Wall clock time and date at job start Tue Mar 31 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00024 * 2 1 4 4 C 1.52995 * 109.46639 * 269.99765 * 3 2 1 5 5 N 1.46508 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.36931 * 120.00123 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99899 * 179.97438 * 6 5 4 9 9 N 1.31610 * 119.99997 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99805 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47309 * 59.99871 * 10 8 6 12 12 H 1.48497 * 109.46775 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46981 * 299.99905 * 10 8 6 14 14 C 1.34775 * 120.00340 * 179.97438 * 2 1 3 15 15 O 1.21584 * 120.00280 * 183.78066 * 14 2 1 16 16 C 1.47513 * 119.99643 * 3.78867 * 14 2 1 17 17 O 1.35184 * 127.15668 * 352.56483 * 16 14 2 18 18 N 1.21473 * 111.55972 * 179.84054 * 17 16 14 19 19 C 1.29075 * 111.68425 * 0.08391 * 18 17 16 20 20 C 1.35245 * 127.15302 * 172.54435 * 16 14 2 21 21 C 1.50108 * 131.33968 * 0.32184 * 20 16 14 22 22 C 1.53578 * 108.01978 * 163.69302 * 21 20 16 23 23 C 1.53005 * 109.80605 * 50.05292 * 22 21 20 24 24 C 1.50652 * 130.34009 * 180.28553 * 19 18 17 25 25 H 1.09000 * 109.47419 * 264.00675 * 1 2 3 26 26 H 1.08993 * 109.47316 * 24.00642 * 1 2 3 27 27 H 1.08998 * 109.47201 * 144.00587 * 1 2 3 28 28 H 1.09001 * 109.47033 * 29.99735 * 3 2 1 29 29 H 1.08999 * 109.47284 * 149.99794 * 3 2 1 30 30 H 1.09001 * 109.47383 * 299.99756 * 4 3 2 31 31 H 1.08999 * 109.47259 * 60.00013 * 4 3 2 32 32 H 0.97006 * 119.99773 * 359.97438 * 5 4 3 33 33 H 0.96998 * 120.00264 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.75082 * 283.32084 * 21 20 16 35 35 H 1.08996 * 109.75762 * 44.00768 * 21 20 16 36 36 H 1.09001 * 109.41652 * 170.15470 * 22 21 20 37 37 H 1.08996 * 109.41279 * 289.95185 * 22 21 20 38 38 H 1.09006 * 109.38096 * 48.45660 * 23 22 21 39 39 H 1.09001 * 109.37776 * 168.22648 * 23 22 21 40 40 H 1.08995 * 109.73815 * 282.68398 * 24 19 18 41 41 H 1.08995 * 109.73732 * 43.39085 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1845 2.9794 -1.4426 6 6 3.5263 3.5726 -2.6285 7 1 3.2566 3.1047 -3.5638 8 6 4.2194 4.7753 -2.6285 9 7 4.5484 5.3452 -1.4888 10 14 4.6850 5.5849 -4.2463 11 1 3.4550 5.8796 -5.0245 12 1 5.4146 6.8495 -3.9750 13 1 5.5561 4.6688 -5.0256 14 6 2.1389 -1.1671 0.0005 15 8 3.3527 -1.1682 0.0699 16 6 1.4037 -2.4433 -0.0833 17 8 0.0646 -2.6194 -0.0261 18 7 -0.2360 -3.7920 -0.1272 19 6 0.8062 -4.5420 -0.2591 20 6 1.9293 -3.6803 -0.2338 21 6 3.3515 -4.1457 -0.3524 22 6 3.3794 -5.6591 -0.0927 23 6 2.3221 -6.3526 -0.9543 24 6 0.9187 -6.0356 -0.4205 25 1 -0.3634 -0.1073 1.0220 26 1 -0.3633 0.9387 -0.4181 27 1 -0.3633 -0.8314 -0.6039 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 3.0416 0.9506 -1.9563 31 1 1.5001 1.8406 -1.9563 32 1 3.4264 3.3998 -0.6025 33 1 5.0324 6.1858 -1.4887 34 1 3.7249 -3.9371 -1.3550 35 1 3.9695 -3.6332 0.3847 36 1 4.3650 -6.0516 -0.3428 37 1 3.1710 -5.8499 0.9600 38 1 2.4060 -6.0008 -1.9826 39 1 2.4830 -7.4303 -0.9265 40 1 0.7732 -6.5221 0.5439 41 1 0.1677 -6.3870 -1.1279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691391074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:39 Heat of formation + Delta-G solvation = 35.742744 kcal Electronic energy + Delta-G solvation = -23434.794290 eV Core-core repulsion = 19932.336429 eV Total energy + Delta-G solvation = -3502.457861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.14496 -39.78360 -38.05410 -36.07696 -34.43152 -33.12851 -32.59112 -31.43727 -30.13640 -28.26461 -26.76157 -25.28700 -24.22593 -23.43752 -22.61173 -21.28966 -20.29415 -19.53967 -17.94262 -17.57437 -17.19082 -16.22491 -16.09942 -15.34875 -15.30536 -14.67545 -14.49293 -14.26190 -14.02699 -13.54834 -13.45907 -13.30493 -13.08366 -12.95549 -12.84120 -12.71907 -12.13250 -12.01150 -11.34962 -11.32268 -11.26297 -11.02713 -10.90718 -10.82386 -10.68223 -10.24829 -10.14741 -10.10635 -9.73695 -9.62664 -8.87351 -8.63531 -6.94313 -5.76111 -3.05679 0.71639 1.86291 2.47361 2.92440 3.10730 3.45570 3.49604 3.50990 3.63055 4.12225 4.43847 4.48836 4.59066 4.61947 4.70197 4.90596 5.07088 5.09433 5.16180 5.21523 5.38150 5.42276 5.45652 5.49370 5.61136 5.62339 5.68605 5.73719 5.77670 5.82614 5.93489 5.98039 5.99929 6.06336 6.44526 6.68214 6.83397 7.24740 7.69955 7.81413 8.02426 8.42167 9.53240 10.08441 10.43737 11.46699 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.003101 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.691423 B = 9027.643583 C = 9522.159273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.107 3.893 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.599 3.401 15 O -0.504 6.504 16 C -0.072 4.072 17 O 0.100 5.900 18 N -0.341 5.341 19 C 0.017 3.983 20 C -0.123 4.123 21 C -0.052 4.052 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.040 4.040 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.023 0.977 31 H 0.020 0.980 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -23.472 5.136 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C -0.015 4.015 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.384 3.616 15 O -0.379 6.379 16 C -0.136 4.136 17 O 0.032 5.968 18 N -0.045 5.045 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.089 4.089 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.078 4.078 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.218 0.782 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.262 -23.619 5.058 25.870 hybrid contribution 0.839 0.700 -0.690 1.292 sum -8.422 -22.919 4.368 24.806 Atomic orbital electron populations 1.22063 0.78642 1.04086 1.02458 1.47705 1.07611 1.05923 1.71577 1.21858 0.97671 0.82381 0.99586 1.20921 0.95341 0.89571 0.92850 1.42185 1.67154 1.21474 1.06648 1.19158 1.29658 1.02393 0.85921 0.91223 1.24747 1.01174 0.98001 0.96943 1.69643 1.44950 1.19567 1.24019 0.86236 0.78141 0.78657 0.82966 1.21236 1.21625 1.21210 1.16618 0.86098 0.80917 0.77997 1.90883 1.11782 1.85514 1.49717 1.23500 0.83897 0.96981 1.09219 1.85407 1.22269 1.20706 1.68379 1.73393 1.24312 0.90072 1.16770 1.23387 0.88165 0.99344 1.03463 1.21110 0.98833 0.90586 1.02229 1.20146 0.89264 0.95454 1.04018 1.21670 0.99517 0.94227 1.00419 1.21633 0.92988 1.00986 1.00169 1.20127 0.98823 0.85994 1.02826 0.91926 0.89653 0.90430 0.89733 0.89163 0.95910 0.96179 0.78187 0.93391 0.89337 0.88655 0.90530 0.91463 0.91159 0.90456 0.89358 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.68 59.84 0.58 1.35 16 2 N -0.60 -8.68 2.87 -182.83 -0.53 -9.20 16 3 C 0.11 1.80 5.52 -4.04 -0.02 1.78 16 4 C 0.14 2.96 6.58 -4.04 -0.03 2.93 16 5 N -0.73 -18.90 5.60 -59.91 -0.34 -19.23 16 6 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.60 9.38 7.67 -12.48 -0.10 9.28 16 15 O -0.50 -9.30 15.44 5.29 0.08 -9.22 16 16 C -0.07 -0.98 6.86 -36.87 -0.25 -1.23 16 17 O 0.10 1.28 8.07 13.83 0.11 1.39 16 18 N -0.34 -4.34 12.03 33.15 0.40 -3.94 16 19 C 0.02 0.19 7.22 -82.50 -0.60 -0.40 16 20 C -0.12 -1.51 6.02 -104.70 -0.63 -2.14 16 21 C -0.05 -0.54 5.66 -27.87 -0.16 -0.70 16 22 C -0.12 -0.88 5.87 -26.43 -0.16 -1.04 16 23 C -0.12 -0.77 5.84 -26.49 -0.15 -0.92 16 24 C -0.04 -0.30 6.32 -27.67 -0.17 -0.47 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 27 H 0.08 0.83 5.44 -51.93 -0.28 0.55 16 28 H 0.08 1.28 8.07 -51.93 -0.42 0.87 16 29 H 0.09 1.65 7.37 -51.93 -0.38 1.27 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.38 10.29 7.67 -40.82 -0.31 9.97 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.09 7.66 -51.93 -0.40 0.70 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -33.24 338.41 -7.38 -40.62 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.98 Total: 3.62 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.93 Total: 0.96 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.26 Total: -60.10 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.19 Total: -7.83 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.24 -7.38 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691391074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.366 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds