Wall clock time and date at job start Tue Mar 31 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47096 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47294 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46958 * 150.00436 * 3 2 1 7 7 C 1.38809 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00211 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.47032 * 125.64852 * 359.95905 * 9 7 2 11 11 C 1.54325 * 107.26795 * 181.09610 * 10 9 7 12 12 C 1.55154 * 102.94569 * 22.19440 * 11 10 9 13 13 H 1.09004 * 111.03494 * 82.58362 * 12 11 10 14 14 C 1.52997 * 111.00471 * 206.42092 * 12 11 10 15 15 N 1.46496 * 109.47194 * 178.64867 * 14 12 11 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 16 21 21 C 1.35347 * 126.90763 * 274.67807 * 20 19 18 22 22 N 1.33772 * 106.49700 * 179.90945 * 21 20 19 23 23 N 1.28641 * 108.88313 * 0.36673 * 22 21 20 24 24 N 1.28716 * 110.17653 * 359.77401 * 23 22 21 25 25 H 0.97004 * 125.86469 * 180.02562 * 24 23 22 26 26 C 1.47423 * 125.65037 * 180.02562 * 9 7 2 27 27 H 0.97004 * 119.99538 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.88032 * 300.51463 * 10 9 7 29 29 H 1.08993 * 109.87740 * 61.52390 * 10 9 7 30 30 H 1.09002 * 110.71857 * 263.82925 * 11 10 9 31 31 H 1.08997 * 110.71751 * 140.56030 * 11 10 9 32 32 H 1.09002 * 109.47045 * 58.64993 * 14 12 11 33 33 H 1.09001 * 109.47375 * 298.64918 * 14 12 11 34 34 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 35 35 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 36 36 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 37 37 H 1.09001 * 109.47194 * 299.99742 * 19 18 16 38 38 H 1.08992 * 109.47399 * 59.99914 * 19 18 16 39 39 H 1.08002 * 126.75766 * 0.04271 * 21 20 19 40 40 H 1.08997 * 110.36648 * 36.99560 * 26 9 7 41 41 H 1.09003 * 110.45592 * 274.71973 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0009 11 6 -0.4484 -4.0441 0.0285 12 6 0.8524 -4.6559 0.6122 13 1 0.8588 -4.5961 1.7006 14 6 1.0370 -6.1007 0.1441 15 7 2.2887 -6.6339 0.6874 16 6 2.6610 -7.8983 0.4060 17 8 1.9601 -8.5945 -0.2974 18 6 3.9484 -8.4470 0.9654 19 6 4.1330 -9.8918 0.4972 20 6 5.4200 -10.4407 1.0571 21 6 6.6584 -10.3094 0.5270 22 7 7.4948 -10.9484 1.3526 23 7 6.8179 -11.4493 2.3252 24 7 5.5692 -11.1690 2.1877 25 1 4.8575 -11.4339 2.7913 26 6 1.9334 -3.7311 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5568 -2.0518 0.8846 29 1 -0.5554 -2.0823 -0.8995 30 1 -0.6325 -4.4184 -0.9786 31 1 -1.2978 -4.2512 0.6793 32 1 1.0729 -6.1281 -0.9449 33 1 0.2014 -6.7061 0.4955 34 1 2.8492 -6.0772 1.2504 35 1 3.9122 -8.4193 2.0545 36 1 4.7842 -7.8419 0.6141 37 1 3.2972 -10.4971 0.8482 38 1 4.1692 -9.9191 -0.5918 39 1 6.9203 -9.7890 -0.3824 40 1 2.8333 -3.7402 0.6144 41 1 2.1670 -4.0435 -1.0184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691160026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:08 Heat of formation + Delta-G solvation = 68.977836 kcal Electronic energy + Delta-G solvation = -22469.766977 eV Core-core repulsion = 19001.043049 eV Total energy + Delta-G solvation = -3468.723928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.66516 -39.90148 -37.76148 -35.00789 -34.60225 -33.52175 -32.56887 -30.60575 -29.70560 -28.32925 -26.03965 -24.96500 -23.42896 -23.25704 -21.98729 -20.70787 -20.00198 -19.70243 -18.64073 -17.33884 -16.78053 -16.41105 -16.12442 -15.94396 -15.07395 -14.77728 -14.63287 -14.44648 -13.93253 -13.69979 -13.39420 -12.99872 -12.75521 -12.40577 -12.16741 -12.01933 -11.78984 -11.71558 -11.44690 -11.19389 -10.95117 -10.94537 -10.83419 -10.51136 -10.22027 -10.08508 -9.95715 -9.87118 -9.70647 -9.50052 -9.07837 -8.64441 -6.88366 -5.75810 -3.09665 1.15093 2.18953 2.34215 2.49656 3.09851 3.36858 3.41812 3.43731 4.04476 4.26732 4.44774 4.45296 4.55846 4.78607 4.84472 5.02542 5.06332 5.12794 5.17372 5.35664 5.48688 5.52060 5.53978 5.62280 5.77136 5.82599 5.97241 5.99058 6.27754 6.34680 6.42837 6.43218 6.46925 6.61355 6.84180 7.41427 7.51318 7.57991 7.78244 8.07675 8.09550 8.21521 9.17454 9.77910 10.43529 11.35896 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.002506 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.112047 B =11170.787548 C =12112.440224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.547 6.547 18 C -0.139 4.139 19 C -0.032 4.032 20 C -0.007 4.007 21 C -0.045 4.045 22 N -0.266 5.266 23 N -0.084 5.084 24 N -0.390 5.390 25 H 0.448 0.552 26 C 0.143 3.857 27 H 0.252 0.748 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.403 0.597 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.192 0.808 40 H 0.035 0.965 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -19.536 3.647 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.297 3.703 17 O -0.425 6.425 18 C -0.180 4.180 19 C -0.072 4.072 20 C -0.141 4.141 21 C -0.202 4.202 22 N -0.133 5.133 23 N -0.064 5.064 24 N -0.111 5.111 25 H 0.293 0.707 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.238 0.762 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.209 0.791 40 H 0.053 0.947 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.118 -20.459 3.933 21.713 hybrid contribution -0.593 1.658 0.033 1.761 sum 5.525 -18.801 3.966 19.993 Atomic orbital electron populations 1.69966 1.04901 1.25079 1.56976 1.24815 0.95738 0.97731 1.02188 0.86116 0.78559 0.83444 0.77612 1.21564 1.21659 1.20688 1.19046 0.90411 0.82427 1.43956 0.90472 1.44480 1.01734 0.99857 1.87199 1.21158 0.84323 0.88169 1.01180 1.22857 0.95407 0.99415 0.99689 1.22619 0.98699 0.92019 1.00487 0.90268 1.21413 0.85045 0.93814 0.98885 1.46103 1.24955 1.13701 1.52627 1.20465 0.87187 0.81841 0.80788 1.90716 1.55037 1.58420 1.38280 1.21676 0.97015 0.96712 1.02569 1.19877 0.90635 0.94236 1.02467 1.22355 0.99510 1.01526 0.90687 1.23497 0.88760 1.05006 1.02960 1.75127 1.27059 1.10560 1.00538 1.78314 0.87806 1.20373 1.19929 1.45162 1.09596 1.36886 1.19422 0.70695 1.21552 0.93914 0.86199 0.96721 0.93719 0.93572 0.93831 0.92177 0.91977 0.91272 0.91686 0.76248 0.88872 0.87905 0.89469 0.87642 0.79063 0.94710 0.96331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -14.95 3.40 -170.08 -0.58 -15.52 16 10 C 0.18 4.14 5.38 -3.06 -0.02 4.12 16 11 C -0.13 -2.34 6.42 -24.90 -0.16 -2.50 16 12 C -0.12 -1.82 3.10 -88.48 -0.27 -2.09 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.13 1.70 5.12 -4.05 -0.02 1.68 16 15 N -0.72 -7.61 5.41 -60.30 -0.33 -7.94 16 16 C 0.51 5.24 7.83 -10.98 -0.09 5.15 16 17 O -0.55 -7.59 15.98 5.56 0.09 -7.50 16 18 C -0.14 -0.86 5.68 -27.88 -0.16 -1.02 16 19 C -0.03 -0.19 5.07 -27.88 -0.14 -0.33 16 20 C -0.01 -0.05 6.56 -82.09 -0.54 -0.58 16 21 C -0.05 -0.37 11.99 -17.74 -0.21 -0.59 16 22 N -0.27 -2.99 12.41 30.23 0.38 -2.62 16 23 N -0.08 -0.86 13.38 60.35 0.81 -0.06 16 24 N -0.39 -2.60 6.98 33.54 0.23 -2.36 16 25 H 0.45 1.37 8.96 -190.40 -1.71 -0.33 16 26 C 0.14 2.70 6.41 -2.54 -0.02 2.68 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 29 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 30 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.40 3.57 8.34 -40.82 -0.34 3.23 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 38 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -34.71 343.63 -7.97 -42.68 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -7.42 Total: -2.21 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.88 Total: -0.23 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 1.09 Total: -54.62 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.71 -7.97 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691160026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.653 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds