Wall clock time and date at job start Tue Mar 31 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36930 * 119.99882 * 2 1 4 4 H 1.08004 * 119.99717 * 202.34846 * 3 2 1 5 5 C 1.38808 * 120.00265 * 22.34555 * 3 2 1 6 6 N 1.31623 * 120.00155 * 11.34585 * 5 3 2 7 7 Si 1.86800 * 120.00070 * 191.34820 * 5 3 2 8 8 H 1.48502 * 109.47464 * 59.99728 * 7 5 3 9 9 H 1.48503 * 109.47503 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47209 * 299.99907 * 7 5 3 11 11 C 1.46498 * 119.99635 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47057 * 269.99811 * 11 2 1 13 13 N 1.46499 * 109.47382 * 180.02562 * 12 11 2 14 14 C 1.34767 * 120.00243 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00157 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00257 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47043 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.46832 * 180.02562 * 17 16 14 19 19 C 1.38833 * 120.35697 * 89.99945 * 18 17 16 20 20 C 1.38368 * 118.48006 * 179.97438 * 19 18 17 21 21 C 1.38917 * 119.12016 * 359.97438 * 20 19 18 22 22 O 1.35675 * 119.68941 * 179.97438 * 21 20 19 23 23 N 1.32252 * 120.62853 * 0.02854 * 21 20 19 24 24 C 1.31968 * 121.64477 * 359.67684 * 23 21 20 25 25 H 1.09001 * 109.47013 * 274.21328 * 1 2 3 26 26 H 1.08998 * 109.47000 * 34.20768 * 1 2 3 27 27 H 1.08993 * 109.46924 * 154.21100 * 1 2 3 28 28 H 0.96995 * 120.00165 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47118 * 149.99910 * 11 2 1 30 30 H 1.08997 * 109.47366 * 30.00007 * 11 2 1 31 31 H 1.08997 * 109.47076 * 60.00073 * 12 11 2 32 32 H 1.08997 * 109.47193 * 300.00302 * 12 11 2 33 33 H 0.97005 * 119.99910 * 0.02562 * 13 12 11 34 34 H 1.09004 * 109.46435 * 60.00219 * 16 14 13 35 35 H 1.08997 * 109.47056 * 300.00542 * 16 14 13 36 36 H 1.08994 * 109.47469 * 60.00494 * 17 16 14 37 37 H 1.09001 * 109.47032 * 299.99691 * 17 16 14 38 38 H 1.08001 * 120.75442 * 359.97438 * 19 18 17 39 39 H 1.08005 * 120.44079 * 179.97438 * 20 19 18 40 40 H 0.96697 * 114.00055 * 90.00034 * 22 21 20 41 41 H 1.08001 * 119.58389 * 180.31307 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3557 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0047 0.1686 8 1 2.4916 4.2331 -1.2906 9 1 1.4851 5.0735 0.7498 10 1 3.6721 4.0287 0.8178 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1855 -2.9795 1.4413 14 6 3.5229 -3.5633 2.6081 15 8 3.2194 -3.0387 3.6588 16 6 4.2764 -4.8684 2.6076 17 6 4.5315 -5.3106 4.0499 18 6 5.2855 -6.6155 4.0494 19 6 6.6738 -6.6236 4.0494 20 6 7.3265 -7.8436 4.0495 21 6 6.5753 -9.0122 4.0500 22 8 7.2034 -10.2148 4.0495 23 7 5.2537 -8.9636 4.0499 24 6 4.6031 -7.8155 4.0556 25 1 -0.3633 0.0755 1.0249 26 1 -0.3633 0.8499 -0.5777 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0463 3.0776 1.4126 29 1 3.1499 -1.1383 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8416 1.9555 32 1 3.0416 -0.9517 1.9559 33 1 3.4285 -3.3989 0.6010 34 1 5.2286 -4.7379 2.0934 35 1 3.6871 -5.6280 2.0939 36 1 3.5792 -5.4412 4.5638 37 1 5.1207 -4.5511 4.5640 38 1 7.2315 -5.6987 4.0495 39 1 8.4057 -7.8869 4.0491 40 1 7.3861 -10.5635 4.9327 41 1 3.5231 -7.8146 4.0605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690971341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:47 Heat of formation + Delta-G solvation = -55.236028 kcal Electronic energy + Delta-G solvation = -22054.586693 eV Core-core repulsion = 18548.183696 eV Total energy + Delta-G solvation = -3506.402996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49178 -40.62659 -38.25586 -37.83272 -35.69841 -35.07503 -33.31358 -33.03278 -30.82107 -29.38466 -27.92489 -26.07966 -24.70582 -24.57966 -22.65756 -22.33942 -21.15911 -19.77026 -18.81028 -18.11725 -17.93723 -17.03503 -16.90956 -16.69178 -16.63212 -15.99301 -15.64142 -15.30657 -15.20178 -14.70539 -14.58117 -14.23390 -14.14625 -14.02658 -13.82334 -13.11442 -13.00629 -12.86964 -12.75790 -12.62978 -12.55630 -12.49070 -12.10719 -12.00386 -11.98286 -11.76518 -10.96260 -10.79380 -10.65453 -10.39013 -10.01741 -9.72753 -8.86069 -7.84828 -5.34392 -0.00751 0.26226 1.46803 1.48858 1.55565 1.72612 2.24672 2.52297 2.56705 2.86346 3.30540 3.60443 3.76225 3.84964 3.93349 3.99599 4.05398 4.24549 4.26436 4.30993 4.40262 4.52551 4.67197 4.70588 4.76982 4.84809 4.94983 5.04091 5.08661 5.18602 5.21301 5.32623 5.35593 5.52740 5.61421 5.63492 5.72372 6.31132 6.64009 6.67517 6.95484 7.12697 7.37853 7.83877 8.26233 9.18797 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.002190 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.538310 B =12781.632007 C =13037.794017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.274 1.274 9 H -0.297 1.297 10 H -0.277 1.277 11 C 0.146 3.854 12 C 0.115 3.885 13 N -0.713 5.713 14 C 0.502 3.498 15 O -0.596 6.596 16 C -0.121 4.121 17 C -0.055 4.055 18 C -0.137 4.137 19 C -0.055 4.055 20 C -0.180 4.180 21 C 0.287 3.713 22 O -0.497 6.497 23 N -0.534 5.534 24 C 0.118 3.882 25 H -0.002 1.002 26 H 0.021 0.979 27 H 0.036 0.964 28 H 0.248 0.752 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.417 0.583 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.418 0.582 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.015 -22.476 3.449 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.396 4.396 4 H 0.094 0.906 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.199 1.199 9 H -0.223 1.223 10 H -0.203 1.203 11 C 0.019 3.981 12 C -0.012 4.012 13 N -0.366 5.366 14 C 0.290 3.710 15 O -0.477 6.477 16 C -0.161 4.161 17 C -0.093 4.093 18 C -0.139 4.139 19 C -0.081 4.081 20 C -0.201 4.201 21 C 0.108 3.892 22 O -0.307 6.307 23 N -0.253 5.253 24 C -0.038 4.038 25 H 0.017 0.983 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.254 0.746 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.279 0.721 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.250 -22.740 3.611 26.566 hybrid contribution 0.470 1.670 0.464 1.796 sum 13.721 -21.070 4.075 25.472 Atomic orbital electron populations 1.20596 0.82500 0.96439 0.97460 1.44175 1.02352 1.01676 1.85684 1.19557 0.98364 0.86411 1.35240 0.90567 1.25887 0.98482 1.02233 0.98622 1.70242 1.19289 1.27629 1.41509 0.85277 0.77530 0.79207 0.78032 1.19932 1.22288 1.20256 1.21146 0.97104 0.87494 0.92384 1.21865 0.94194 0.84176 1.00970 1.45959 1.57502 1.23686 1.09422 1.21511 0.79005 0.87482 0.83028 1.90711 1.56826 1.66974 1.33152 1.21664 1.02333 0.92896 0.99185 1.20149 1.00593 0.92672 0.95919 1.20871 0.94927 0.96162 1.01963 1.21785 0.93568 0.99033 0.93675 1.22325 1.02852 0.91579 1.03313 1.19493 0.87126 0.86178 0.96359 1.84731 1.76426 1.33656 1.35848 1.67178 1.10932 1.32010 1.15169 1.22721 1.00923 0.85762 0.94420 0.98346 0.96022 0.94595 0.94290 0.91689 0.90769 0.95050 0.95374 0.74569 0.86262 0.86337 0.90532 0.90501 0.82007 0.82010 0.72133 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.62 9.01 127.77 1.15 9.77 16 2 N -0.62 -30.29 2.93 -726.94 -2.13 -32.41 16 3 C -0.27 -14.40 9.67 84.03 0.81 -13.59 16 4 H 0.08 3.94 7.84 -2.91 -0.02 3.91 16 5 C -0.06 -3.23 5.13 84.86 0.44 -2.79 16 6 N -0.94 -56.45 10.59 21.65 0.23 -56.22 16 7 Si 0.97 45.15 29.57 68.60 2.03 47.18 16 8 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 C 0.15 5.37 5.82 86.38 0.50 5.87 16 12 C 0.12 4.35 6.00 86.38 0.52 4.87 16 13 N -0.71 -18.78 5.56 -463.07 -2.57 -21.35 16 14 C 0.50 13.55 7.83 87.66 0.69 14.24 16 15 O -0.60 -22.71 15.98 -3.05 -0.05 -22.76 16 16 C -0.12 -1.85 5.68 29.85 0.17 -1.68 16 17 C -0.05 -0.89 4.66 29.85 0.14 -0.75 16 18 C -0.14 -1.97 5.15 -19.76 -0.10 -2.07 16 19 C -0.06 -0.67 9.85 22.44 0.22 -0.44 16 20 C -0.18 -2.27 10.04 22.46 0.23 -2.04 16 21 C 0.29 4.92 7.74 84.79 0.66 5.58 16 22 O -0.50 -7.31 13.56 -89.92 -1.22 -8.53 16 23 N -0.53 -10.80 10.39 -308.94 -3.21 -14.01 16 24 C 0.12 1.95 10.85 84.63 0.92 2.87 16 25 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 26 H 0.02 1.14 7.19 -2.39 -0.02 1.12 16 27 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16 30 H 0.07 2.28 7.86 -2.39 -0.02 2.26 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 7.36 8.47 -92.70 -0.79 6.58 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 37 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 38 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.42 1.93 9.06 -74.06 -0.67 1.26 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -78.82 352.20 -0.99 -79.81 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -0.41 Total: 8.46 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.33 Total: 19.83 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -7.68 Total: -124.00 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.27 Total: -31.28 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -78.82 -0.99 -79.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690971341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.570 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds