Wall clock time and date at job start Tue Mar 31 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46813 * 2 1 4 4 C 1.36931 * 120.00206 * 264.28490 * 3 2 1 5 5 H 1.07996 * 120.00348 * 188.64225 * 4 3 2 6 6 C 1.38818 * 119.99638 * 8.64471 * 4 3 2 7 7 N 1.31618 * 120.00146 * 24.60253 * 6 4 3 8 8 Si 1.86802 * 119.99751 * 204.59834 * 6 4 3 9 9 H 1.48503 * 109.46747 * 85.02669 * 8 6 4 10 10 H 1.48499 * 109.47235 * 205.02520 * 8 6 4 11 11 H 1.48499 * 109.47448 * 325.03169 * 8 6 4 12 12 C 1.46504 * 119.99875 * 84.29225 * 3 2 1 13 13 C 1.52994 * 109.46988 * 269.99680 * 12 3 2 14 14 N 1.46499 * 109.47435 * 180.02562 * 13 12 3 15 15 C 1.34767 * 120.00522 * 180.02562 * 14 13 12 16 16 O 1.21290 * 119.99886 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00665 * 179.97438 * 15 14 13 18 18 N 1.46497 * 109.47469 * 180.02562 * 17 15 14 19 19 C 1.35759 * 119.62677 * 89.99823 * 18 17 15 20 20 C 1.35352 * 120.70289 * 180.27368 * 19 18 17 21 21 C 1.40204 * 119.94243 * 359.43610 * 20 19 18 22 22 C 1.36394 * 119.26637 * 0.58064 * 21 20 19 23 23 C 1.34665 * 119.61843 * 270.01767 * 18 17 15 24 24 O 1.22056 * 119.98824 * 0.02562 * 23 18 17 25 25 H 1.09004 * 109.47486 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47062 * 300.00090 * 1 2 3 27 27 H 1.09009 * 109.47205 * 59.99865 * 1 2 3 28 28 H 1.08996 * 109.47062 * 239.99909 * 2 1 3 29 29 H 1.08995 * 109.46959 * 120.00046 * 2 1 3 30 30 H 0.96997 * 119.99553 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46707 * 149.99537 * 12 3 2 32 32 H 1.09002 * 109.46844 * 29.99398 * 12 3 2 33 33 H 1.09003 * 109.47583 * 59.99939 * 13 12 3 34 34 H 1.09007 * 109.47206 * 300.00048 * 13 12 3 35 35 H 0.97005 * 119.99722 * 359.97438 * 14 13 12 36 36 H 1.09003 * 109.46818 * 59.99335 * 17 15 14 37 37 H 1.09007 * 109.46788 * 300.00169 * 17 15 14 38 38 H 1.07996 * 119.65142 * 0.02562 * 19 18 17 39 39 H 1.07992 * 120.02613 * 179.69855 * 20 19 18 40 40 H 1.07999 * 120.36293 * 180.31395 * 21 20 19 41 41 H 1.08006 * 120.34679 * 179.74191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9874 -1.1799 5 1 2.8470 2.9502 -1.1713 6 6 2.0731 1.3644 -2.3873 7 7 1.0959 0.4858 -2.4602 8 14 3.0770 1.7732 -3.9087 9 1 4.3046 0.9378 -3.9308 10 1 2.2689 1.4977 -5.1238 11 1 3.4557 3.2088 -3.8810 12 6 2.1434 2.1139 1.2625 13 6 0.8338 2.8474 1.5584 14 7 0.9590 3.5805 2.8206 15 6 -0.0784 4.3043 3.2853 16 8 -1.1158 4.3491 2.6584 17 6 0.0502 5.0581 4.5840 18 7 -1.2042 5.7595 4.8679 19 6 -2.1740 5.1365 5.5851 20 6 -3.3435 5.7620 5.8553 21 6 -3.5575 7.0716 5.4027 22 6 -2.5822 7.6957 4.6818 23 6 -1.3823 7.0148 4.4140 24 8 -0.5014 7.5613 3.7698 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 0.8968 0.0508 -3.3040 31 1 2.9552 2.8371 1.1839 32 1 2.3578 1.4132 2.0695 33 1 0.0220 2.1242 1.6370 34 1 0.6193 3.5480 0.7514 35 1 1.7886 3.5445 3.3221 36 1 0.8617 5.7815 4.5053 37 1 0.2650 4.3574 5.3909 38 1 -2.0123 4.1296 5.9405 39 1 -4.1094 5.2544 6.4227 40 1 -4.4861 7.5790 5.6188 41 1 -2.7302 8.7029 4.3209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691052739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:12 Heat of formation + Delta-G solvation = 0.411465 kcal Electronic energy + Delta-G solvation = -23253.617819 eV Core-core repulsion = 19749.627879 eV Total energy + Delta-G solvation = -3503.989940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.56565 -39.23166 -36.98335 -36.47796 -34.69930 -34.34031 -31.48784 -30.15471 -29.82702 -28.88961 -27.09610 -24.26050 -23.90358 -22.98203 -21.75896 -20.70471 -20.12207 -17.85466 -17.47197 -17.45492 -16.78266 -16.51207 -15.52893 -15.28217 -15.20143 -14.87442 -14.49812 -14.27212 -13.99189 -13.56532 -13.40796 -12.93626 -12.57955 -12.34660 -12.12787 -12.06809 -11.96282 -11.89092 -11.43358 -11.11973 -10.78822 -10.64187 -10.55891 -10.36264 -10.06595 -9.94319 -9.83311 -9.62244 -9.41447 -8.71538 -8.40127 -8.11827 -6.96869 -5.79598 -3.12516 0.67120 1.75823 2.32855 2.66011 3.26457 3.39921 3.47392 3.47919 3.65003 4.33127 4.42037 4.48836 4.66368 4.73242 4.86903 5.01841 5.09080 5.18314 5.30246 5.51942 5.75237 5.79290 5.86427 5.90052 6.09798 6.20149 6.32399 6.47877 6.59592 6.64891 6.82483 6.89489 6.90491 7.06785 7.13084 7.62737 7.64391 7.75270 7.92924 8.09483 8.29785 8.34526 9.20348 9.81633 10.25428 11.24039 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.003096 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.936019 B = 9041.997865 C = 9389.385735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 N -0.591 5.591 4 C -0.257 4.257 5 H 0.075 0.925 6 C 0.000 4.000 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.281 1.281 12 C 0.144 3.856 13 C 0.090 3.910 14 N -0.719 5.719 15 C 0.493 3.507 16 O -0.529 6.529 17 C 0.069 3.931 18 N -0.479 5.479 19 C 0.144 3.856 20 C -0.236 4.236 21 C -0.016 4.016 22 C -0.242 4.242 23 C 0.518 3.482 24 O -0.549 6.549 25 H 0.020 0.980 26 H 0.013 0.987 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.004 0.996 30 H 0.253 0.747 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 6.279 20.797 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 N -0.312 5.312 4 C -0.385 4.385 5 H 0.093 0.907 6 C -0.198 4.198 7 N -0.540 5.540 8 Si 0.730 3.270 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.207 1.207 12 C 0.015 3.985 13 C -0.036 4.036 14 N -0.371 5.371 15 C 0.276 3.724 16 O -0.405 6.405 17 C -0.057 4.057 18 N -0.189 5.189 19 C 0.017 3.983 20 C -0.259 4.259 21 C -0.038 4.038 22 C -0.264 4.264 23 C 0.320 3.680 24 O -0.431 6.431 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.177 0.823 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.315 6.531 19.704 21.428 hybrid contribution 0.529 0.108 -0.616 0.819 sum -4.786 6.639 19.088 20.769 Atomic orbital electron populations 1.22438 0.99178 0.98303 1.01222 1.20855 0.92519 0.84186 0.98333 1.44253 1.75495 1.10063 1.01356 1.19302 1.31815 1.03952 0.83455 0.90689 1.24755 0.97728 0.99862 0.97441 1.70160 1.27035 1.31719 1.25051 0.86322 0.80162 0.77939 0.82563 1.21523 1.21898 1.20671 1.20954 0.93605 0.94410 0.89514 1.22807 1.02292 0.95378 0.83082 1.46126 1.15416 1.49801 1.25708 1.20619 0.84693 0.80002 0.87062 1.90769 1.28700 1.62304 1.58741 1.21863 0.87846 0.98343 0.97659 1.45052 1.15356 1.14572 1.43932 1.21922 0.88225 0.97623 0.90518 1.20612 0.98060 0.97077 1.10148 1.21422 0.97955 0.93636 0.90791 1.22089 0.94470 1.02792 1.07053 1.17159 0.89673 0.80271 0.80855 1.90968 1.44891 1.66233 1.41054 0.96111 0.96819 0.89078 0.89262 0.97824 0.93684 0.93123 0.93852 0.91509 0.91445 0.77005 0.85355 0.86204 0.82264 0.83760 0.84862 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.58 37.16 0.36 -3.17 16 2 C 0.17 3.92 5.64 -4.04 -0.02 3.90 16 3 N -0.59 -14.20 2.54 -173.24 -0.44 -14.64 16 4 C -0.26 -6.86 9.70 -15.06 -0.15 -7.01 16 5 H 0.08 1.99 7.93 -52.49 -0.42 1.57 16 6 C 0.00 -0.01 4.91 -17.43 -0.09 -0.09 16 7 N -0.89 -24.93 8.54 55.49 0.47 -24.45 16 8 Si 0.90 21.61 29.62 -169.99 -5.03 16.57 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.14 2.74 5.82 -4.04 -0.02 2.72 16 13 C 0.09 1.70 5.88 -4.05 -0.02 1.68 16 14 N -0.72 -10.23 5.56 -60.29 -0.33 -10.57 16 15 C 0.49 7.51 7.89 -10.99 -0.09 7.42 16 16 O -0.53 -10.80 16.43 5.55 0.09 -10.71 16 17 C 0.07 0.71 5.81 -5.19 -0.03 0.68 16 18 N -0.48 -5.70 2.07 -121.06 -0.25 -5.95 16 19 C 0.14 1.25 10.28 -16.84 -0.17 1.08 16 20 C -0.24 -1.83 10.01 -39.87 -0.40 -2.23 16 21 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 22 C -0.24 -2.86 9.99 -39.38 -0.39 -3.25 16 23 C 0.52 7.71 7.40 -15.44 -0.11 7.59 16 24 O -0.55 -10.30 16.64 4.87 0.08 -10.22 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.29 5.98 -51.93 -0.31 -0.02 16 27 H 0.09 2.43 6.28 -51.92 -0.33 2.11 16 28 H 0.09 2.35 5.87 -51.93 -0.31 2.05 16 29 H 0.00 0.08 7.97 -51.93 -0.41 -0.34 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 33 H 0.07 1.39 5.93 -51.93 -0.31 1.08 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 36 H 0.13 1.31 7.39 -51.93 -0.38 0.93 16 37 H 0.12 0.65 8.01 -51.93 -0.42 0.23 16 38 H 0.16 0.83 8.04 -52.49 -0.42 0.41 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -36.11 342.36 -7.52 -43.63 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.73 Total: 2.40 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -1.54 Total: 8.78 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.55 Total: -55.62 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.17 Total: -20.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.11 -7.52 -43.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691052739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.042 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds