Wall clock time and date at job start Tue Mar 31 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00024 * 2 1 4 4 C 1.52995 * 109.46639 * 269.99765 * 3 2 1 5 5 N 1.46508 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.36931 * 120.00123 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99899 * 179.97438 * 6 5 4 9 9 N 1.31610 * 119.99997 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99805 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47309 * 59.99871 * 10 8 6 12 12 H 1.48497 * 109.46775 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46981 * 299.99905 * 10 8 6 14 14 C 1.34775 * 120.00340 * 179.97438 * 2 1 3 15 15 O 1.21584 * 120.00280 * 183.78066 * 14 2 1 16 16 C 1.47513 * 119.99643 * 3.78867 * 14 2 1 17 17 O 1.35184 * 127.15668 * 352.56483 * 16 14 2 18 18 N 1.21473 * 111.55972 * 179.84054 * 17 16 14 19 19 C 1.29075 * 111.68425 * 0.08391 * 18 17 16 20 20 C 1.35245 * 127.15302 * 172.54435 * 16 14 2 21 21 C 1.50108 * 131.33968 * 0.32184 * 20 16 14 22 22 C 1.53578 * 108.01978 * 163.69302 * 21 20 16 23 23 C 1.53005 * 109.80605 * 50.05292 * 22 21 20 24 24 C 1.50652 * 130.34009 * 180.28553 * 19 18 17 25 25 H 1.09000 * 109.47419 * 264.00675 * 1 2 3 26 26 H 1.08993 * 109.47316 * 24.00642 * 1 2 3 27 27 H 1.08998 * 109.47201 * 144.00587 * 1 2 3 28 28 H 1.09001 * 109.47033 * 29.99735 * 3 2 1 29 29 H 1.08999 * 109.47284 * 149.99794 * 3 2 1 30 30 H 1.09001 * 109.47383 * 299.99756 * 4 3 2 31 31 H 1.08999 * 109.47259 * 60.00013 * 4 3 2 32 32 H 0.97006 * 119.99773 * 359.97438 * 5 4 3 33 33 H 0.96998 * 120.00264 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.75082 * 283.32084 * 21 20 16 35 35 H 1.08996 * 109.75762 * 44.00768 * 21 20 16 36 36 H 1.09001 * 109.41652 * 170.15470 * 22 21 20 37 37 H 1.08996 * 109.41279 * 289.95185 * 22 21 20 38 38 H 1.09006 * 109.38096 * 48.45660 * 23 22 21 39 39 H 1.09001 * 109.37776 * 168.22648 * 23 22 21 40 40 H 1.08995 * 109.73815 * 282.68398 * 24 19 18 41 41 H 1.08995 * 109.73732 * 43.39085 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1845 2.9794 -1.4426 6 6 3.5263 3.5726 -2.6285 7 1 3.2566 3.1047 -3.5638 8 6 4.2194 4.7753 -2.6285 9 7 4.5484 5.3452 -1.4888 10 14 4.6850 5.5849 -4.2463 11 1 3.4550 5.8796 -5.0245 12 1 5.4146 6.8495 -3.9750 13 1 5.5561 4.6688 -5.0256 14 6 2.1389 -1.1671 0.0005 15 8 3.3527 -1.1682 0.0699 16 6 1.4037 -2.4433 -0.0833 17 8 0.0646 -2.6194 -0.0261 18 7 -0.2360 -3.7920 -0.1272 19 6 0.8062 -4.5420 -0.2591 20 6 1.9293 -3.6803 -0.2338 21 6 3.3515 -4.1457 -0.3524 22 6 3.3794 -5.6591 -0.0927 23 6 2.3221 -6.3526 -0.9543 24 6 0.9187 -6.0356 -0.4205 25 1 -0.3634 -0.1073 1.0220 26 1 -0.3633 0.9387 -0.4181 27 1 -0.3633 -0.8314 -0.6039 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 3.0416 0.9506 -1.9563 31 1 1.5001 1.8406 -1.9563 32 1 3.4264 3.3998 -0.6025 33 1 5.0324 6.1858 -1.4887 34 1 3.7249 -3.9371 -1.3550 35 1 3.9695 -3.6332 0.3847 36 1 4.3650 -6.0516 -0.3428 37 1 3.1710 -5.8499 0.9600 38 1 2.4060 -6.0008 -1.9826 39 1 2.4830 -7.4303 -0.9265 40 1 0.7732 -6.5221 0.5439 41 1 0.1677 -6.3870 -1.1279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691391074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:38 Heat of formation + Delta-G solvation = 14.216785 kcal Electronic energy + Delta-G solvation = -23435.727726 eV Core-core repulsion = 19932.336429 eV Total energy + Delta-G solvation = -3503.391297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.08938 -41.03892 -38.79863 -37.51324 -36.19002 -34.14932 -33.46560 -33.25589 -31.08730 -29.81007 -27.84846 -26.40230 -25.65938 -24.24539 -24.14647 -22.76364 -21.06126 -20.56967 -19.26713 -18.90771 -18.60790 -17.49740 -17.18425 -16.78369 -16.30664 -16.05055 -15.60913 -15.23404 -15.21115 -15.10676 -14.86717 -14.63585 -14.23563 -14.13366 -13.77333 -13.41316 -13.15620 -13.09739 -12.87300 -12.83367 -12.76214 -12.35964 -12.17314 -11.93655 -11.90024 -11.86708 -11.55665 -11.39506 -10.97759 -10.97454 -10.64233 -9.87374 -9.07516 -7.98036 -5.28914 -0.34466 0.95585 1.34769 1.46965 1.50455 1.56712 1.75000 2.00075 2.55535 2.82779 3.20725 3.35307 3.59685 3.77310 3.87737 3.93538 3.99638 4.10787 4.16612 4.26678 4.27954 4.35942 4.40231 4.50658 4.53266 4.63139 4.84005 4.86563 4.90611 4.95499 4.96348 5.04025 5.12605 5.13360 5.27392 5.31756 5.38392 5.45996 6.04831 6.23196 6.67971 6.97302 7.29902 8.00639 8.26556 9.25031 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.003101 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.691423 B = 9027.643583 C = 9522.159273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.122 3.878 4 C 0.147 3.853 5 N -0.742 5.742 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.071 4.071 9 N -0.967 5.967 10 Si 0.977 3.023 11 H -0.274 1.274 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.597 3.403 15 O -0.542 6.542 16 C -0.089 4.089 17 O 0.098 5.902 18 N -0.354 5.354 19 C 0.023 3.977 20 C -0.124 4.124 21 C -0.056 4.056 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.042 4.042 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.003 0.997 31 H 0.031 0.969 32 H 0.377 0.623 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -25.314 4.579 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C -0.001 4.001 4 C 0.019 3.981 5 N -0.385 5.385 6 C -0.385 4.385 7 H 0.091 0.909 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.805 3.195 11 H -0.200 1.200 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.383 3.617 15 O -0.420 6.420 16 C -0.153 4.153 17 O 0.032 5.968 18 N -0.060 5.060 19 C -0.138 4.138 20 C -0.129 4.129 21 C -0.093 4.093 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.079 4.079 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.209 0.791 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.369 -25.486 4.495 27.879 hybrid contribution 1.125 1.186 -0.507 1.712 sum -9.244 -24.300 3.987 26.303 Atomic orbital electron populations 1.22294 0.76191 1.04901 1.04043 1.47746 1.08995 1.04792 1.70959 1.21533 0.97829 0.83934 0.96796 1.20962 0.94553 0.87057 0.95497 1.42348 1.67657 1.22849 1.05669 1.19545 1.29337 1.02666 0.86943 0.90920 1.25605 1.01556 0.98771 1.00409 1.69797 1.45888 1.19856 1.26120 0.85172 0.78040 0.77349 0.78945 1.20019 1.21752 1.20588 1.16873 0.85837 0.81748 0.77266 1.90855 1.13427 1.86229 1.51487 1.23201 0.84574 0.96500 1.11036 1.85393 1.21555 1.20986 1.68888 1.73372 1.24926 0.90184 1.17563 1.23993 0.87038 1.00987 1.01734 1.21504 1.00059 0.90434 1.00933 1.20238 0.87954 0.97903 1.03197 1.21682 1.00998 0.91628 1.01024 1.21653 0.91745 1.02576 0.99383 1.20394 0.99974 0.83302 1.04255 0.89867 0.88496 0.90003 0.87551 0.90937 0.97940 0.95075 0.79050 0.93723 0.89806 0.90306 0.88895 0.90987 0.91703 0.87542 0.87575 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 9.68 127.77 1.24 2.62 16 2 N -0.59 -17.21 2.87 -850.61 -2.44 -19.65 16 3 C 0.12 4.12 5.52 86.38 0.48 4.60 16 4 C 0.15 6.21 6.58 86.38 0.57 6.77 16 5 N -0.74 -38.95 5.60 -343.44 -1.92 -40.88 16 6 C -0.25 -14.58 9.99 84.04 0.84 -13.74 16 7 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 9 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 10 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 C 0.60 19.11 7.67 86.69 0.66 19.77 16 15 O -0.54 -20.91 15.44 -3.98 -0.06 -20.98 16 16 C -0.09 -2.44 6.86 24.03 0.16 -2.28 16 17 O 0.10 2.43 8.07 59.52 0.48 2.91 16 18 N -0.35 -8.59 12.03 -50.84 -0.61 -9.21 16 19 C 0.02 0.49 7.22 43.77 0.32 0.81 16 20 C -0.12 -3.01 6.02 -19.92 -0.12 -3.13 16 21 C -0.06 -1.15 5.66 29.86 0.17 -0.98 16 22 C -0.12 -1.45 5.87 30.79 0.18 -1.27 16 23 C -0.12 -1.13 5.84 30.75 0.18 -0.95 16 24 C -0.04 -0.50 6.32 29.99 0.19 -0.32 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.79 8.03 -2.39 -0.02 1.77 16 27 H 0.08 1.66 5.44 -2.39 -0.01 1.65 16 28 H 0.11 3.14 8.07 -2.39 -0.02 3.12 16 29 H 0.07 2.74 7.37 -2.39 -0.02 2.72 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.38 20.62 7.67 -92.70 -0.71 19.91 16 33 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.89 7.66 -2.39 -0.02 1.87 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.85 8.11 -2.39 -0.02 0.84 16 38 H 0.06 0.73 8.10 -2.38 -0.02 0.71 16 39 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -72.14 338.41 3.42 -68.72 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.33 Total: 21.54 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.33 Total: 8.25 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -4.70 Total: -129.05 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.42 Total: -18.06 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -72.14 3.42 -68.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691391074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.937 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds