Wall clock time and date at job start Tue Mar 31 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46813 * 2 1 4 4 C 1.36931 * 120.00206 * 264.28490 * 3 2 1 5 5 H 1.07996 * 120.00348 * 188.64225 * 4 3 2 6 6 C 1.38818 * 119.99638 * 8.64471 * 4 3 2 7 7 N 1.31618 * 120.00146 * 24.60253 * 6 4 3 8 8 Si 1.86802 * 119.99751 * 204.59834 * 6 4 3 9 9 H 1.48503 * 109.46747 * 85.02669 * 8 6 4 10 10 H 1.48499 * 109.47235 * 205.02520 * 8 6 4 11 11 H 1.48499 * 109.47448 * 325.03169 * 8 6 4 12 12 C 1.46504 * 119.99875 * 84.29225 * 3 2 1 13 13 C 1.52994 * 109.46988 * 269.99680 * 12 3 2 14 14 N 1.46499 * 109.47435 * 180.02562 * 13 12 3 15 15 C 1.34767 * 120.00522 * 180.02562 * 14 13 12 16 16 O 1.21290 * 119.99886 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00665 * 179.97438 * 15 14 13 18 18 N 1.46497 * 109.47469 * 180.02562 * 17 15 14 19 19 C 1.35759 * 119.62677 * 89.99823 * 18 17 15 20 20 C 1.35352 * 120.70289 * 180.27368 * 19 18 17 21 21 C 1.40204 * 119.94243 * 359.43610 * 20 19 18 22 22 C 1.36394 * 119.26637 * 0.58064 * 21 20 19 23 23 C 1.34665 * 119.61843 * 270.01767 * 18 17 15 24 24 O 1.22056 * 119.98824 * 0.02562 * 23 18 17 25 25 H 1.09004 * 109.47486 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47062 * 300.00090 * 1 2 3 27 27 H 1.09009 * 109.47205 * 59.99865 * 1 2 3 28 28 H 1.08996 * 109.47062 * 239.99909 * 2 1 3 29 29 H 1.08995 * 109.46959 * 120.00046 * 2 1 3 30 30 H 0.96997 * 119.99553 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46707 * 149.99537 * 12 3 2 32 32 H 1.09002 * 109.46844 * 29.99398 * 12 3 2 33 33 H 1.09003 * 109.47583 * 59.99939 * 13 12 3 34 34 H 1.09007 * 109.47206 * 300.00048 * 13 12 3 35 35 H 0.97005 * 119.99722 * 359.97438 * 14 13 12 36 36 H 1.09003 * 109.46818 * 59.99335 * 17 15 14 37 37 H 1.09007 * 109.46788 * 300.00169 * 17 15 14 38 38 H 1.07996 * 119.65142 * 0.02562 * 19 18 17 39 39 H 1.07992 * 120.02613 * 179.69855 * 20 19 18 40 40 H 1.07999 * 120.36293 * 180.31395 * 21 20 19 41 41 H 1.08006 * 120.34679 * 179.74191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3578 1.9874 -1.1799 5 1 2.8470 2.9502 -1.1713 6 6 2.0731 1.3644 -2.3873 7 7 1.0959 0.4858 -2.4602 8 14 3.0770 1.7732 -3.9087 9 1 4.3046 0.9378 -3.9308 10 1 2.2689 1.4977 -5.1238 11 1 3.4557 3.2088 -3.8810 12 6 2.1434 2.1139 1.2625 13 6 0.8338 2.8474 1.5584 14 7 0.9590 3.5805 2.8206 15 6 -0.0784 4.3043 3.2853 16 8 -1.1158 4.3491 2.6584 17 6 0.0502 5.0581 4.5840 18 7 -1.2042 5.7595 4.8679 19 6 -2.1740 5.1365 5.5851 20 6 -3.3435 5.7620 5.8553 21 6 -3.5575 7.0716 5.4027 22 6 -2.5822 7.6957 4.6818 23 6 -1.3823 7.0148 4.4140 24 8 -0.5014 7.5613 3.7698 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 0.8968 0.0508 -3.3040 31 1 2.9552 2.8371 1.1839 32 1 2.3578 1.4132 2.0695 33 1 0.0220 2.1242 1.6370 34 1 0.6193 3.5480 0.7514 35 1 1.7886 3.5445 3.3221 36 1 0.8617 5.7815 4.5053 37 1 0.2650 4.3574 5.3909 38 1 -2.0123 4.1296 5.9405 39 1 -4.1094 5.2544 6.4227 40 1 -4.4861 7.5790 5.6188 41 1 -2.7302 8.7029 4.3209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691052739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:11 Heat of formation + Delta-G solvation = -25.322789 kcal Electronic energy + Delta-G solvation = -23254.733740 eV Core-core repulsion = 19749.627879 eV Total energy + Delta-G solvation = -3505.105861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47397 -40.49481 -38.24721 -37.95690 -35.91930 -35.47775 -33.36197 -31.61613 -30.88690 -30.23884 -28.51218 -25.95414 -24.84709 -24.04948 -23.27126 -22.25584 -21.62018 -18.89844 -18.73002 -18.42692 -18.30093 -17.37737 -16.96634 -16.66118 -16.53136 -16.23240 -15.68400 -15.47811 -15.24959 -15.06230 -14.76915 -14.51319 -13.91875 -13.76446 -13.45080 -13.31114 -13.19519 -12.99791 -12.89513 -12.72506 -12.69253 -12.30801 -12.21946 -11.85534 -11.62511 -11.54262 -11.34533 -11.09840 -10.82925 -10.40021 -10.12838 -8.97973 -8.90172 -7.83994 -5.17325 -0.08561 0.94114 1.44956 1.47466 1.48975 1.50727 1.56505 2.16468 2.53962 2.75474 3.24980 3.56384 3.69696 3.76672 3.84767 4.04565 4.16288 4.19907 4.24426 4.30874 4.38502 4.53552 4.63785 4.70974 4.93214 5.03590 5.07482 5.12860 5.18380 5.19506 5.28109 5.39307 5.43430 5.60134 5.65992 5.79125 6.05807 6.13433 6.33622 6.47412 6.96122 7.16719 7.19395 7.89403 8.27097 9.17473 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.003096 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.936019 B = 9041.997865 C = 9389.385735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 N -0.607 5.607 4 C -0.265 4.265 5 H 0.071 0.929 6 C -0.049 4.049 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.284 1.284 10 H -0.300 1.300 11 H -0.279 1.279 12 C 0.146 3.854 13 C 0.112 3.888 14 N -0.703 5.703 15 C 0.490 3.510 16 O -0.587 6.587 17 C 0.076 3.924 18 N -0.482 5.482 19 C 0.134 3.866 20 C -0.233 4.233 21 C 0.008 3.992 22 C -0.287 4.287 23 C 0.495 3.505 24 O -0.614 6.614 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.247 0.753 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.421 0.579 36 H 0.130 0.870 37 H 0.183 0.817 38 H 0.202 0.798 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 5.319 24.102 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 N -0.329 5.329 4 C -0.395 4.395 5 H 0.089 0.911 6 C -0.245 4.245 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.227 1.227 11 H -0.204 1.204 12 C 0.019 3.981 13 C -0.016 4.016 14 N -0.356 5.356 15 C 0.276 3.724 16 O -0.467 6.467 17 C -0.049 4.049 18 N -0.191 5.191 19 C 0.008 3.992 20 C -0.254 4.254 21 C -0.014 4.014 22 C -0.309 4.309 23 C 0.301 3.699 24 O -0.502 6.502 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.258 0.742 36 H 0.148 0.852 37 H 0.201 0.799 38 H 0.219 0.781 39 H 0.202 0.798 40 H 0.186 0.814 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.458 5.560 23.094 24.373 hybrid contribution 0.476 0.379 -1.505 1.623 sum -4.982 5.939 21.589 22.939 Atomic orbital electron populations 1.22229 0.99135 0.98772 0.99624 1.20758 0.92489 0.84193 0.98268 1.44426 1.75646 1.10637 1.02169 1.19528 1.31352 1.03795 0.84826 0.91073 1.25401 0.98673 1.00591 0.99814 1.70327 1.27974 1.32804 1.25040 0.85428 0.78722 0.77700 0.79468 1.21047 1.22668 1.20403 1.21103 0.93429 0.95074 0.88529 1.22172 1.01560 0.94039 0.83779 1.45809 1.16602 1.49018 1.24193 1.21495 0.83566 0.79221 0.88167 1.90746 1.31049 1.64174 1.60761 1.22046 0.87548 0.98774 0.96524 1.45122 1.16533 1.13890 1.43556 1.22771 0.87748 0.99199 0.89473 1.21211 0.98535 0.96530 1.09163 1.21895 0.97887 0.93937 0.87662 1.22112 0.95028 1.03459 1.10291 1.17681 0.90047 0.81423 0.80784 1.90908 1.46875 1.67954 1.44457 0.94547 0.95869 0.93065 0.92300 0.94686 0.94383 0.92161 0.90203 0.93353 0.96326 0.74161 0.85239 0.79946 0.78140 0.79820 0.81354 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 9.58 71.98 0.69 -5.70 16 2 C 0.17 7.82 5.64 86.38 0.49 8.30 16 3 N -0.61 -28.95 2.54 -702.01 -1.78 -30.73 16 4 C -0.27 -14.33 9.70 84.04 0.82 -13.52 16 5 H 0.07 3.81 7.93 -2.91 -0.02 3.79 16 6 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 7 N -0.91 -52.30 8.54 21.65 0.18 -52.11 16 8 Si 0.96 45.23 29.62 68.60 2.03 47.26 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 C 0.15 5.31 5.82 86.38 0.50 5.82 16 13 C 0.11 4.21 5.88 86.38 0.51 4.71 16 14 N -0.70 -18.89 5.56 -463.06 -2.57 -21.46 16 15 C 0.49 14.40 7.89 87.66 0.69 15.09 16 16 O -0.59 -24.31 16.43 -3.06 -0.05 -24.36 16 17 C 0.08 1.40 5.81 85.63 0.50 1.89 16 18 N -0.48 -10.71 2.07 -655.06 -1.36 -12.07 16 19 C 0.13 1.84 10.28 83.42 0.86 2.69 16 20 C -0.23 -2.66 10.01 22.08 0.22 -2.43 16 21 C 0.01 0.12 10.10 22.32 0.23 0.34 16 22 C -0.29 -6.87 9.99 22.40 0.22 -6.65 16 23 C 0.50 15.12 7.40 84.82 0.63 15.75 16 24 O -0.61 -24.53 16.64 -5.50 -0.09 -24.62 16 25 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.02 0.99 5.98 -2.39 -0.01 0.97 16 27 H 0.05 2.79 6.28 -2.38 -0.01 2.78 16 28 H 0.06 3.12 5.87 -2.39 -0.01 3.10 16 29 H 0.04 1.40 7.97 -2.39 -0.02 1.38 16 30 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 32 H 0.08 2.36 7.95 -2.39 -0.02 2.34 16 33 H 0.05 2.01 5.93 -2.39 -0.01 2.00 16 34 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.42 7.24 8.47 -92.70 -0.79 6.46 16 36 H 0.13 2.46 7.39 -2.39 -0.02 2.44 16 37 H 0.18 0.99 8.01 -2.38 -0.02 0.97 16 38 H 0.20 0.97 8.04 -2.91 -0.02 0.94 16 39 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -85.98 342.36 3.39 -82.59 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.26 Total: 11.51 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 6.76 Total: 23.99 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.53 Total: -116.38 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.14 Total: -48.98 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -85.98 3.39 -82.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691052739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.269 kcal (2) G-P(sol) polarization free energy of solvation -85.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds