Wall clock time and date at job start Tue Mar 31 2020 03:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48497 * 109.47281 * 270.00182 * 3 2 1 5 5 H 1.48498 * 109.46876 * 30.00008 * 3 2 1 6 6 H 1.48500 * 109.46903 * 150.00074 * 3 2 1 7 7 C 1.38811 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99797 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.85032 * 336.19842 * 10 9 7 12 12 C 1.53782 * 113.68971 * 107.46371 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.19569 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 N 1.46494 * 109.47391 * 87.55384 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00326 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47255 * 179.97438 * 19 17 16 21 21 N 1.46501 * 109.47097 * 179.97438 * 20 19 17 22 22 C 1.34428 * 126.82499 * 124.99735 * 21 20 19 23 23 N 1.30831 * 108.07865 * 179.97438 * 22 21 20 24 24 C 1.33241 * 109.82753 * 0.02562 * 23 22 21 25 25 N 1.30707 * 108.95010 * 359.75361 * 24 23 22 26 26 C 1.53781 * 113.61266 * 204.99945 * 10 9 7 27 27 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99515 * 359.97438 * 9 7 2 29 29 H 1.08997 * 113.61668 * 203.67120 * 12 10 9 30 30 H 1.08994 * 113.61387 * 334.57855 * 12 10 9 31 31 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 32 32 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 33 33 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 34 34 H 1.09000 * 109.46571 * 299.99706 * 19 17 16 35 35 H 1.08996 * 109.47470 * 59.99592 * 19 17 16 36 36 H 1.09000 * 109.47256 * 299.99488 * 20 19 17 37 37 H 1.09004 * 109.47121 * 59.99874 * 20 19 17 38 38 H 1.07995 * 125.96080 * 359.93208 * 22 21 20 39 39 H 1.08005 * 125.52590 * 179.97438 * 24 23 22 40 40 H 1.09002 * 113.61445 * 25.35018 * 26 10 9 41 41 H 1.09002 * 113.61408 * 156.16749 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0657 -3.5637 -0.4059 12 6 2.0011 -4.4032 1.3428 13 6 0.7218 -5.0831 0.8219 14 1 -0.1898 -4.5302 1.0484 15 6 0.6239 -6.5665 1.1834 16 7 -0.0070 -6.7083 2.4979 17 6 -0.1982 -7.9338 3.0250 18 8 0.1516 -8.9194 2.4109 19 6 -0.8477 -8.0796 4.3770 20 6 -0.9454 -9.5630 4.7386 21 7 -1.5763 -9.7047 6.0532 22 6 -2.6632 -10.4377 6.3505 23 7 -2.9072 -10.3020 7.6287 24 6 -2.0021 -9.4933 8.1782 25 7 -1.1627 -9.1056 7.2543 26 6 1.2602 -4.8288 -0.5960 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 0.0002 29 1 2.8305 -5.0940 1.4940 30 1 1.8319 -3.7497 2.1985 31 1 0.0240 -7.0841 0.4347 32 1 1.6235 -7.0004 1.2114 33 1 -0.2864 -5.9200 2.9892 34 1 -0.2483 -7.5615 5.1257 35 1 -1.8474 -7.6463 4.3485 36 1 -1.5450 -10.0808 3.9899 37 1 0.0542 -9.9967 4.7670 38 1 -3.2355 -11.0340 5.6554 39 1 -1.9656 -9.2075 9.2191 40 1 0.4929 -4.5188 -1.3054 41 1 1.8872 -5.6353 -0.9762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691487240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:27 Heat of formation + Delta-G solvation = 81.091890 kcal Electronic energy + Delta-G solvation = -22089.751424 eV Core-core repulsion = 18621.552801 eV Total energy + Delta-G solvation = -3468.198623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.38397 -40.03723 -38.60872 -35.31055 -34.73570 -33.27453 -31.55694 -31.14525 -30.12614 -27.59326 -25.18051 -25.05264 -23.67692 -22.33394 -22.04884 -21.62524 -20.52655 -18.52177 -17.97426 -17.40509 -16.81496 -16.35651 -16.10482 -15.70686 -15.16402 -14.98901 -14.60096 -14.36691 -14.13681 -13.96463 -13.59729 -13.23110 -12.98914 -12.89494 -12.47662 -12.28156 -11.98278 -11.70765 -11.45810 -11.09587 -10.89183 -10.56113 -10.44216 -10.30636 -10.20705 -10.14421 -10.08319 -9.86105 -9.74556 -9.54182 -9.13958 -8.93705 -7.05614 -5.85768 -3.15021 1.27579 1.88415 2.38519 2.63588 3.04678 3.38537 3.44077 3.45504 3.98107 4.04367 4.27923 4.44894 4.51382 4.65642 4.77616 4.89647 4.96117 5.01117 5.16806 5.23481 5.34477 5.40009 5.53997 5.62490 5.78267 5.87054 5.88052 6.02933 6.07842 6.14494 6.27754 6.30965 6.41115 6.51877 6.67948 6.82484 6.97698 7.31495 7.64401 7.72870 7.98252 8.33428 9.44183 10.01214 10.35279 11.36644 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023302 B = 0.002285 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.330515 B =12252.395618 C =13068.806724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.121 4.121 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.720 5.720 17 C 0.517 3.483 18 O -0.549 6.549 19 C -0.155 4.155 20 C 0.147 3.853 21 N -0.380 5.380 22 C 0.256 3.744 23 N -0.550 5.550 24 C 0.197 3.803 25 N -0.318 5.318 26 C -0.148 4.148 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.219 0.781 39 H 0.217 0.783 40 H 0.068 0.932 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 -20.062 9.780 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.139 4.139 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.370 5.370 17 C 0.302 3.698 18 O -0.428 6.428 19 C -0.195 4.195 20 C 0.024 3.976 21 N -0.170 5.170 22 C -0.041 4.041 23 N -0.277 5.277 24 C -0.106 4.106 25 N -0.146 5.146 26 C -0.187 4.187 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.239 0.761 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.279 -20.243 9.538 22.616 hybrid contribution -0.148 1.263 0.098 1.276 sum -3.427 -18.979 9.636 21.559 Atomic orbital electron populations 1.69656 1.05153 1.25843 1.57425 1.24770 0.95554 0.97833 1.02718 0.86163 0.78667 0.83621 0.77579 1.21627 1.21735 1.20686 1.19291 0.91134 0.83953 1.43041 0.90971 1.42168 1.05667 0.99440 1.87138 1.21047 0.95137 0.85592 0.92728 0.91937 1.23929 0.95590 0.99618 1.01835 1.22749 0.99640 0.92803 0.98744 0.88877 1.21519 0.97667 0.97161 0.82919 1.46070 1.61694 1.08057 1.21198 1.20248 0.78985 0.83553 0.87000 1.90721 1.51706 1.37647 1.62686 1.21877 1.03813 0.97571 0.96274 1.21549 1.00696 0.96975 0.78343 1.50641 1.22403 1.35480 1.08527 1.26127 0.88704 0.95088 0.94201 1.70560 1.28633 1.22113 1.06375 1.26044 0.89469 0.94427 1.00618 1.78058 1.24056 1.21572 0.90938 1.23445 1.00516 0.99722 0.95054 0.93408 0.78129 0.91404 0.91489 0.91684 0.91431 0.76085 0.87258 0.88181 0.87052 0.88258 0.76431 0.76671 0.91305 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -16.94 5.31 -52.64 -0.28 -17.22 16 10 C 0.17 3.15 4.56 -67.12 -0.31 2.84 16 11 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 12 C -0.17 -2.67 7.44 -25.82 -0.19 -2.86 16 13 C -0.12 -1.68 3.65 -89.71 -0.33 -2.00 16 14 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 15 C 0.13 1.58 5.51 -4.05 -0.02 1.55 16 16 N -0.72 -7.57 5.56 -60.30 -0.33 -7.90 16 17 C 0.52 5.42 7.83 -10.99 -0.09 5.34 16 18 O -0.55 -7.48 15.98 5.56 0.09 -7.39 16 19 C -0.15 -1.17 5.92 -27.88 -0.16 -1.33 16 20 C 0.15 1.04 5.84 -4.04 -0.02 1.01 16 21 N -0.38 -3.17 3.69 -62.63 -0.23 -3.40 16 22 C 0.26 1.88 12.63 -90.66 -1.14 0.74 16 23 N -0.55 -5.30 11.19 -15.83 -0.18 -5.48 16 24 C 0.20 1.79 13.03 -91.82 -1.20 0.60 16 25 N -0.32 -3.26 12.57 29.29 0.37 -2.90 16 26 C -0.15 -2.25 7.38 -25.92 -0.19 -2.44 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 29 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 33 H 0.40 3.69 8.47 -40.82 -0.35 3.35 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.22 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.22 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -33.78 353.06 -9.54 -43.32 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.09 Total: 9.19 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.90 Total: -3.72 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.07 Total: -63.60 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.78 -9.54 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691487240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.415 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds