Wall clock time and date at job start Tue Mar 31 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46930 * 2 1 4 4 C 1.36936 * 120.00232 * 275.30538 * 3 2 1 5 5 H 1.08001 * 119.99625 * 37.58629 * 4 3 2 6 6 C 1.38811 * 120.00463 * 217.58040 * 4 3 2 7 7 N 1.31619 * 119.99395 * 21.42901 * 6 4 3 8 8 Si 1.86791 * 120.00027 * 201.42745 * 6 4 3 9 9 H 1.48498 * 109.47321 * 90.00215 * 8 6 4 10 10 H 1.48505 * 109.46771 * 209.99778 * 8 6 4 11 11 H 1.48495 * 109.47275 * 330.00091 * 8 6 4 12 12 C 1.46511 * 119.99889 * 95.31249 * 3 2 1 13 13 C 1.53002 * 109.46562 * 269.99589 * 12 3 2 14 14 N 1.46497 * 109.46692 * 180.02562 * 13 12 3 15 15 C 1.34781 * 120.00150 * 179.97438 * 14 13 12 16 16 O 1.21558 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.47824 * 120.00106 * 179.97438 * 15 14 13 18 18 N 1.32866 * 119.78607 * 359.97438 * 17 15 14 19 19 C 1.31374 * 121.69666 * 179.71846 * 18 17 15 20 20 C 1.38762 * 121.06668 * 0.03013 * 19 18 17 21 21 C 1.38305 * 119.44826 * 359.97011 * 20 19 18 22 22 C 1.39340 * 118.43944 * 0.02562 * 21 20 19 23 23 O 1.35641 * 120.54109 * 180.02562 * 22 21 20 24 24 C 1.42894 * 117.00001 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47168 * 299.99907 * 1 2 3 27 27 H 1.08994 * 109.47332 * 60.00073 * 1 2 3 28 28 H 1.08996 * 109.47162 * 239.99994 * 2 1 3 29 29 H 1.09005 * 109.46895 * 119.99904 * 2 1 3 30 30 H 0.97007 * 119.99663 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.46990 * 150.00147 * 12 3 2 32 32 H 1.09000 * 109.47067 * 29.99379 * 12 3 2 33 33 H 1.08995 * 109.47012 * 60.00572 * 13 12 3 34 34 H 1.09000 * 109.47259 * 299.99673 * 13 12 3 35 35 H 0.97005 * 120.00469 * 359.97438 * 14 13 12 36 36 H 1.08005 * 119.46143 * 180.02562 * 19 18 17 37 37 H 1.08012 * 120.27664 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.77929 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.47120 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.47214 * 299.99446 * 24 23 22 41 41 H 1.09000 * 109.47373 * 59.99656 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3026 2.7980 -0.6490 8 14 3.0993 4.2794 -2.6584 9 1 2.5376 5.5068 -2.0394 10 1 4.4550 4.5695 -3.1907 11 1 2.2166 3.8357 -3.7670 12 6 2.3732 2.0327 1.2634 13 6 1.1425 2.7382 1.8366 14 7 1.4975 3.3902 3.0995 15 6 0.5651 4.0778 3.7884 16 8 -0.5704 4.1566 3.3619 17 6 0.9232 4.7352 5.0631 18 7 2.1653 4.6450 5.5260 19 6 2.5259 5.2189 6.6515 20 6 1.6177 5.9466 7.4072 21 6 0.3121 6.0701 6.9679 22 6 -0.0466 5.4527 5.7713 23 8 -1.3152 5.5466 5.3005 24 6 -2.2438 6.2990 6.0837 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.0491 3.4027 -0.7834 31 1 3.1616 2.7641 1.0860 32 1 2.7254 1.2833 1.9722 33 1 0.3541 2.0068 2.0139 34 1 0.7903 3.4876 1.1277 35 1 2.4036 3.3270 3.4401 36 1 3.5456 5.1226 6.9940 37 1 1.9280 6.4136 8.3304 38 1 -0.4126 6.6311 7.5392 39 1 -3.2183 6.2948 5.5952 40 1 -2.3313 5.8508 7.0734 41 1 -1.8902 7.3256 6.1796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691050192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:42 Heat of formation + Delta-G solvation = -35.876221 kcal Electronic energy + Delta-G solvation = -23412.467776 eV Core-core repulsion = 19906.904284 eV Total energy + Delta-G solvation = -3505.563492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.93747 -40.12689 -39.17508 -38.07672 -35.60140 -33.84166 -33.43218 -31.94786 -31.19451 -29.34909 -28.30700 -26.43000 -25.41490 -23.87743 -23.34639 -22.14863 -21.71559 -19.51020 -18.86799 -18.33194 -18.12572 -17.12437 -16.94800 -16.66224 -16.29865 -16.16366 -15.64805 -15.46155 -15.25592 -14.94569 -14.70549 -14.46666 -14.16669 -14.06968 -13.73926 -13.44271 -13.23811 -13.02519 -12.65454 -12.45834 -12.41695 -12.38356 -12.30606 -12.03114 -11.69015 -11.52708 -11.27198 -10.83733 -10.62520 -10.55110 -10.06004 -9.49808 -8.61129 -7.86032 -5.49556 -0.36577 0.22838 1.42825 1.47142 1.53942 1.76401 2.10772 2.21536 2.49896 2.82929 3.18553 3.24647 3.58085 3.72871 3.82413 4.00660 4.18752 4.27997 4.30102 4.34636 4.40650 4.46485 4.50721 4.68662 4.71966 4.81478 4.84188 4.91039 5.00283 5.07700 5.19836 5.28300 5.42051 5.43149 5.56328 5.65334 5.73357 6.21966 6.43632 6.50887 6.84288 7.13310 7.23320 7.81696 8.34707 9.10166 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.003866 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.666197 B = 7240.791389 C = 7599.906430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.273 4.273 5 H 0.054 0.946 6 C -0.029 4.029 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.292 1.292 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.147 3.853 13 C 0.121 3.879 14 N -0.700 5.700 15 C 0.557 3.443 16 O -0.565 6.565 17 C 0.003 3.997 18 N -0.444 5.444 19 C 0.053 3.947 20 C -0.085 4.085 21 C -0.169 4.169 22 C 0.123 3.877 23 O -0.312 6.312 24 C 0.009 3.991 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.413 0.587 36 H 0.198 0.802 37 H 0.193 0.807 38 H 0.183 0.817 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 7.500 21.591 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.403 4.403 5 H 0.072 0.928 6 C -0.227 4.227 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.219 1.219 10 H -0.213 1.213 11 H -0.193 1.193 12 C 0.020 3.980 13 C -0.005 4.005 14 N -0.352 5.352 15 C 0.343 3.657 16 O -0.444 6.444 17 C -0.133 4.133 18 N -0.156 5.156 19 C -0.110 4.110 20 C -0.104 4.104 21 C -0.196 4.196 22 C 0.072 3.928 23 O -0.223 6.223 24 C -0.085 4.085 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.249 0.751 36 H 0.214 0.786 37 H 0.210 0.790 38 H 0.200 0.800 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.442 7.005 20.503 22.604 hybrid contribution -0.268 1.216 -0.257 1.271 sum -6.710 8.220 20.246 22.858 Atomic orbital electron populations 1.22219 0.97965 1.00908 1.00352 1.21018 0.93203 0.85332 0.99315 1.43858 1.76411 1.09707 1.01884 1.19203 1.04449 1.21965 0.94704 0.92823 1.25790 0.93958 1.02818 1.00102 1.70094 1.03584 1.37851 1.43872 0.85514 0.76909 0.79915 0.79630 1.21907 1.21288 1.19320 1.20879 0.94203 0.96661 0.86239 1.21972 1.00102 0.95301 0.83133 1.45837 1.14085 1.52122 1.23108 1.18276 0.84670 0.78725 0.83999 1.90758 1.21316 1.62332 1.70037 1.20383 0.90563 1.04960 0.97437 1.67555 1.14817 1.18092 1.15179 1.23459 1.02541 0.95192 0.89792 1.22765 0.91645 0.94909 1.01115 1.22192 1.00009 1.02484 0.94872 1.20287 0.85427 0.93743 0.93385 1.86395 1.17049 1.69332 1.49516 1.23532 0.92244 0.95854 0.96889 0.91081 0.94258 0.94565 0.94217 0.93112 0.93690 0.90995 0.93859 0.93160 0.95145 0.75082 0.78561 0.78984 0.80012 0.87254 0.90257 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 10.21 71.98 0.73 -5.16 16 2 C 0.14 5.90 6.44 86.38 0.56 6.46 16 3 N -0.60 -30.70 2.43 -701.99 -1.71 -32.41 16 4 C -0.27 -15.42 9.45 84.03 0.79 -14.62 16 5 H 0.05 3.05 7.92 -2.91 -0.02 3.03 16 6 C -0.03 -1.61 4.95 84.86 0.42 -1.19 16 7 N -0.91 -53.25 11.47 21.65 0.25 -53.00 16 8 Si 0.95 45.98 29.60 68.60 2.03 48.01 16 9 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.15 7.14 5.45 86.38 0.47 7.61 16 13 C 0.12 5.57 6.00 86.38 0.52 6.09 16 14 N -0.70 -28.69 5.54 -465.99 -2.58 -31.27 16 15 C 0.56 23.13 7.80 86.78 0.68 23.81 16 16 O -0.57 -27.06 15.14 17.09 0.26 -26.80 16 17 C 0.00 0.09 6.76 41.93 0.28 0.37 16 18 N -0.44 -12.45 9.54 -184.63 -1.76 -14.21 16 19 C 0.05 0.92 11.17 84.89 0.95 1.87 16 20 C -0.08 -0.99 10.10 22.41 0.23 -0.77 16 21 C -0.17 -2.63 9.13 22.55 0.21 -2.42 16 22 C 0.12 3.32 6.71 22.94 0.15 3.47 16 23 O -0.31 -9.10 8.56 -68.57 -0.59 -9.68 16 24 C 0.01 0.14 9.83 113.37 1.11 1.25 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.52 6.64 -2.38 -0.02 1.51 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 29 H 0.05 2.01 7.83 -2.38 -0.02 1.99 16 30 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 31 H 0.07 3.93 5.52 -2.39 -0.01 3.92 16 32 H 0.04 1.94 7.86 -2.39 -0.02 1.92 16 33 H 0.05 2.31 6.64 -2.39 -0.02 2.30 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.41 15.50 7.80 -92.70 -0.72 14.78 16 36 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.19 0.34 8.06 -2.90 -0.02 0.32 16 38 H 0.18 1.35 6.46 -2.91 -0.02 1.33 16 39 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.08 0.80 7.70 -2.39 -0.02 0.78 16 41 H 0.08 0.81 7.70 -2.39 -0.02 0.80 16 Total: -1.00 -77.63 344.75 3.32 -74.31 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.32 Total: 18.29 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 7.10 Total: 26.77 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -5.80 Total: -130.90 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.33 Total: -36.48 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.63 3.32 -74.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691050192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.430 kcal (2) G-P(sol) polarization free energy of solvation -77.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds