Wall clock time and date at job start Tue Mar 31 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36930 * 119.99882 * 2 1 4 4 H 1.08004 * 119.99717 * 202.34846 * 3 2 1 5 5 C 1.38808 * 120.00265 * 22.34555 * 3 2 1 6 6 N 1.31623 * 120.00155 * 11.34585 * 5 3 2 7 7 Si 1.86800 * 120.00070 * 191.34820 * 5 3 2 8 8 H 1.48502 * 109.47464 * 59.99728 * 7 5 3 9 9 H 1.48503 * 109.47503 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47209 * 299.99907 * 7 5 3 11 11 C 1.46498 * 119.99635 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47057 * 269.99811 * 11 2 1 13 13 N 1.46499 * 109.47382 * 180.02562 * 12 11 2 14 14 C 1.34767 * 120.00243 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00157 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00257 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47043 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.46832 * 180.02562 * 17 16 14 19 19 C 1.38833 * 120.35697 * 89.99945 * 18 17 16 20 20 C 1.38368 * 118.48006 * 179.97438 * 19 18 17 21 21 C 1.38917 * 119.12016 * 359.97438 * 20 19 18 22 22 O 1.35675 * 119.68941 * 179.97438 * 21 20 19 23 23 N 1.32252 * 120.62853 * 0.02854 * 21 20 19 24 24 C 1.31968 * 121.64477 * 359.67684 * 23 21 20 25 25 H 1.09001 * 109.47013 * 274.21328 * 1 2 3 26 26 H 1.08998 * 109.47000 * 34.20768 * 1 2 3 27 27 H 1.08993 * 109.46924 * 154.21100 * 1 2 3 28 28 H 0.96995 * 120.00165 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47118 * 149.99910 * 11 2 1 30 30 H 1.08997 * 109.47366 * 30.00007 * 11 2 1 31 31 H 1.08997 * 109.47076 * 60.00073 * 12 11 2 32 32 H 1.08997 * 109.47193 * 300.00302 * 12 11 2 33 33 H 0.97005 * 119.99910 * 0.02562 * 13 12 11 34 34 H 1.09004 * 109.46435 * 60.00219 * 16 14 13 35 35 H 1.08997 * 109.47056 * 300.00542 * 16 14 13 36 36 H 1.08994 * 109.47469 * 60.00494 * 17 16 14 37 37 H 1.09001 * 109.47032 * 299.99691 * 17 16 14 38 38 H 1.08001 * 120.75442 * 359.97438 * 19 18 17 39 39 H 1.08005 * 120.44079 * 179.97438 * 20 19 18 40 40 H 0.96697 * 114.00055 * 90.00034 * 22 21 20 41 41 H 1.08001 * 119.58389 * 180.31307 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3557 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0047 0.1686 8 1 2.4916 4.2331 -1.2906 9 1 1.4851 5.0735 0.7498 10 1 3.6721 4.0287 0.8178 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1855 -2.9795 1.4413 14 6 3.5229 -3.5633 2.6081 15 8 3.2194 -3.0387 3.6588 16 6 4.2764 -4.8684 2.6076 17 6 4.5315 -5.3106 4.0499 18 6 5.2855 -6.6155 4.0494 19 6 6.6738 -6.6236 4.0494 20 6 7.3265 -7.8436 4.0495 21 6 6.5753 -9.0122 4.0500 22 8 7.2034 -10.2148 4.0495 23 7 5.2537 -8.9636 4.0499 24 6 4.6031 -7.8155 4.0556 25 1 -0.3633 0.0755 1.0249 26 1 -0.3633 0.8499 -0.5777 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0463 3.0776 1.4126 29 1 3.1499 -1.1383 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8416 1.9555 32 1 3.0416 -0.9517 1.9559 33 1 3.4285 -3.3989 0.6010 34 1 5.2286 -4.7379 2.0934 35 1 3.6871 -5.6280 2.0939 36 1 3.5792 -5.4412 4.5638 37 1 5.1207 -4.5511 4.5640 38 1 7.2315 -5.6987 4.0495 39 1 8.4057 -7.8869 4.0491 40 1 7.3861 -10.5635 4.9327 41 1 3.5231 -7.8146 4.0605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690971341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:48 Heat of formation + Delta-G solvation = -26.828629 kcal Electronic energy + Delta-G solvation = -22053.354855 eV Core-core repulsion = 18548.183696 eV Total energy + Delta-G solvation = -3505.171159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.85761 -39.43737 -37.62954 -36.09756 -34.39332 -34.07672 -32.46137 -31.36112 -29.85031 -27.98148 -25.89931 -25.07119 -24.08671 -23.10525 -21.83023 -20.66786 -19.95359 -19.19715 -17.30589 -17.13479 -16.70997 -16.37090 -15.58009 -15.52837 -15.31602 -14.73120 -14.60401 -14.14107 -13.75832 -13.61323 -13.45422 -13.25708 -13.10957 -12.39142 -12.32048 -12.26377 -12.17364 -11.89493 -11.28117 -11.20445 -10.88023 -10.85634 -10.62206 -10.29741 -10.24143 -10.03017 -9.92917 -9.78627 -9.62700 -9.08739 -8.65800 -8.56700 -6.84000 -5.75940 -3.23350 0.59574 0.84838 2.86511 3.09095 3.35094 3.38685 3.42938 3.43811 3.54826 4.28764 4.41678 4.49558 4.56110 4.61055 4.77361 4.90437 5.01930 5.17422 5.27854 5.38946 5.41174 5.57604 5.61378 5.62685 5.85781 5.88781 5.96881 5.99117 6.16587 6.25896 6.67236 6.71185 6.72342 6.96581 7.08353 7.35174 7.54998 7.69937 7.78120 7.79688 8.35274 8.49570 9.19317 9.81374 10.29492 11.29100 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.002190 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.538310 B =12781.632007 C =13037.794017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.726 5.726 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.136 4.136 17 C -0.061 4.061 18 C -0.139 4.139 19 C -0.057 4.057 20 C -0.183 4.183 21 C 0.300 3.700 22 O -0.484 6.484 23 N -0.502 5.502 24 C 0.127 3.873 25 H 0.030 0.970 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.395 0.605 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.399 0.601 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 -21.081 4.658 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.377 5.377 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.176 4.176 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.204 4.204 21 C 0.121 3.879 22 O -0.291 6.291 23 N -0.220 5.220 24 C -0.030 4.030 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.257 0.743 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.149 -21.278 4.852 24.506 hybrid contribution 1.057 1.373 0.069 1.734 sum 12.206 -19.905 4.921 23.862 Atomic orbital electron populations 1.20849 0.82140 0.95742 0.99483 1.43916 1.02071 1.00345 1.85586 1.19167 0.98124 0.85249 1.36478 0.91290 1.25076 0.97669 0.98715 0.98111 1.70057 1.17745 1.27381 1.39870 0.86290 0.78555 0.83532 0.77862 1.21001 1.21564 1.20882 1.20992 0.96326 0.88923 0.92221 1.22516 0.95726 0.82866 1.02074 1.46227 1.58158 1.25352 1.07930 1.20575 0.79867 0.86373 0.84207 1.90724 1.54850 1.65290 1.31276 1.21669 1.01626 0.95817 0.98496 1.20264 1.01052 0.92490 0.96110 1.21013 0.94565 0.97079 1.01402 1.21504 0.93825 0.98168 0.94783 1.22118 1.01800 0.92271 1.04180 1.19206 0.87163 0.85291 0.96227 1.84785 1.76633 1.33774 1.33940 1.67185 1.09933 1.31097 1.13797 1.22509 1.00259 0.85814 0.94420 0.95215 0.93431 0.98390 0.93548 0.93373 0.94003 0.92224 0.91383 0.77182 0.88978 0.88885 0.89505 0.89666 0.84090 0.84193 0.74343 0.82105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 9.01 59.85 0.54 4.52 16 2 N -0.60 -14.80 2.93 -181.12 -0.53 -15.33 16 3 C -0.26 -7.09 9.67 -15.06 -0.15 -7.24 16 4 H 0.07 1.82 7.84 -52.48 -0.41 1.41 16 5 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -26.45 10.59 55.49 0.59 -25.86 16 7 Si 0.91 21.79 29.57 -169.99 -5.03 16.77 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.14 2.79 5.82 -4.04 -0.02 2.76 16 12 C 0.09 1.79 6.00 -4.04 -0.02 1.76 16 13 N -0.73 -10.26 5.56 -60.29 -0.33 -10.59 16 14 C 0.50 7.18 7.83 -10.99 -0.09 7.09 16 15 O -0.54 -10.28 15.98 5.55 0.09 -10.20 16 16 C -0.14 -1.24 5.68 -27.88 -0.16 -1.40 16 17 C -0.06 -0.55 4.66 -27.88 -0.13 -0.68 16 18 C -0.14 -1.14 5.15 -104.47 -0.54 -1.68 16 19 C -0.06 -0.42 9.85 -39.31 -0.39 -0.81 16 20 C -0.18 -1.38 10.04 -39.28 -0.39 -1.77 16 21 C 0.30 2.81 7.74 -17.12 -0.13 2.68 16 22 O -0.48 -3.90 13.56 -18.73 -0.25 -4.16 16 23 N -0.50 -5.36 10.39 -13.33 -0.14 -5.50 16 24 C 0.13 1.14 10.85 -17.56 -0.19 0.95 16 25 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 26 H 0.05 1.25 7.19 -51.93 -0.37 0.87 16 27 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 30 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.40 1.18 9.06 45.56 0.41 1.59 16 41 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -35.24 352.20 -7.33 -42.57 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.27 Total: 0.81 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.76 Total: 6.18 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.42 Total: -57.28 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.17 Total: -14.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.24 -7.33 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690971341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.739 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds