46093 1.14803 1.36378 1.20374 1.15178 1.01315 1.09943 0.91774 1.27195 1.05552 0.93642 1.03045 1.70993 1.32732 1.38999 1.19385 0.82626 0.73391 0.75477 0.73269 1.21793 1.20297 1.20642 1.22044 0.97800 0.95368 0.85068 1.77850 0.98914 1.12425 1.27481 1.47860 1.03203 1.11024 1.57344 0.69564 0.86647 0.88588 0.87030 0.83742 0.83696 0.88710 0.88109 0.90509 0.89814 0.96783 0.95532 0.80397 0.94384 0.91846 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.51 71.23 0.75 0.28 16 2 C 0.29 5.09 8.24 138.22 1.14 6.23 16 3 N -0.57 -14.56 11.19 -179.73 -2.01 -16.58 16 4 C 0.23 6.08 6.63 138.63 0.92 7.00 16 5 C -0.04 -0.78 5.52 29.10 0.16 -0.62 16 6 C 0.53 15.07 7.84 87.66 0.69 15.76 16 7 O -0.59 -22.18 16.29 -3.01 -0.05 -22.23 16 8 N -0.61 -15.56 3.33 -811.74 -2.70 -18.26 16 9 C 0.10 1.87 6.49 86.73 0.56 2.43 16 10 C -0.12 -2.96 6.37 31.78 0.20 -2.75 16 11 C -0.10 -3.03 3.05 -9.40 -0.03 -3.06 16 12 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 13 C 0.17 6.77 5.71 86.38 0.49 7.26 16 14 N -0.75 -37.71 5.55 -343.47 -1.90 -39.62 16 15 C -0.34 -19.06 9.99 84.03 0.84 -18.22 16 16 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 17 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 18 N -0.97 -60.42 13.70 21.65 0.30 -60.12 16 19 Si 1.13 51.93 29.92 68.60 2.05 53.98 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.12 3.51 6.38 86.86 0.55 4.06 16 24 N -0.34 -8.58 12.80 -51.33 -0.66 -9.24 16 25 N -0.47 -8.25 7.45 -50.71 -0.38 -8.62 16 26 H 0.46 4.03 8.96 -213.10 -1.91 2.12 16 27 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.15 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 2.00 7.91 -2.39 -0.02 1.98 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.03 1.06 7.97 -2.39 -0.02 1.04 16 38 H 0.36 18.53 6.50 -92.71 -0.60 17.93 16 39 H 0.25 15.06 6.77 -92.71 -0.63 14.43 16 40 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 41 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 Total: -1.00 -85.08 347.20 0.08 -85.00 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -1.31 Total: 22.82 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.74 Total: 12.86 kcal Atomic # 7 Polarization: -145.08 SS G_CDS: -7.35 Total: -152.43 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -85.08 0.08 -85.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690707988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.934 kcal (2) G-P(sol) polarization free energy of solvation -85.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds