Wall clock time and date at job start Tue Mar 31 2020 03:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 C 1.50699 * 109.47315 * 265.00709 * 9 8 7 11 11 O 1.21287 * 119.99879 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00270 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99988 * 359.97438 * 12 10 9 14 14 C 1.46498 * 120.00164 * 180.02562 * 12 10 9 15 15 C 1.53003 * 109.47576 * 89.99284 * 14 12 10 16 16 N 1.46500 * 109.47046 * 179.97438 * 15 14 12 17 17 C 1.36941 * 119.99395 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00534 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99427 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99592 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47364 * 89.99564 * 21 19 17 23 23 H 1.48504 * 109.46776 * 210.00048 * 21 19 17 24 24 H 1.48495 * 109.47105 * 329.99270 * 21 19 17 25 25 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 26 26 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 27 27 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 29 29 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 31 31 H 1.09002 * 109.47116 * 25.00398 * 9 8 7 32 32 H 1.08994 * 109.47415 * 145.00430 * 9 8 7 33 33 H 1.08998 * 109.46424 * 90.00334 * 13 12 10 34 34 H 1.08994 * 109.47031 * 210.00690 * 13 12 10 35 35 H 1.08992 * 109.46788 * 330.00885 * 13 12 10 36 36 H 1.08998 * 109.47172 * 209.99440 * 14 12 10 37 37 H 1.09003 * 109.47119 * 329.99380 * 14 12 10 38 38 H 1.08998 * 109.46997 * 300.00263 * 15 14 12 39 39 H 1.09003 * 109.46819 * 59.99912 * 15 14 12 40 40 H 0.96993 * 120.00299 * 0.02562 * 16 15 14 41 41 H 0.97006 * 119.99703 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 6 4.4642 -0.4258 -1.4168 11 8 3.9530 0.1804 -2.3346 12 7 5.1927 -1.5326 -1.6630 13 6 5.8097 -2.2652 -0.5544 14 6 5.3685 -2.0026 -3.0394 15 6 6.6172 -1.3569 -3.6434 16 7 6.7932 -1.8274 -5.0195 17 6 7.8520 -1.3821 -5.7651 18 1 8.5574 -0.6844 -5.3386 19 6 8.0191 -1.8284 -7.0689 20 7 9.0365 -1.4000 -7.7857 21 14 6.7994 -3.0358 -7.8065 22 1 5.7000 -2.2875 -8.4670 23 1 7.4901 -3.8875 -8.8079 24 1 6.2388 -3.8923 -6.7308 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2244 2.3567 0.0003 29 1 1.4006 4.5174 0.0011 30 1 5.0999 2.6329 0.0011 31 1 5.2581 0.2825 0.4331 32 1 3.7934 -0.7169 0.5881 33 1 5.1168 -3.0235 -0.1899 34 1 6.7247 -2.7454 -0.9009 35 1 6.0464 -1.5715 0.2523 36 1 5.4830 -3.0866 -3.0413 37 1 4.4952 -1.7285 -3.6313 38 1 6.5027 -0.2729 -3.6414 39 1 7.4904 -1.6310 -3.0514 40 1 6.1599 -2.4543 -5.4025 41 1 9.1531 -1.7116 -8.6970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691359893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:42 Heat of formation + Delta-G solvation = -13.318556 kcal Electronic energy + Delta-G solvation = -23217.022295 eV Core-core repulsion = 19712.436977 eV Total energy + Delta-G solvation = -3504.585318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.04190 -39.58938 -38.41379 -36.01243 -34.48063 -33.52838 -31.52870 -31.41988 -29.28447 -28.05669 -27.56637 -26.33236 -23.77893 -23.13882 -22.42915 -21.30963 -19.23396 -18.53786 -17.59563 -17.39920 -17.08576 -16.18618 -16.01840 -15.64591 -15.16763 -14.97723 -14.52487 -14.35742 -13.98840 -13.80971 -13.61598 -13.45363 -13.15723 -13.09284 -12.65438 -12.55799 -12.37780 -12.12537 -11.87479 -11.54173 -11.42331 -11.11077 -11.03922 -10.71368 -10.14850 -9.81906 -9.68356 -9.57118 -9.31826 -8.91424 -8.86514 -8.53545 -7.21341 -5.73584 -3.09568 0.87993 1.16517 2.74809 2.82864 3.05133 3.39800 3.43822 3.47886 3.64711 4.20777 4.39923 4.53172 4.60618 4.62316 4.67337 4.77488 4.81716 4.96772 5.02800 5.09360 5.15711 5.30002 5.35628 5.42983 5.50355 5.58184 5.60778 5.66665 5.70483 5.79004 5.83658 5.98983 6.34001 6.47957 6.66825 6.85011 6.89971 7.46851 7.84163 8.01897 8.29916 8.44872 9.23463 9.95673 10.15087 11.44840 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.003287 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.242060 B = 8517.226243 C = 8703.907827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.183 3.817 4 C -0.263 4.263 5 C 0.133 3.867 6 N -0.506 5.506 7 C 0.147 3.853 8 C -0.149 4.149 9 C -0.087 4.087 10 C 0.515 3.485 11 O -0.527 6.527 12 N -0.613 5.613 13 C 0.077 3.923 14 C 0.105 3.895 15 C 0.147 3.853 16 N -0.754 5.754 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.361 0.639 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 1.741 23.824 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.129 3.871 4 C -0.284 4.284 5 C -0.023 4.023 6 N -0.218 5.218 7 C -0.009 4.009 8 C -0.152 4.152 9 C -0.127 4.127 10 C 0.302 3.698 11 O -0.402 6.402 12 N -0.348 5.348 13 C -0.066 4.066 14 C -0.018 4.018 15 C 0.019 3.981 16 N -0.400 5.400 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.193 0.807 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.901 2.761 23.271 28.893 hybrid contribution -1.440 -1.670 -0.698 2.313 sum -18.341 1.091 22.573 29.105 Atomic orbital electron populations 1.23132 0.77807 1.04357 1.01584 1.86060 1.21836 1.26308 1.87540 1.19089 0.91807 0.84651 0.91563 1.22162 1.01399 0.93199 1.11633 1.22541 0.90362 0.96903 0.92509 1.67735 1.07072 1.31893 1.15110 1.22548 1.00318 0.86089 0.91949 1.19753 0.90826 0.96490 1.08143 1.20430 1.00802 0.95873 0.95598 1.20445 0.78287 0.80164 0.90909 1.90743 1.47808 1.55349 1.46289 1.47761 1.51785 1.27401 1.07818 1.21831 0.98588 0.96792 0.89423 1.21703 1.00273 0.98594 0.81198 1.20892 0.93925 0.97253 0.86080 1.42565 1.31822 1.54848 1.10766 1.19042 1.01963 1.21958 0.94278 0.89226 1.24671 0.97882 1.00125 0.96498 1.69706 1.30755 1.47860 1.09926 0.86521 0.81336 0.81584 0.78939 1.20995 1.21680 1.20363 0.92432 0.92243 0.87905 0.84453 0.82593 0.82144 0.87639 0.87720 0.92650 0.90466 0.91088 0.90624 0.89920 0.95099 0.95587 0.80695 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.32 9.77 -18.94 -0.18 -3.51 16 3 C 0.18 2.14 6.70 -38.82 -0.26 1.88 16 4 C -0.26 -2.62 9.11 -39.30 -0.36 -2.98 16 5 C 0.13 1.40 11.17 -17.60 -0.20 1.21 16 6 N -0.51 -6.45 10.36 -13.33 -0.14 -6.59 16 7 C 0.15 1.78 10.84 -17.59 -0.19 1.59 16 8 C -0.15 -1.79 4.40 -104.34 -0.46 -2.25 16 9 C -0.09 -0.90 4.16 -29.04 -0.12 -1.02 16 10 C 0.51 7.61 7.67 -10.99 -0.08 7.52 16 11 O -0.53 -10.29 15.61 5.55 0.09 -10.21 16 12 N -0.61 -8.36 2.87 -181.57 -0.52 -8.88 16 13 C 0.08 0.69 10.24 59.85 0.61 1.30 16 14 C 0.10 1.75 5.52 -4.04 -0.02 1.73 16 15 C 0.15 3.05 6.58 -4.04 -0.03 3.02 16 16 N -0.75 -18.93 5.41 -59.91 -0.32 -19.26 16 17 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 18 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -30.13 13.97 55.49 0.78 -29.36 16 21 Si 0.89 22.72 27.74 -169.99 -4.71 18.00 16 22 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 25 H 0.06 0.28 7.71 -51.92 -0.40 -0.12 16 26 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.14 0.97 6.47 -52.49 -0.34 0.63 16 29 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.11 0.80 7.32 -51.93 -0.38 0.42 16 32 H 0.10 0.91 7.73 -51.93 -0.40 0.51 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 36 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.08 1.53 7.42 -51.93 -0.39 1.14 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.36 8.73 5.53 -40.82 -0.23 8.50 16 41 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -38.39 346.20 -6.00 -44.40 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.83 Total: 4.35 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.37 Total: 5.83 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.21 Total: -64.08 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.10 Total: -13.72 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.39 -6.00 -44.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691359893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.080 kcal (2) G-P(sol) polarization free energy of solvation -38.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds